Wall clock time and date at job start Mon Mar 30 2020 03:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34163 * 127.01892 * 2 1 4 4 O 1.34217 * 109.14227 * 179.97438 * 3 2 1 5 5 C 1.33674 * 110.91239 * 359.74662 * 4 3 2 6 6 C 1.36497 * 108.37519 * 0.41601 * 5 4 3 7 7 C 1.47300 * 127.19288 * 179.86986 * 6 5 4 8 8 O 1.21640 * 119.99778 * 220.04454 * 7 6 5 9 9 N 1.34778 * 120.00440 * 40.05051 * 7 6 5 10 10 C 1.36958 * 119.99957 * 181.79456 * 9 7 6 11 11 H 1.07994 * 120.00349 * 4.77528 * 10 9 7 12 12 C 1.38979 * 119.99458 * 184.50287 * 10 9 7 13 13 N 1.31409 * 120.00025 * 125.32253 * 12 10 9 14 14 Si 1.86801 * 120.00378 * 305.32024 * 12 10 9 15 15 H 1.48499 * 109.47200 * 93.43098 * 14 12 10 16 16 H 1.48497 * 109.47258 * 213.43211 * 14 12 10 17 17 H 1.48501 * 109.47125 * 333.43256 * 14 12 10 18 18 C 1.46498 * 119.99555 * 1.79120 * 9 7 6 19 19 C 1.53001 * 109.47078 * 274.61591 * 18 9 7 20 20 C 1.52996 * 109.47523 * 34.61666 * 18 9 7 21 21 H 1.09000 * 109.46593 * 270.04294 * 1 2 3 22 22 H 1.08999 * 109.46689 * 30.03486 * 1 2 3 23 23 H 1.09001 * 109.47036 * 150.03986 * 1 2 3 24 24 H 1.07998 * 125.43454 * 359.93264 * 3 2 1 25 25 H 1.08001 * 125.81314 * 180.25573 * 5 4 3 26 26 H 0.97003 * 120.00397 * 179.97438 * 13 12 10 27 27 H 1.09000 * 109.47353 * 154.61840 * 18 9 7 28 28 H 1.08996 * 109.47383 * 18.25622 * 19 18 9 29 29 H 1.08998 * 109.47320 * 138.25738 * 19 18 9 30 30 H 1.09007 * 109.47169 * 258.25846 * 19 18 9 31 31 H 1.08997 * 109.47196 * 130.07146 * 20 18 9 32 32 H 1.09002 * 109.47372 * 250.07177 * 20 18 9 33 33 H 1.08998 * 109.47168 * 10.06874 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3148 1.0712 0.0000 4 8 3.5922 0.6592 0.0006 5 6 3.6630 -0.6756 0.0065 6 6 2.3923 -1.1740 0.0006 7 6 1.9917 -2.5914 0.0012 8 8 1.0539 -2.9587 -0.6809 9 7 2.6640 -3.4815 0.7576 10 6 2.3150 -4.8056 0.7301 11 1 1.5533 -5.1491 0.0459 12 6 2.9450 -5.7080 1.5787 13 7 2.2302 -6.4655 2.3800 14 14 4.8081 -5.8444 1.5802 15 1 5.3684 -4.9576 2.6314 16 1 5.2014 -7.2494 1.8565 17 1 5.3355 -5.4344 0.2540 18 6 3.7683 -3.0326 1.6093 19 6 5.0592 -2.9881 0.7893 20 6 3.4595 -1.6352 2.1505 21 1 -0.3632 0.0008 1.0277 22 1 -0.3633 0.8897 -0.5144 23 1 -0.3633 -0.8903 -0.5132 24 1 1.9892 2.1009 -0.0010 25 1 4.5710 -1.2603 0.0121 26 1 2.6699 -7.0956 2.9720 27 1 3.8903 -3.7258 2.4416 28 1 4.8149 -2.9793 -0.2729 29 1 5.6186 -2.0871 1.0409 30 1 5.6639 -3.8663 1.0157 31 1 3.6098 -1.6223 3.2300 32 1 4.1242 -0.9092 1.6824 33 1 2.4245 -1.3786 1.9247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705273626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:02 Heat of formation + Delta-G solvation = 44.623924 kcal Electronic energy + Delta-G solvation = -17920.751055 eV Core-core repulsion = 15144.369131 eV Total energy + Delta-G solvation = -2776.381925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.35550 -38.91907 -35.69655 -33.60675 -32.91251 -31.01931 -29.79368 -26.96856 -26.77821 -25.28998 -22.27069 -22.04308 -19.85529 -18.65086 -17.01285 -16.90176 -15.91828 -15.65859 -14.92915 -14.56543 -14.24725 -13.67741 -13.33690 -13.00004 -12.81462 -12.61098 -12.54406 -12.35345 -12.04579 -11.76251 -11.52607 -11.11189 -10.93839 -10.89242 -10.46511 -10.15542 -9.73035 -8.91086 -8.63911 -8.46629 -8.08103 -7.80014 -6.75833 -3.66276 2.07292 2.61001 2.98481 3.22040 3.23878 3.42001 4.01155 4.05571 4.33757 4.86424 5.01386 5.18217 5.28185 5.45768 5.52710 5.62971 5.74256 5.87053 5.99643 6.05004 6.08007 6.16372 6.27672 6.31090 6.41467 6.54862 6.60299 6.69714 6.93735 7.34850 7.48885 8.20441 8.40051 9.00393 9.37132 9.92822 10.29073 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034158 B = 0.010145 C = 0.008587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.531264 B = 2759.204489 C = 3259.987206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.142 4.142 3 C -0.067 4.067 4 O -0.187 6.187 5 C -0.028 4.028 6 C -0.194 4.194 7 C 0.502 3.498 8 O -0.577 6.577 9 N -0.428 5.428 10 C -0.361 4.361 11 H 0.118 0.882 12 C 0.088 3.912 13 N -0.782 5.782 14 Si 0.827 3.173 15 H -0.273 1.273 16 H -0.290 1.290 17 H -0.259 1.259 18 C 0.109 3.891 19 C -0.196 4.196 20 C -0.176 4.176 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.197 0.803 25 H 0.218 0.782 26 H 0.276 0.724 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 11.623 0.374 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.144 4.144 3 C -0.133 4.133 4 O -0.084 6.084 5 C -0.095 4.095 6 C -0.199 4.199 7 C 0.292 3.708 8 O -0.463 6.463 9 N -0.146 5.146 10 C -0.484 4.484 11 H 0.135 0.865 12 C -0.125 4.125 13 N -0.411 5.411 14 Si 0.651 3.349 15 H -0.200 1.200 16 H -0.217 1.217 17 H -0.184 1.184 18 C 0.004 3.996 19 C -0.253 4.253 20 C -0.232 4.232 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.101 0.899 24 H 0.214 0.786 25 H 0.234 0.766 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.695 11.423 0.211 12.352 hybrid contribution 1.150 -0.509 0.170 1.269 sum 5.846 10.914 0.381 12.387 Atomic orbital electron populations 1.20187 0.89197 1.02981 1.01913 1.21370 0.96836 0.90938 1.05294 1.23431 0.80423 0.99061 1.10401 1.83737 1.29170 1.22703 1.72758 1.25078 1.00334 0.80635 1.03496 1.21500 0.92567 0.95416 1.10431 1.16616 0.86314 0.83288 0.84533 1.90604 1.30920 1.79526 1.45257 1.43820 1.26988 1.07258 1.36564 1.18893 1.23913 0.82121 1.23466 0.86485 1.24909 0.98660 0.96581 0.92340 1.70462 1.38340 1.20159 1.12172 0.88076 0.90085 0.76945 0.79758 1.20004 1.21670 1.18402 1.21147 0.87120 0.96696 0.94629 1.23067 0.98301 1.02152 1.01763 1.23595 1.02941 0.96160 1.00504 0.91816 0.92251 0.89910 0.78618 0.76640 0.91361 0.88838 0.90839 0.91482 0.91550 0.93155 0.90554 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.38 36.01 0.37 -1.01 16 2 C -0.14 -2.50 6.16 -102.49 -0.63 -3.13 16 3 C -0.07 -0.97 11.96 29.30 0.35 -0.62 16 4 O -0.19 -2.87 10.52 7.59 0.08 -2.79 16 5 C -0.03 -0.47 7.13 30.10 0.21 -0.26 16 6 C -0.19 -3.95 3.48 -103.28 -0.36 -4.30 16 7 C 0.50 12.62 6.94 -12.58 -0.09 12.53 16 8 O -0.58 -16.68 15.83 5.24 0.08 -16.60 16 9 N -0.43 -10.73 2.45 -108.98 -0.27 -10.99 16 10 C -0.36 -10.19 9.57 -14.99 -0.14 -10.34 16 11 H 0.12 3.70 7.40 -52.49 -0.39 3.32 16 12 C 0.09 2.35 4.72 -17.46 -0.08 2.27 16 13 N -0.78 -21.37 13.96 55.50 0.77 -20.60 16 14 Si 0.83 18.68 22.77 -169.99 -3.87 14.81 16 15 H -0.27 -5.75 6.38 56.52 0.36 -5.39 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.26 -5.77 6.33 56.52 0.36 -5.41 16 18 C 0.11 2.26 2.32 -67.93 -0.16 2.10 16 19 C -0.20 -3.46 6.76 37.16 0.25 -3.21 16 20 C -0.18 -3.10 7.82 37.16 0.29 -2.81 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 1.57 7.26 -51.93 -0.38 1.20 16 24 H 0.20 1.96 8.06 -52.49 -0.42 1.53 16 25 H 0.22 3.30 3.27 -52.49 -0.17 3.12 16 26 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.09 2.06 4.72 -51.93 -0.25 1.82 16 28 H 0.07 1.34 7.03 -51.93 -0.36 0.97 16 29 H 0.07 0.91 6.40 -51.93 -0.33 0.58 16 30 H 0.07 1.22 3.70 -51.93 -0.19 1.03 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.18 4.03 -59.04 -0.24 0.94 16 33 H 0.08 1.63 4.97 -51.93 -0.26 1.37 16 LS Contribution 252.14 15.07 3.80 3.80 Total: -1.00 -31.69 252.14 -2.86 -34.55 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.48 Total: 6.60 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.02 Total: -8.77 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.51 Total: -31.59 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.16 Total: -19.39 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -3.87 Total: 14.81 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.69 -2.86 -34.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705273626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.172 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds