Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.47398 * 2 1 4 4 C 1.34227 * 117.00218 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99643 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99885 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.47700 * 300.00324 * 6 4 3 8 8 C 1.47198 * 109.46916 * 60.00348 * 6 4 3 9 9 N 4.97824 * 108.59082 * 26.82689 * 2 1 3 10 10 C 1.53004 * 109.46960 * 180.02562 * 6 4 3 11 11 C 1.53000 * 109.47112 * 174.39635 * 10 6 4 12 12 C 1.50696 * 115.55181 * 304.93185 * 11 10 6 13 13 H 1.07998 * 120.00698 * 99.49133 * 12 11 10 14 14 C 1.37883 * 119.99707 * 279.49601 * 12 11 10 15 15 N 1.31513 * 120.00175 * 5.37604 * 14 12 11 16 16 Si 1.86798 * 119.99799 * 185.38038 * 14 12 11 17 17 H 1.48501 * 109.46989 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47187 * 299.99575 * 16 14 12 19 19 H 1.48500 * 109.47245 * 59.99875 * 16 14 12 20 20 C 1.53003 * 117.51875 * 90.63072 * 11 10 6 21 21 C 1.52989 * 60.00059 * 107.48031 * 20 11 10 22 22 H 1.08997 * 109.47471 * 179.97438 * 1 2 3 23 23 H 1.09011 * 109.47090 * 299.99999 * 1 2 3 24 24 H 1.09000 * 109.47203 * 59.99417 * 1 2 3 25 25 H 1.08998 * 109.46787 * 240.00128 * 2 1 3 26 26 H 1.08995 * 109.47337 * 119.99883 * 2 1 3 27 27 H 1.08995 * 109.47014 * 54.39794 * 10 6 4 28 28 H 1.09004 * 109.47019 * 294.39226 * 10 6 4 29 29 H 0.96998 * 120.00024 * 174.99555 * 15 14 12 30 30 H 1.08999 * 117.50136 * 214.97320 * 20 11 10 31 31 H 1.09001 * 117.49925 * 359.97438 * 20 11 10 32 32 H 1.08999 * 117.50404 * 252.51051 * 21 20 11 33 33 H 1.09003 * 117.50166 * 107.48953 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4693 -0.8911 8 6 3.4675 3.6563 1.2007 9 7 3.1171 4.2106 2.1294 10 6 5.4486 2.8573 -0.0023 11 6 6.0330 4.2642 -0.1438 12 6 5.5552 5.0494 -1.3380 13 1 4.7769 5.7890 -1.2219 14 6 6.1118 4.8235 -2.5791 15 7 6.9828 3.8517 -2.7422 16 14 5.6287 5.8978 -4.0289 17 1 6.3628 5.4532 -5.2408 18 1 4.1672 5.7828 -4.2649 19 1 5.9727 7.3119 -3.7334 20 6 6.3248 5.0411 1.1416 21 6 7.4785 4.4777 0.3097 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.7795 2.2407 -0.8381 28 1 5.7900 2.4145 0.9334 29 1 7.3195 3.6458 -3.6283 30 1 6.1711 6.1200 1.1235 31 1 6.1000 4.5500 2.0885 32 1 8.0132 3.6159 0.7091 33 1 8.0840 5.1860 -0.2558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691691498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = -59.683610 kcal Electronic energy + Delta-G solvation = -16760.435694 eV Core-core repulsion = 13979.530656 eV Total energy + Delta-G solvation = -2780.905039 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75840 -39.12105 -37.70279 -37.30902 -33.98207 -33.69085 -32.38987 -27.73686 -26.65728 -24.11735 -22.96756 -22.41074 -21.16095 -19.68534 -18.46853 -17.72631 -17.68029 -16.81711 -16.51441 -15.64429 -15.31127 -14.97886 -14.84116 -14.46783 -13.94393 -13.72298 -13.61793 -13.35858 -13.13628 -12.90036 -12.77186 -12.62305 -12.49521 -12.40813 -12.25854 -11.99860 -11.66400 -11.50991 -11.25719 -10.75053 -10.40642 -9.91704 -8.03856 -6.17496 0.92613 1.31599 1.49545 1.53121 1.58029 1.68495 1.94921 2.48455 2.85817 3.24328 3.47260 3.68078 3.98848 4.05363 4.11213 4.28212 4.38771 4.44537 4.62351 4.79385 4.90599 4.92354 4.95922 5.00267 5.13068 5.22726 5.33303 5.39704 5.63067 5.68500 5.86136 6.42125 6.44806 6.61362 6.89472 7.52321 9.03276 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.007915 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.233112 B = 3536.817067 C = 4059.552265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.358 6.358 4 C 0.484 3.516 5 O -0.510 6.510 6 C 0.035 3.965 7 H 0.166 0.834 8 C 0.247 3.753 9 N -0.448 5.448 10 C -0.043 4.043 11 C 0.025 3.975 12 C -0.513 4.513 13 H 0.058 0.942 14 C 0.038 3.962 15 N -0.899 5.899 16 Si 0.940 3.060 17 H -0.289 1.289 18 H -0.264 1.264 19 H -0.280 1.280 20 C -0.194 4.194 21 C -0.162 4.162 22 H 0.105 0.895 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.262 0.738 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 -6.686 2.164 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.275 6.275 4 C 0.325 3.675 5 O -0.398 6.398 6 C 0.013 3.987 7 H 0.183 0.817 8 C -0.071 4.071 9 N -0.124 5.124 10 C -0.082 4.082 11 C 0.025 3.975 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.164 4.164 15 N -0.535 5.535 16 Si 0.766 3.234 17 H -0.214 1.214 18 H -0.189 1.189 19 H -0.206 1.206 20 C -0.231 4.231 21 C -0.200 4.200 22 H 0.123 0.877 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.850 -6.234 3.437 12.153 hybrid contribution 0.438 0.284 -1.254 1.359 sum -9.412 -5.950 2.183 11.347 Atomic orbital electron populations 1.21839 0.90284 1.04546 1.03645 1.23430 0.97231 0.78704 1.03111 1.86540 1.23069 1.34509 1.83390 1.23077 0.81134 0.91236 0.72022 1.90665 1.60967 1.42779 1.45363 1.18610 0.98089 0.88260 0.93732 0.81728 1.28254 0.92055 0.93301 0.93471 1.81126 1.10067 1.09435 1.11813 1.20870 0.87663 0.98082 1.01604 1.18954 0.94744 0.91892 0.91926 1.20599 1.21089 1.21273 0.92042 0.92396 1.25539 0.94237 0.95885 1.00709 1.70050 1.30463 1.29888 1.23137 0.85900 0.78905 0.79380 0.79217 1.21441 1.18897 1.20583 1.22934 1.05983 0.99072 0.95131 1.22499 0.92615 1.01539 1.03324 0.87673 0.91648 0.91160 0.90541 0.90984 0.90167 0.92820 0.92878 0.90882 0.90706 0.90702 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.05 1.05 6.19 71.98 0.45 1.50 16 3 O -0.36 -10.33 10.13 -51.38 -0.52 -10.85 16 4 C 0.48 16.20 7.23 71.24 0.51 16.72 16 5 O -0.51 -18.98 15.66 21.97 0.34 -18.64 16 6 C 0.04 1.25 2.54 -13.35 -0.03 1.22 16 7 H 0.17 5.79 7.23 -2.39 -0.02 5.78 16 8 C 0.25 9.02 13.36 89.43 1.19 10.21 16 9 N -0.45 -17.21 18.54 20.02 0.37 -16.84 16 10 C -0.04 -1.77 3.98 30.60 0.12 -1.65 16 11 C 0.03 1.14 1.04 -52.93 -0.06 1.08 16 12 C -0.51 -25.12 7.65 25.60 0.20 -24.92 16 13 H 0.06 2.83 7.82 -2.91 -0.02 2.81 16 14 C 0.04 1.92 5.42 84.66 0.46 2.38 16 15 N -0.90 -47.31 13.10 21.45 0.28 -47.03 16 16 Si 0.94 40.03 29.54 68.60 2.03 42.06 16 17 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 C -0.19 -8.18 9.16 30.59 0.28 -7.90 16 21 C -0.16 -7.30 9.70 30.59 0.30 -7.00 16 22 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 1.61 8.13 -2.39 -0.02 1.59 16 26 H 0.07 1.52 8.13 -2.39 -0.02 1.51 16 27 H 0.08 3.64 7.93 -2.39 -0.02 3.62 16 28 H 0.05 2.10 8.09 -2.38 -0.02 2.08 16 29 H 0.26 13.34 8.32 -92.71 -0.77 12.57 16 30 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -56.68 297.49 7.76 -48.92 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.10 Total: 12.21 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.16 Total: -9.83 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.65 Total: -63.87 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.18 Total: -29.49 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -56.68 7.76 -48.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691691498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.761 kcal (2) G-P(sol) polarization free energy of solvation -56.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds