Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46990 * 2 1 4 4 H 1.08993 * 109.47104 * 304.99905 * 3 2 1 5 5 C 1.50702 * 109.46859 * 184.99658 * 3 2 1 6 6 H 1.07997 * 120.00037 * 239.99968 * 5 3 2 7 7 C 1.37882 * 120.00012 * 60.00313 * 5 3 2 8 8 N 1.31515 * 119.99758 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47158 * 89.99691 * 9 7 5 11 11 H 1.48500 * 109.47243 * 209.99764 * 9 7 5 12 12 H 1.48505 * 109.46867 * 329.99842 * 9 7 5 13 13 N 1.46497 * 109.47101 * 65.00080 * 3 2 1 14 14 C 1.33875 * 122.76728 * 59.99574 * 13 3 2 15 15 O 1.21230 * 125.39221 * 0.02562 * 14 13 3 16 16 C 1.51315 * 109.21157 * 180.02562 * 14 13 3 17 17 H 1.09000 * 117.77193 * 221.58482 * 16 14 13 18 18 C 1.52990 * 118.60444 * 62.67215 * 16 14 13 19 19 C 1.53466 * 60.43172 * 270.41514 * 18 16 14 20 20 C 1.53000 * 120.38347 * 247.91966 * 19 18 16 21 21 C 1.33879 * 122.76265 * 239.99917 * 13 3 2 22 22 O 1.21233 * 125.39135 * 359.97435 * 21 13 3 23 23 H 1.09002 * 109.46646 * 60.00123 * 1 2 3 24 24 H 1.08998 * 109.47196 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47129 * 300.00600 * 1 2 3 26 26 H 1.09003 * 109.47302 * 240.00142 * 2 1 3 27 27 H 1.09002 * 109.47110 * 119.99616 * 2 1 3 28 28 H 0.96997 * 119.99749 * 180.02562 * 8 7 5 29 29 H 1.09001 * 117.44879 * 18.17283 * 18 16 14 30 30 H 1.09007 * 117.44351 * 162.88422 * 18 16 14 31 31 H 1.08996 * 109.47349 * 246.85756 * 20 19 18 32 32 H 1.08996 * 109.47070 * 6.86194 * 20 19 18 33 33 H 1.09003 * 109.46837 * 126.85650 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1434 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8812 -1.3817 10 1 6.5548 -0.3502 -0.7601 11 1 6.3830 0.9223 -2.8172 12 1 6.5570 2.0738 -0.6900 13 7 1.6524 2.0975 1.2518 14 6 2.0421 1.6530 2.4530 15 8 2.7429 0.6834 2.6494 16 6 1.4693 2.5524 3.5266 17 1 2.1157 2.8214 4.3619 18 6 -0.0510 2.6421 3.6726 19 6 0.6775 3.6084 2.7288 20 6 0.7468 5.1020 3.0532 21 6 0.8793 3.1899 1.2888 22 8 0.4179 3.7565 0.3215 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8294 -0.0618 -2.9494 29 1 -0.6468 1.8489 3.2210 30 1 -0.4430 3.0510 4.6039 31 1 0.1709 5.6611 2.3158 32 1 0.3334 5.2776 4.0463 33 1 1.7856 5.4313 3.0287 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713532225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = -34.554681 kcal Electronic energy + Delta-G solvation = -17654.337105 eV Core-core repulsion = 14874.521739 eV Total energy + Delta-G solvation = -2779.815367 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.78010 -37.78637 -36.80369 -35.32193 -32.98385 -31.37354 -28.95202 -27.43481 -24.59194 -24.03510 -22.61191 -21.31115 -19.75464 -18.45194 -16.74173 -16.47677 -15.57591 -15.32299 -14.83911 -14.15168 -13.99298 -13.61256 -13.37917 -13.08790 -12.90171 -12.75626 -12.43198 -12.13866 -11.87547 -11.37222 -11.09664 -10.82488 -10.73957 -10.53274 -10.31273 -10.08890 -9.84578 -9.65059 -9.42786 -9.12599 -8.51176 -8.37224 -6.13125 -4.20039 1.89722 3.27241 3.29458 3.33657 3.35770 3.44287 3.50255 4.26929 4.37283 4.52253 4.58144 4.75755 5.18717 5.30590 5.47810 5.53919 5.70941 5.78632 5.83953 6.09531 6.11351 6.14203 6.33100 6.56030 6.81438 6.86250 7.04500 7.37064 7.61803 7.82436 7.93752 8.05067 8.21333 8.56187 8.81650 9.44915 10.92643 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028148 B = 0.009137 C = 0.008655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.514338 B = 3063.724890 C = 3234.166241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.260 3.740 4 H 0.065 0.935 5 C -0.521 4.521 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.904 3.096 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.549 5.549 14 C 0.550 3.450 15 O -0.461 6.461 16 C -0.202 4.202 17 H 0.149 0.851 18 C -0.087 4.087 19 C -0.180 4.180 20 C -0.095 4.095 21 C 0.553 3.447 22 O -0.485 6.485 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.027 0.973 26 H 0.110 0.890 27 H 0.053 0.947 28 H 0.265 0.735 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 4.918 10.539 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.162 3.838 4 H 0.083 0.917 5 C -0.559 4.559 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.732 3.268 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.288 5.288 14 C 0.336 3.664 15 O -0.332 6.332 16 C -0.223 4.223 17 H 0.167 0.833 18 C -0.124 4.124 19 C -0.184 4.184 20 C -0.152 4.152 21 C 0.340 3.660 22 O -0.358 6.358 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.128 0.872 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.083 4.565 9.855 12.449 hybrid contribution 1.089 -0.024 -0.105 1.094 sum -4.994 4.541 9.751 11.859 Atomic orbital electron populations 1.21816 0.98978 0.99631 0.99862 1.21976 0.91950 0.99053 1.04446 1.19332 0.95999 0.90032 0.78396 0.91691 1.21146 0.89976 1.38840 1.05929 0.92168 1.24841 0.98881 0.94665 0.95191 1.69851 1.35221 1.38013 1.09516 0.86386 0.84636 0.78639 0.77157 1.20385 1.21020 1.19892 1.47026 1.44190 1.26531 1.11094 1.19526 0.79540 0.83995 0.83299 1.90701 1.33465 1.25089 1.83916 1.23767 0.96426 1.00555 1.01593 0.83311 1.23101 0.91147 0.98770 0.99408 1.22842 1.08292 0.95643 0.91618 1.21009 1.02807 0.89484 1.01939 1.19569 0.77300 0.79692 0.89424 1.90679 1.48869 1.55597 1.40621 0.93345 0.94111 0.95379 0.87186 0.92802 0.92491 0.87903 0.85853 0.90623 0.91382 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.80 37.16 0.36 -2.64 16 2 C -0.14 -3.32 5.17 -26.73 -0.14 -3.46 16 3 C 0.26 6.72 2.08 -69.08 -0.14 6.57 16 4 H 0.07 1.85 7.41 -51.93 -0.38 1.46 16 5 C -0.52 -14.62 7.96 -34.44 -0.27 -14.90 16 6 H 0.06 1.73 7.65 -52.49 -0.40 1.33 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.10 11.29 55.43 0.63 -24.47 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.55 -12.12 1.92 -109.49 -0.21 -12.33 16 14 C 0.55 11.24 7.10 -11.09 -0.08 11.16 16 15 O -0.46 -10.90 15.68 5.60 0.09 -10.81 16 16 C -0.20 -2.90 7.05 -90.83 -0.64 -3.54 16 17 H 0.15 1.75 8.14 -51.93 -0.42 1.32 16 18 C -0.09 -0.98 9.90 -26.49 -0.26 -1.24 16 19 C -0.18 -2.60 3.01 -154.48 -0.47 -3.06 16 20 C -0.10 -1.07 10.17 37.16 0.38 -0.70 16 21 C 0.55 11.10 7.60 -11.09 -0.08 11.02 16 22 O -0.48 -11.05 17.23 5.60 0.10 -10.95 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.54 7.75 -51.93 -0.40 0.13 16 26 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 27 H 0.05 1.36 6.50 -51.93 -0.34 1.02 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 280.74 15.07 4.23 4.23 Total: -1.00 -31.56 280.74 -5.98 -37.54 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.35 Total: -0.93 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.44 Total: 0.98 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.42 Total: -36.80 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.18 Total: -21.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.56 -5.98 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713532225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.982 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds