Wall clock time and date at job start Mon Mar 30 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08992 * 109.70851 * 283.58808 * 3 2 1 5 5 C 1.52883 * 109.61773 * 163.28198 * 3 2 1 6 6 O 1.42959 * 109.30098 * 188.11400 * 5 3 2 7 7 C 1.42963 * 114.16495 * 62.45027 * 6 5 3 8 8 C 1.53300 * 109.22333 * 297.42102 * 7 6 5 9 9 N 1.47154 * 108.38538 * 52.30321 * 8 7 6 10 10 C 1.34767 * 120.98286 * 129.43987 * 9 8 7 11 11 O 1.21287 * 120.00070 * 184.85132 * 10 9 8 12 12 C 1.50700 * 120.00214 * 4.85722 * 10 9 8 13 13 H 1.09001 * 109.47189 * 307.08008 * 12 10 9 14 14 C 1.53000 * 109.46912 * 67.07828 * 12 10 9 15 15 C 1.50703 * 109.47457 * 187.07791 * 12 10 9 16 16 H 1.08006 * 119.99799 * 354.54008 * 15 12 10 17 17 C 1.37869 * 120.00127 * 174.54285 * 15 12 10 18 18 N 1.31516 * 120.00424 * 346.73350 * 17 15 12 19 19 Si 1.86804 * 120.00060 * 166.72766 * 17 15 12 20 20 H 1.48499 * 109.46968 * 59.99729 * 19 17 15 21 21 H 1.48503 * 109.46866 * 300.00289 * 19 17 15 22 22 H 1.48500 * 109.47298 * 180.02562 * 19 17 15 23 23 H 4.19108 * 14.98026 * 359.97438 * 4 2 1 24 24 H 1.09001 * 109.57866 * 68.10483 * 5 3 2 25 25 H 1.09000 * 109.40860 * 308.02762 * 5 3 2 26 26 H 1.09002 * 109.51356 * 177.49785 * 7 6 5 27 27 H 1.09000 * 109.55529 * 57.36851 * 7 6 5 28 28 H 1.09003 * 109.68223 * 292.57917 * 8 7 6 29 29 H 1.08995 * 109.71150 * 172.04048 * 8 7 6 30 30 H 1.09002 * 109.47065 * 174.15685 * 14 12 10 31 31 H 1.09000 * 109.47429 * 294.15204 * 14 12 10 32 32 H 1.09001 * 109.47672 * 54.15591 * 14 12 10 33 33 H 0.97003 * 119.99427 * 1.84950 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0137 -0.2402 0.9974 5 6 3.1587 1.3801 -0.4143 6 8 4.5755 1.3227 -0.5957 7 6 4.9970 0.4371 -1.6358 8 6 4.5794 -0.9944 -1.2799 9 7 3.1420 -0.9937 -0.9647 10 6 2.3038 -1.8741 -1.5465 11 8 1.1106 -1.8017 -1.3417 12 6 2.8491 -2.9487 -2.4516 13 1 3.4750 -2.4939 -3.2194 14 6 3.6841 -3.9325 -1.6296 15 6 1.7066 -3.6829 -3.1047 16 1 0.6886 -3.4600 -2.8206 17 6 1.9607 -4.6392 -4.0648 18 7 3.1586 -4.7322 -4.5995 19 14 0.6034 -5.8030 -4.6061 20 1 -0.5249 -5.0194 -5.1700 21 1 0.1272 -6.5857 -3.4373 22 1 1.1292 -6.7296 -5.6407 23 1 -1.0500 0.0004 0.0003 24 1 2.9202 2.1068 0.3624 25 1 2.6836 1.6774 -1.3492 26 1 6.0812 0.4853 -1.7380 27 1 4.5293 0.7297 -2.5759 28 1 5.1451 -1.3371 -0.4135 29 1 4.7692 -1.6539 -2.1266 30 1 3.9921 -4.7648 -2.2624 31 1 4.5673 -3.4244 -1.2423 32 1 3.0880 -4.3092 -0.7984 33 1 3.8706 -4.1457 -4.2992 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854916741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:06 Heat of formation + Delta-G solvation = -10.250121 kcal Electronic energy + Delta-G solvation = -17413.077445 eV Core-core repulsion = 14634.316003 eV Total energy + Delta-G solvation = -2778.761442 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15431 -37.92232 -34.66484 -34.39235 -33.10006 -30.40538 -30.12814 -27.50819 -24.98443 -24.45889 -22.98118 -21.33999 -19.60638 -17.71265 -16.82038 -16.36345 -16.18141 -15.64509 -15.17938 -14.99469 -14.47345 -13.75929 -13.65742 -13.26969 -12.75773 -12.33844 -12.16402 -11.69267 -11.52900 -11.16498 -10.94067 -10.80817 -10.65802 -10.57905 -10.18498 -10.15123 -10.05524 -9.95838 -8.75455 -8.24935 -8.18267 -7.96758 -6.41012 -4.07814 2.89315 3.22995 3.45976 3.47623 3.56634 3.66589 3.67807 3.89732 4.52970 4.59250 4.85809 5.03855 5.05956 5.25795 5.30806 5.32481 5.55691 5.64517 5.73453 5.86638 5.95668 6.26942 6.28565 6.50163 6.57776 6.80001 7.00585 7.02356 7.33195 7.80138 8.13925 8.16704 8.54389 8.86183 9.07673 9.59773 10.97071 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031380 B = 0.008024 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.062115 B = 3488.738694 C = 4112.760901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.180 4.180 3 C 0.227 3.773 4 H 0.090 0.910 5 C 0.060 3.940 6 O -0.379 6.379 7 C 0.043 3.957 8 C 0.077 3.923 9 N -0.630 5.630 10 C 0.526 3.474 11 O -0.511 6.511 12 C 0.019 3.981 13 H 0.041 0.959 14 C -0.137 4.137 15 C -0.586 4.586 16 H 0.067 0.933 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 1.069 2.931 20 H -0.288 1.288 21 H -0.287 1.287 22 H -0.283 1.283 23 H 0.212 0.788 24 H 0.106 0.894 25 H 0.059 0.941 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.041 0.959 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 9.702 7.466 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.181 4.181 3 C 0.124 3.876 4 H 0.108 0.892 5 C -0.018 4.018 6 O -0.297 6.297 7 C -0.034 4.034 8 C -0.046 4.046 9 N -0.369 5.369 10 C 0.317 3.683 11 O -0.384 6.384 12 C -0.002 4.002 13 H 0.058 0.942 14 C -0.195 4.195 15 C -0.624 4.624 16 H 0.086 0.914 17 C -0.182 4.182 18 N -0.545 5.545 19 Si 0.897 3.103 20 H -0.214 1.214 21 H -0.213 1.213 22 H -0.209 1.209 23 H 0.229 0.771 24 H 0.124 0.876 25 H 0.077 0.923 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.843 8.560 6.627 11.193 hybrid contribution 0.092 1.046 0.923 1.398 sum 2.936 9.607 7.549 12.566 Atomic orbital electron populations 1.24493 0.95434 0.99639 0.99140 1.21816 0.93198 1.01278 1.01812 1.18346 0.85471 0.89974 0.93816 0.89204 1.22858 0.81539 0.95371 1.02044 1.87931 1.21603 1.64397 1.55815 1.23083 1.00765 0.89019 0.90534 1.22459 0.81385 0.97933 1.02797 1.48603 1.08348 1.34707 1.45215 1.21728 0.86306 0.81032 0.79273 1.90668 1.15749 1.71381 1.60643 1.18979 0.97710 0.90950 0.92590 0.94155 1.21882 0.97259 1.00578 0.99770 1.21858 0.93303 1.22772 1.24499 0.91430 1.25806 1.01229 0.97722 0.93421 1.70861 1.03011 1.40665 1.39942 0.83542 0.74522 0.76042 0.76225 1.21419 1.21349 1.20851 0.77136 0.87622 0.92310 0.87535 0.92409 0.90944 0.87618 0.91522 0.95493 0.94032 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 17.76 29.55 0.52 -2.45 16 2 C -0.18 -3.32 10.08 -37.12 -0.37 -3.69 16 3 C 0.23 3.71 3.51 -70.42 -0.25 3.46 16 4 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 5 C 0.06 0.81 6.23 37.10 0.23 1.04 16 6 O -0.38 -5.13 10.74 -35.23 -0.38 -5.51 16 7 C 0.04 0.54 6.98 37.31 0.26 0.80 16 8 C 0.08 1.14 5.20 -3.53 -0.02 1.12 16 9 N -0.63 -11.62 3.03 -168.17 -0.51 -12.13 16 10 C 0.53 12.25 6.90 -10.99 -0.08 12.17 16 11 O -0.51 -13.37 11.53 5.55 0.06 -13.30 16 12 C 0.02 0.47 1.42 -92.92 -0.13 0.33 16 13 H 0.04 1.01 6.27 -51.93 -0.33 0.68 16 14 C -0.14 -3.04 8.63 37.16 0.32 -2.72 16 15 C -0.59 -16.80 8.28 -34.44 -0.29 -17.09 16 16 H 0.07 2.07 6.81 -52.48 -0.36 1.72 16 17 C 0.02 0.62 5.08 -17.82 -0.09 0.53 16 18 N -0.91 -26.35 13.02 55.43 0.72 -25.63 16 19 Si 1.07 25.60 29.92 -169.99 -5.09 20.51 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.21 2.99 7.80 -54.09 -0.42 2.57 16 24 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 26 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.11 1.63 5.18 -51.93 -0.27 1.36 16 30 H 0.07 1.59 6.66 -51.93 -0.35 1.25 16 31 H 0.03 0.49 6.10 -51.93 -0.32 0.17 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.27 7.53 6.38 -40.82 -0.26 7.27 16 LS Contribution 271.79 15.07 4.10 4.10 Total: -1.00 -33.24 271.79 -5.03 -38.27 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.05 Total: 0.18 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 0.11 Total: -6.49 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.21 Total: -37.76 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.31 Total: -18.81 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.09 Total: 20.51 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.24 -5.03 -38.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854916741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.021 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds