Wall clock time and date at job start Mon Mar 30 2020 03:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09003 * 109.46970 * 55.00161 * 3 2 1 5 5 C 1.50700 * 109.47579 * 174.99955 * 3 2 1 6 6 H 1.08001 * 119.99816 * 119.99826 * 5 3 2 7 7 C 1.37876 * 119.99920 * 300.00349 * 5 3 2 8 8 N 1.31510 * 120.00234 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99914 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47439 * 90.00122 * 9 7 5 11 11 H 1.48507 * 109.47150 * 209.99948 * 9 7 5 12 12 H 1.48501 * 109.47349 * 329.99637 * 9 7 5 13 13 N 1.46505 * 109.47180 * 295.00250 * 3 2 1 14 14 C 1.33875 * 122.75809 * 299.99614 * 13 3 2 15 15 O 1.21225 * 125.40103 * 0.04056 * 14 13 3 16 16 C 1.51317 * 109.20629 * 179.97438 * 14 13 3 17 17 H 1.08997 * 117.77694 * 221.58300 * 16 14 13 18 18 C 1.52999 * 118.60047 * 62.67500 * 16 14 13 19 19 C 1.53001 * 60.53164 * 270.52405 * 18 16 14 20 20 C 1.53000 * 120.10946 * 247.87638 * 19 18 16 21 21 C 1.33870 * 122.76192 * 119.99735 * 13 3 2 22 22 O 1.21228 * 125.40276 * 359.97438 * 21 13 3 23 23 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46613 * 300.00067 * 1 2 3 25 25 H 1.08996 * 109.47063 * 59.99833 * 1 2 3 26 26 H 1.08996 * 109.47260 * 239.99811 * 2 1 3 27 27 H 1.09005 * 109.46961 * 120.00027 * 2 1 3 28 28 H 0.97004 * 120.00674 * 179.97438 * 8 7 5 29 29 H 1.09001 * 117.44239 * 162.88409 * 18 16 14 30 30 H 1.09002 * 117.45006 * 18.16817 * 18 16 14 31 31 H 1.08998 * 109.47201 * 246.71834 * 20 19 18 32 32 H 1.09000 * 109.47110 * 6.71977 * 20 19 18 33 33 H 1.08994 * 109.46909 * 126.71680 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3811 10 1 6.4429 2.1128 2.0837 11 1 6.4391 -0.3112 2.1545 12 1 6.6132 0.8393 0.0269 13 7 1.6525 2.0974 -1.2518 14 6 2.0423 1.6529 -2.4529 15 8 2.7421 0.6828 -2.6494 16 6 1.4695 2.5523 -3.5265 17 1 1.0736 2.0809 -4.4261 18 6 1.8925 4.0224 -3.5529 19 6 0.6727 3.6048 -2.7291 20 6 -0.7275 4.0589 -3.1466 21 6 0.8795 3.1898 -1.2887 22 8 0.4173 3.7560 -0.3216 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8293 -0.0612 2.9499 29 1 1.7111 4.5809 -4.4713 30 1 2.7969 4.2949 -3.0089 31 1 -1.1256 4.7437 -2.3979 32 1 -0.6729 4.5656 -4.1101 33 1 -1.3813 3.1908 -3.2292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713532229.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:44 Heat of formation + Delta-G solvation = -34.570259 kcal Electronic energy + Delta-G solvation = -17651.485200 eV Core-core repulsion = 14871.669158 eV Total energy + Delta-G solvation = -2779.816042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.77972 -37.78533 -36.82603 -35.31899 -32.98604 -31.36173 -28.92482 -27.48845 -24.56639 -24.02917 -22.61002 -21.29793 -19.73571 -18.48784 -16.81819 -16.33318 -15.58627 -15.29338 -14.85927 -14.21104 -13.97570 -13.66340 -13.38107 -13.05222 -12.83127 -12.78403 -12.40615 -12.14113 -11.86811 -11.36951 -11.13514 -10.86098 -10.67862 -10.53833 -10.29413 -10.05261 -9.85795 -9.66627 -9.42224 -9.13546 -8.48948 -8.38447 -6.13307 -4.20403 1.90161 3.21374 3.27740 3.33647 3.40681 3.46920 3.54806 4.29206 4.35849 4.51141 4.59135 4.76378 5.18370 5.32309 5.49886 5.55077 5.68243 5.77906 5.87779 6.07115 6.12341 6.15670 6.34108 6.56653 6.82889 6.86671 7.05312 7.37681 7.61754 7.82261 7.93785 8.05332 8.21374 8.56431 8.81199 9.44612 10.92441 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028439 B = 0.009285 C = 0.008532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.331457 B = 3014.998402 C = 3280.906754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.260 3.740 4 H 0.065 0.935 5 C -0.521 4.521 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.549 5.549 14 C 0.549 3.451 15 O -0.461 6.461 16 C -0.203 4.203 17 H 0.149 0.851 18 C -0.086 4.086 19 C -0.181 4.181 20 C -0.095 4.095 21 C 0.553 3.447 22 O -0.485 6.485 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.110 0.890 28 H 0.265 0.735 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 5.235 -10.523 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.162 3.838 4 H 0.083 0.917 5 C -0.559 4.559 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.288 5.288 14 C 0.336 3.664 15 O -0.332 6.332 16 C -0.224 4.224 17 H 0.167 0.833 18 C -0.123 4.123 19 C -0.184 4.184 20 C -0.152 4.152 21 C 0.340 3.660 22 O -0.358 6.358 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.675 4.846 -9.847 12.355 hybrid contribution 0.923 -0.127 0.109 0.938 sum -4.752 4.719 -9.738 11.819 Atomic orbital electron populations 1.21814 0.98967 0.99619 0.99918 1.21968 0.91972 0.99044 1.04412 1.19333 0.95957 0.90077 0.78386 0.91707 1.21138 0.89959 1.38894 1.05933 0.92182 1.24837 0.98879 0.94632 0.95212 1.69850 1.35250 1.38006 1.09461 0.86399 0.84641 0.77614 0.78277 1.20547 1.20924 1.19710 1.47024 1.44135 1.26604 1.11078 1.19529 0.79165 0.84424 0.83279 1.90700 1.33005 1.25619 1.83828 1.23752 1.06003 0.91452 1.01228 0.83347 1.23037 0.96335 0.92502 1.00469 1.22763 0.97406 1.06006 0.92261 1.21014 0.91042 1.01589 1.01587 1.19559 0.77181 0.79872 0.89363 1.90678 1.48474 1.56071 1.40557 0.94152 0.93368 0.95274 0.92806 0.87224 0.92483 0.85855 0.87670 0.90623 0.91355 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.80 37.16 0.36 -2.68 16 2 C -0.14 -3.33 5.17 -26.74 -0.14 -3.47 16 3 C 0.26 6.72 2.08 -69.08 -0.14 6.57 16 4 H 0.07 1.84 7.41 -51.93 -0.38 1.46 16 5 C -0.52 -14.57 7.96 -34.44 -0.27 -14.85 16 6 H 0.06 1.71 7.65 -52.49 -0.40 1.31 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -25.08 11.29 55.43 0.63 -24.45 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.55 -12.12 1.92 -109.49 -0.21 -12.33 16 14 C 0.55 11.24 7.10 -11.09 -0.08 11.16 16 15 O -0.46 -10.92 15.68 5.60 0.09 -10.83 16 16 C -0.20 -2.92 7.07 -90.83 -0.64 -3.56 16 17 H 0.15 1.69 8.14 -51.93 -0.42 1.27 16 18 C -0.09 -1.02 9.87 -26.73 -0.26 -1.28 16 19 C -0.18 -2.60 3.00 -154.71 -0.46 -3.06 16 20 C -0.10 -1.04 10.16 37.16 0.38 -0.66 16 21 C 0.55 11.10 7.61 -11.09 -0.08 11.02 16 22 O -0.48 -11.05 17.23 5.60 0.10 -10.95 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.03 0.57 7.75 -51.93 -0.40 0.17 16 26 H 0.05 1.36 6.50 -51.93 -0.34 1.02 16 27 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -31.52 280.70 -5.98 -37.50 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.35 Total: -0.78 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.44 Total: 0.95 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.42 Total: -36.78 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.18 Total: -21.78 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.52 -5.98 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713532229.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.932 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds