Wall clock time and date at job start Mon Mar 30 2020 03:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99579 * 2 1 4 4 H 1.48507 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47063 * 300.00269 * 3 2 1 6 6 H 1.48498 * 109.47176 * 60.00532 * 3 2 1 7 7 C 1.37872 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00279 * 179.72159 * 7 2 1 9 9 C 1.50700 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47057 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47090 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00163 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99888 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00130 * 179.97438 * 12 11 10 15 15 H 1.08997 * 110.35638 * 39.48989 * 14 12 11 16 16 C 1.54579 * 110.40079 * 161.93841 * 14 12 11 17 17 C 1.55929 * 104.64248 * 118.79292 * 16 14 12 18 18 H 1.09005 * 116.53216 * 160.39602 * 17 16 14 19 19 C 1.55922 * 104.50001 * 289.72119 * 17 16 14 20 20 C 1.54587 * 104.64520 * 70.27519 * 19 17 16 21 21 C 1.55922 * 110.40330 * 277.16056 * 14 12 11 22 22 H 1.09005 * 115.92287 * 81.17399 * 21 14 12 23 23 C 1.56947 * 100.65155 * 33.77878 * 17 16 14 24 24 H 0.96995 * 120.00314 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46897 * 300.00022 * 9 7 2 26 26 H 1.09002 * 109.46857 * 60.00292 * 9 7 2 27 27 H 1.08999 * 109.47407 * 300.00345 * 10 9 7 28 28 H 1.09002 * 109.46950 * 60.00470 * 10 9 7 29 29 H 0.97006 * 119.99914 * 0.02562 * 11 10 9 30 30 H 1.09002 * 110.40510 * 237.58021 * 16 14 12 31 31 H 1.08999 * 110.40313 * 0.02562 * 16 14 12 32 32 H 1.08998 * 110.40728 * 189.06752 * 19 17 16 33 33 H 1.08999 * 110.40365 * 311.37056 * 19 17 16 34 34 H 1.08997 * 110.40250 * 241.21239 * 20 19 17 35 35 H 1.09002 * 110.40026 * 118.79112 * 20 19 17 36 36 H 1.09006 * 112.02778 * 189.69458 * 23 17 16 37 37 H 1.09005 * 112.02839 * 63.17158 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0051 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5131 -4.9307 -0.0024 12 6 2.1870 -6.0979 -0.0031 13 8 3.3998 -6.0978 -0.0036 14 6 1.4336 -7.4030 -0.0031 15 1 0.5607 -7.3369 -0.6526 16 6 2.3569 -8.5582 -0.4531 17 6 2.3989 -9.5275 0.7676 18 1 2.7137 -10.5514 0.5657 19 6 3.2235 -8.7612 1.8465 20 6 2.3002 -7.6059 2.2964 21 6 1.0047 -7.7832 1.4470 22 1 0.1059 -7.2934 1.8219 23 6 0.9453 -9.3473 1.3313 24 1 -0.4850 0.8400 0.0004 25 1 0.6249 -2.5570 0.8896 26 1 0.6242 -2.5567 -0.8903 27 1 2.8715 -3.6038 -0.8922 28 1 2.8728 -3.6046 0.8878 29 1 0.5430 -4.9308 -0.0024 30 1 1.9382 -9.0622 -1.3242 31 1 3.3559 -8.1822 -0.6738 32 1 3.4501 -9.4162 2.6878 33 1 4.1433 -8.3682 1.4135 34 1 2.7651 -6.6432 2.0840 35 1 2.0728 -7.6930 3.3589 36 1 0.8217 -9.8247 2.3035 37 1 0.1873 -9.6761 0.6203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:04 Heat of formation + Delta-G solvation = -75.863952 kcal Electronic energy + Delta-G solvation = -16994.757183 eV Core-core repulsion = 14348.983606 eV Total energy + Delta-G solvation = -2645.773576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.95068 -39.38709 -36.54580 -34.82128 -32.20659 -31.22037 -30.16672 -28.72572 -26.75197 -23.91715 -22.71691 -21.74865 -20.89238 -19.60492 -18.58623 -17.88842 -17.36170 -16.80476 -16.50192 -16.33781 -15.74054 -15.16084 -14.54921 -14.34575 -13.73447 -13.33608 -13.25441 -13.07022 -12.93210 -12.54271 -12.52253 -12.27337 -12.17561 -11.99833 -11.85472 -11.75990 -11.61596 -11.44557 -11.31130 -10.85714 -10.62729 -10.61841 -9.98607 -8.26174 -6.36900 1.39449 1.40333 1.53577 1.70336 2.28952 2.46735 3.08460 3.49409 3.56132 3.60880 4.03538 4.19083 4.32672 4.36003 4.42433 4.46729 4.48140 4.52253 4.58877 4.69723 4.82312 4.95548 5.05040 5.09637 5.18189 5.23753 5.26191 5.31023 5.35503 5.38490 5.51297 5.55494 5.56394 5.77278 6.14479 6.68126 6.76367 7.32709 7.34490 8.85922 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.055199 B = 0.004524 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.130225 B = 6188.072666 C = 6292.972392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.142 3.858 11 N -0.720 5.720 12 C 0.513 3.487 13 O -0.587 6.587 14 C -0.110 4.110 15 H 0.115 0.885 16 C -0.112 4.112 17 C -0.096 4.096 18 H 0.120 0.880 19 C -0.119 4.119 20 C -0.135 4.135 21 C -0.090 4.090 22 H 0.115 0.885 23 C -0.108 4.108 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.409 0.591 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -19.636 2.209 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.370 5.370 12 C 0.301 3.699 13 O -0.468 6.468 14 C -0.132 4.132 15 H 0.133 0.867 16 C -0.150 4.150 17 C -0.114 4.114 18 H 0.138 0.862 19 C -0.156 4.156 20 C -0.172 4.172 21 C -0.108 4.108 22 H 0.133 0.867 23 C -0.145 4.145 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.245 0.755 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.153 -19.490 2.201 19.614 hybrid contribution 0.138 1.538 -0.046 1.545 sum -0.015 -17.952 2.155 18.080 Atomic orbital electron populations 1.70058 1.07519 1.27991 1.50986 1.25859 0.95795 1.03055 0.94313 0.85399 0.78894 0.78752 0.78013 1.19115 1.20075 1.20071 1.21490 0.93489 0.92039 1.51620 0.92560 1.19125 0.94180 0.91759 0.96316 1.21158 0.95018 0.82717 0.99302 1.46215 1.10985 1.05637 1.74192 1.21223 0.88017 0.86392 0.74231 1.90618 1.16054 1.88165 1.51921 1.22511 0.99448 0.90680 1.00531 0.86732 1.22614 0.99105 0.94432 0.98840 1.23618 0.95905 0.98122 0.93767 0.86173 1.22563 0.97623 0.96547 0.98912 1.22736 0.96185 0.98370 0.99932 1.23628 0.97298 0.98328 0.91584 0.86652 1.23557 0.96266 0.92771 1.01938 0.92474 0.97306 0.97314 0.93976 0.94122 0.75531 0.89508 0.92674 0.90784 0.94034 0.94722 0.91015 0.89669 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.61 13.29 21.45 0.28 -54.32 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.55 -31.20 9.11 25.60 0.23 -30.96 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.14 6.34 5.61 86.38 0.48 6.83 16 11 N -0.72 -25.79 5.56 -463.06 -2.57 -28.36 16 12 C 0.51 17.56 5.44 87.66 0.48 18.03 16 13 O -0.59 -24.73 14.46 -3.05 -0.04 -24.77 16 14 C -0.11 -2.62 3.09 -9.99 -0.03 -2.65 16 15 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 16 C -0.11 -2.48 5.75 32.15 0.18 -2.30 16 17 C -0.10 -1.70 5.19 -7.38 -0.04 -1.74 16 18 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 19 C -0.12 -2.70 6.21 32.15 0.20 -2.51 16 20 C -0.13 -3.39 5.90 32.15 0.19 -3.20 16 21 C -0.09 -1.82 4.92 -7.38 -0.04 -1.85 16 22 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 23 C -0.11 -1.58 6.42 33.36 0.21 -1.37 16 24 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.41 12.53 8.47 -92.70 -0.79 11.74 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.60 6.35 -2.39 -0.02 1.58 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.18 7.84 -2.39 -0.02 1.16 16 34 H 0.03 1.15 5.66 -2.39 -0.01 1.14 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -67.65 294.43 2.45 -65.20 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.26 Total: 15.59 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 2.49 Total: -19.39 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.29 Total: -82.68 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.04 Total: -24.77 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.65 2.45 -65.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.660 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds