Wall clock time and date at job start Mon Mar 30 2020 03:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99579 * 2 1 4 4 H 1.48507 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47063 * 300.00269 * 3 2 1 6 6 H 1.48498 * 109.47176 * 60.00532 * 3 2 1 7 7 C 1.37872 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00279 * 179.72159 * 7 2 1 9 9 C 1.50700 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47057 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47090 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00163 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99888 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00130 * 179.97438 * 12 11 10 15 15 H 1.08997 * 110.35638 * 39.48989 * 14 12 11 16 16 C 1.54579 * 110.40079 * 161.93841 * 14 12 11 17 17 C 1.55929 * 104.64248 * 118.79292 * 16 14 12 18 18 H 1.09005 * 116.53216 * 160.39602 * 17 16 14 19 19 C 1.55922 * 104.50001 * 289.72119 * 17 16 14 20 20 C 1.54587 * 104.64520 * 70.27519 * 19 17 16 21 21 C 1.55922 * 110.40330 * 277.16056 * 14 12 11 22 22 H 1.09005 * 115.92287 * 81.17399 * 21 14 12 23 23 C 1.56947 * 100.65155 * 33.77878 * 17 16 14 24 24 H 0.96995 * 120.00314 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46897 * 300.00022 * 9 7 2 26 26 H 1.09002 * 109.46857 * 60.00292 * 9 7 2 27 27 H 1.08999 * 109.47407 * 300.00345 * 10 9 7 28 28 H 1.09002 * 109.46950 * 60.00470 * 10 9 7 29 29 H 0.97006 * 119.99914 * 0.02562 * 11 10 9 30 30 H 1.09002 * 110.40510 * 237.58021 * 16 14 12 31 31 H 1.08999 * 110.40313 * 0.02562 * 16 14 12 32 32 H 1.08998 * 110.40728 * 189.06752 * 19 17 16 33 33 H 1.08999 * 110.40365 * 311.37056 * 19 17 16 34 34 H 1.08997 * 110.40250 * 241.21239 * 20 19 17 35 35 H 1.09002 * 110.40026 * 118.79112 * 20 19 17 36 36 H 1.09006 * 112.02778 * 189.69458 * 23 17 16 37 37 H 1.09005 * 112.02839 * 63.17158 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0051 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5131 -4.9307 -0.0024 12 6 2.1870 -6.0979 -0.0031 13 8 3.3998 -6.0978 -0.0036 14 6 1.4336 -7.4030 -0.0031 15 1 0.5607 -7.3369 -0.6526 16 6 2.3569 -8.5582 -0.4531 17 6 2.3989 -9.5275 0.7676 18 1 2.7137 -10.5514 0.5657 19 6 3.2235 -8.7612 1.8465 20 6 2.3002 -7.6059 2.2964 21 6 1.0047 -7.7832 1.4470 22 1 0.1059 -7.2934 1.8219 23 6 0.9453 -9.3473 1.3313 24 1 -0.4850 0.8400 0.0004 25 1 0.6249 -2.5570 0.8896 26 1 0.6242 -2.5567 -0.8903 27 1 2.8715 -3.6038 -0.8922 28 1 2.8728 -3.6046 0.8878 29 1 0.5430 -4.9308 -0.0024 30 1 1.9382 -9.0622 -1.3242 31 1 3.3559 -8.1822 -0.6738 32 1 3.4501 -9.4162 2.6878 33 1 4.1433 -8.3682 1.4135 34 1 2.7651 -6.6432 2.0840 35 1 2.0728 -7.6930 3.3589 36 1 0.8217 -9.8247 2.3035 37 1 0.1873 -9.6761 0.6203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:04 Heat of formation + Delta-G solvation = -56.760369 kcal Electronic energy + Delta-G solvation = -16993.928789 eV Core-core repulsion = 14348.983606 eV Total energy + Delta-G solvation = -2644.945183 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86505 -38.08910 -34.79121 -32.83741 -30.87456 -29.86900 -28.96092 -27.81614 -24.84897 -22.60475 -20.96007 -20.50266 -20.01406 -18.47594 -16.83427 -16.41197 -16.24350 -15.61357 -14.88026 -14.51237 -14.27874 -13.77628 -13.06783 -12.71802 -12.37550 -12.28143 -11.97506 -11.52034 -11.33387 -11.19166 -11.10913 -11.04496 -11.00450 -10.82468 -10.61113 -10.41646 -10.27012 -9.94711 -9.72753 -9.40024 -9.09035 -8.52053 -8.32588 -6.09514 -4.12254 3.04954 3.28185 3.35702 3.40738 3.75383 4.39069 4.41645 4.46655 4.55106 5.06604 5.18789 5.20711 5.27648 5.32055 5.38952 5.40592 5.48190 5.60091 5.73201 5.85277 5.99320 6.02892 6.08687 6.18836 6.28257 6.31218 6.36324 6.38931 6.47921 6.75548 6.98310 7.52677 7.62306 7.89079 8.08021 8.28728 8.72750 8.94199 9.52735 11.02163 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.055199 B = 0.004524 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.130225 B = 6188.072666 C = 6292.972392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.723 5.723 12 C 0.515 3.485 13 O -0.549 6.549 14 C -0.114 4.114 15 H 0.089 0.911 16 C -0.109 4.109 17 C -0.104 4.104 18 H 0.096 0.904 19 C -0.117 4.117 20 C -0.129 4.129 21 C -0.090 4.090 22 H 0.102 0.898 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.397 0.603 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 -18.210 2.097 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.301 3.699 13 O -0.428 6.428 14 C -0.136 4.136 15 H 0.107 0.893 16 C -0.147 4.147 17 C -0.122 4.122 18 H 0.114 0.886 19 C -0.154 4.154 20 C -0.166 4.166 21 C -0.109 4.109 22 H 0.120 0.880 23 C -0.160 4.160 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.230 0.770 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.795 -18.041 2.089 18.179 hybrid contribution -0.180 1.103 -0.027 1.118 sum 0.614 -16.938 2.063 17.074 Atomic orbital electron populations 1.69963 1.06094 1.26753 1.50538 1.24994 0.94880 0.99404 0.94996 0.86469 0.80185 0.83365 0.77623 1.19581 1.20928 1.20918 1.21098 0.93270 0.90420 1.51146 0.92237 1.19326 0.94216 0.91194 0.97796 1.21692 0.96017 0.81745 1.00611 1.46366 1.10458 1.06592 1.73771 1.20376 0.88224 0.85423 0.75894 1.90633 1.14059 1.87583 1.50559 1.22407 0.99092 0.93447 0.98644 0.89269 1.22586 1.00912 0.94211 0.96991 1.23551 0.95400 0.97738 0.95532 0.88551 1.22564 0.98726 0.96426 0.97709 1.22727 0.95086 1.00029 0.98777 1.23510 0.97879 0.96171 0.93354 0.87958 1.23591 0.96771 0.95023 1.00622 0.92908 0.95957 0.95998 0.92713 0.92731 0.77001 0.91839 0.89483 0.92511 0.91066 0.90621 0.92102 0.91171 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 11 N -0.72 -12.75 5.56 -60.29 -0.33 -13.09 16 12 C 0.51 8.70 5.44 -10.99 -0.06 8.64 16 13 O -0.55 -11.09 14.46 5.55 0.08 -11.01 16 14 C -0.11 -1.45 3.09 -89.38 -0.28 -1.73 16 15 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.11 -1.30 5.75 -24.34 -0.14 -1.44 16 17 C -0.10 -1.07 5.19 -85.36 -0.44 -1.51 16 18 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.12 -1.38 6.21 -24.34 -0.15 -1.53 16 20 C -0.13 -1.65 5.90 -24.33 -0.14 -1.80 16 21 C -0.09 -1.02 4.92 -85.35 -0.42 -1.44 16 22 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 23 C -0.12 -1.15 6.42 -22.45 -0.14 -1.30 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.40 6.12 8.47 -40.82 -0.35 5.77 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.25 6.35 -51.93 -0.33 0.92 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 34 H 0.08 1.21 5.66 -51.93 -0.29 0.92 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -30.70 294.43 -8.45 -39.15 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.99 Total: 2.21 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.35 Total: -12.64 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.40 Total: -38.58 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.70 -8.45 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.612 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds