Wall clock time and date at job start Mon Mar 30 2020 03:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47175 * 180.27712 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.27722 * 3 2 1 6 6 H 1.48503 * 109.47370 * 60.27989 * 3 2 1 7 7 C 1.37880 * 120.00092 * 180.27682 * 2 1 3 8 8 H 1.07999 * 120.00348 * 190.65954 * 7 2 1 9 9 C 1.50698 * 120.00020 * 10.66207 * 7 2 1 10 10 C 1.53003 * 115.54807 * 35.53583 * 9 7 2 11 11 N 1.46905 * 109.47344 * 174.11831 * 10 9 7 12 12 C 1.47483 * 110.99855 * 260.06262 * 11 10 9 13 13 C 1.53506 * 87.92892 * 221.29320 * 12 11 10 14 14 O 1.42901 * 114.17206 * 272.37695 * 13 12 11 15 15 C 1.53000 * 114.34463 * 139.68104 * 13 12 11 16 16 C 1.53006 * 117.50096 * 154.82105 * 15 13 12 17 17 C 1.53009 * 117.50053 * 86.16222 * 15 13 12 18 18 C 1.47474 * 111.00047 * 164.08707 * 11 10 9 19 19 C 1.52994 * 117.49983 * 249.87202 * 9 7 2 20 20 C 1.53002 * 117.50377 * 181.20735 * 9 7 2 21 21 H 0.97004 * 119.99677 * 4.69930 * 1 2 3 22 22 H 1.08999 * 109.47203 * 294.11488 * 10 9 7 23 23 H 1.08995 * 109.47143 * 54.11340 * 10 9 7 24 24 H 1.09005 * 113.47311 * 336.05724 * 12 11 10 25 25 H 1.09000 * 113.47834 * 106.52272 * 12 11 10 26 26 H 0.96693 * 114.00198 * 37.79968 * 14 13 12 27 27 H 1.08997 * 115.55108 * 300.49115 * 15 13 12 28 28 H 1.08997 * 117.49737 * 359.97438 * 16 15 13 29 29 H 1.09000 * 117.49866 * 145.02149 * 16 15 13 30 30 H 1.08995 * 117.49803 * 214.98235 * 17 15 13 31 31 H 1.09004 * 117.49087 * 359.97438 * 17 15 13 32 32 H 1.09000 * 113.47918 * 253.46353 * 18 11 10 33 33 H 1.08994 * 113.47828 * 23.87512 * 18 11 10 34 34 H 1.09002 * 117.50077 * 359.97438 * 19 9 7 35 35 H 1.08996 * 117.50567 * 145.02187 * 19 9 7 36 36 H 1.08995 * 117.49905 * 214.98314 * 20 9 7 37 37 H 1.09001 * 117.49231 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0068 5 1 1.8853 2.3993 -1.2091 6 1 1.8955 2.3935 1.2159 7 6 2.0045 -1.1940 -0.0058 8 1 3.0706 -1.2030 0.1672 9 6 1.2706 -2.4867 -0.2535 10 6 0.1133 -2.4077 -1.2512 11 7 -0.4134 -3.7567 -1.4982 12 6 0.1105 -4.3052 -2.7630 13 6 -1.2951 -4.8556 -3.0418 14 8 -1.5357 -6.1522 -2.4914 15 6 -1.7465 -4.7240 -4.4978 16 6 -2.7993 -5.7126 -5.0031 17 6 -1.3456 -5.8395 -5.4653 18 6 -1.7405 -3.6968 -2.1386 19 6 1.1233 -3.4523 0.9241 20 6 2.0868 -3.7804 -0.2193 21 1 -0.4850 0.8373 -0.0688 22 1 -0.6770 -1.7785 -0.8419 23 1 0.4699 -1.9797 -2.1881 24 1 0.4252 -3.5388 -3.4713 25 1 0.8611 -5.0828 -2.6212 26 1 -1.1338 -6.2916 -1.6231 27 1 -1.7822 -3.7073 -4.8889 28 1 -3.1700 -6.4570 -4.2984 29 1 -3.5273 -5.3463 -5.7269 30 1 -1.1178 -5.5565 -6.4930 31 1 -0.7598 -6.6668 -5.0645 32 1 -2.5586 -3.9590 -1.4678 33 1 -1.9201 -2.7677 -2.6794 34 1 1.5576 -3.1528 1.8779 35 1 0.2023 -4.0317 0.9878 36 1 1.7991 -4.5753 -0.9074 37 1 3.1547 -3.6964 -0.0181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084376977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:42 Heat of formation + Delta-G solvation = 27.909734 kcal Electronic energy + Delta-G solvation = -17408.824250 eV Core-core repulsion = 14767.550638 eV Total energy + Delta-G solvation = -2641.273612 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.72365 -38.56116 -37.09836 -35.77888 -34.20706 -30.12393 -27.80091 -27.00534 -25.74980 -23.12041 -22.82414 -22.25204 -20.88114 -20.52859 -18.35529 -17.51796 -16.90399 -16.62405 -16.24134 -15.98048 -15.67320 -14.89709 -14.78262 -14.14934 -13.95253 -13.58427 -13.44068 -12.95444 -12.88298 -12.81439 -12.37364 -12.27531 -12.20841 -11.92214 -11.76167 -11.54472 -11.21369 -11.12138 -10.81077 -10.56348 -10.37617 -9.89129 -9.71071 -8.12100 -6.22631 1.38052 1.41580 1.52716 2.39927 2.76107 2.96683 3.14244 3.21686 3.57637 3.64277 3.72091 4.07731 4.27851 4.29362 4.36635 4.41974 4.48928 4.56687 4.66638 4.77395 4.78412 4.85699 4.93816 4.98415 5.04684 5.12109 5.17068 5.28823 5.31609 5.38298 5.56771 5.65931 5.76454 6.01618 6.12849 6.46120 6.74530 6.81572 7.39857 8.88545 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035822 B = 0.006312 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.458102 B = 4435.008431 C = 4782.231129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.514 4.514 8 H 0.049 0.951 9 C 0.023 3.977 10 C 0.084 3.916 11 N -0.479 5.479 12 C -0.024 4.024 13 C 0.159 3.841 14 O -0.540 6.540 15 C -0.154 4.154 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.027 4.027 19 C -0.188 4.188 20 C -0.184 4.184 21 H 0.262 0.738 22 H 0.086 0.914 23 H 0.012 0.988 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.393 0.607 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -8.815 -9.483 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.207 1.207 7 C -0.551 4.551 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.044 4.044 11 N -0.202 5.202 12 C -0.153 4.153 13 C 0.116 3.884 14 O -0.348 6.348 15 C -0.173 4.173 16 C -0.197 4.197 17 C -0.198 4.198 18 C -0.156 4.156 19 C -0.226 4.226 20 C -0.221 4.221 21 H 0.072 0.928 22 H 0.104 0.896 23 H 0.031 0.969 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.243 0.757 27 H 0.138 0.862 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.571 -9.083 -9.304 13.782 hybrid contribution 0.822 1.798 0.305 2.001 sum -3.748 -7.285 -8.999 12.169 Atomic orbital electron populations 1.70023 1.06950 1.27376 1.49819 1.25660 0.95631 1.02042 0.94115 0.85587 0.79065 0.79709 0.77794 1.19498 1.20039 1.20730 1.20949 0.93655 0.91543 1.48996 0.93241 1.19058 0.95026 0.88416 0.95273 1.21916 0.98330 0.88187 0.95945 1.68765 1.03592 1.21012 1.26800 1.24688 0.98450 1.00212 0.91957 1.21420 0.92897 0.82627 0.91424 1.86280 1.78235 1.30704 1.39539 1.22117 1.06997 0.96975 0.91174 1.22903 0.92285 1.01516 1.03037 1.22942 0.98170 0.99709 0.99027 1.24544 0.94622 0.99098 0.97335 1.22713 1.00059 1.06855 0.92955 1.22821 0.95209 1.01301 1.02736 0.92815 0.89589 0.96938 0.91306 0.89521 0.75657 0.86172 0.88993 0.87402 0.87238 0.89096 0.90040 0.91369 0.92674 0.90227 0.88923 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.49 10.77 21.45 0.23 -50.26 16 2 C 0.03 1.39 5.25 84.66 0.44 1.83 16 3 Si 0.95 42.95 29.55 68.60 2.03 44.98 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.51 -28.64 9.04 25.60 0.23 -28.41 16 8 H 0.05 2.78 7.84 -2.91 -0.02 2.75 16 9 C 0.02 1.17 2.36 -52.93 -0.13 1.04 16 10 C 0.08 3.95 4.22 86.30 0.36 4.32 16 11 N -0.48 -17.95 4.65 -928.17 -4.32 -22.27 16 12 C -0.02 -0.76 6.18 83.58 0.52 -0.24 16 13 C 0.16 4.40 1.81 -10.45 -0.02 4.38 16 14 O -0.54 -14.50 12.36 -148.98 -1.84 -16.34 16 15 C -0.15 -3.63 5.48 -10.79 -0.06 -3.69 16 16 C -0.16 -3.30 9.97 30.62 0.31 -2.99 16 17 C -0.16 -3.26 10.09 30.62 0.31 -2.95 16 18 C -0.03 -0.87 7.05 83.58 0.59 -0.28 16 19 C -0.19 -8.88 9.65 30.62 0.30 -8.58 16 20 C -0.18 -8.08 9.56 30.62 0.29 -7.78 16 21 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 22 H 0.09 4.56 5.87 -2.39 -0.01 4.54 16 23 H 0.01 0.61 7.21 -2.39 -0.02 0.59 16 24 H 0.07 2.26 7.34 -2.38 -0.02 2.25 16 25 H 0.09 2.64 7.19 -2.39 -0.02 2.63 16 26 H 0.39 9.53 8.82 -74.06 -0.65 8.88 16 27 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.09 2.09 7.49 -2.39 -0.02 2.07 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 2.28 7.87 -2.39 -0.02 2.26 16 34 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.08 3.60 7.79 -2.39 -0.02 3.59 16 36 H 0.09 3.67 5.76 -2.39 -0.01 3.65 16 37 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -58.69 297.84 -0.35 -59.04 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.40 Total: 28.21 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 3.15 Total: -43.36 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -4.09 Total: -72.53 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.84 Total: -16.34 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -58.69 -0.35 -59.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084376977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.953 kcal (2) G-P(sol) polarization free energy of solvation -58.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds