Wall clock time and date at job start Mon Mar 30 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.35307 * 2 1 4 4 C 1.54595 * 110.31017 * 122.14283 * 2 1 3 5 5 C 1.54937 * 102.92495 * 140.87571 * 4 2 1 6 6 N 1.48536 * 103.22297 * 322.58602 * 5 4 2 7 7 C 1.47899 * 105.82247 * 39.20439 * 6 5 4 8 8 H 1.09004 * 109.91158 * 94.22304 * 7 6 5 9 9 C 1.50700 * 109.92150 * 215.31311 * 7 6 5 10 10 O 1.21297 * 119.99421 * 18.27696 * 9 7 6 11 11 N 1.34772 * 120.00382 * 198.54800 * 9 7 6 12 12 C 1.37098 * 120.00298 * 179.73151 * 11 9 7 13 13 H 1.07996 * 119.99879 * 20.14907 * 12 11 9 14 14 C 1.38947 * 119.99932 * 200.16181 * 12 11 9 15 15 N 1.31410 * 120.00514 * 21.45478 * 14 12 11 16 16 Si 1.86801 * 119.99897 * 201.45993 * 14 12 11 17 17 H 1.48500 * 109.47206 * 89.99338 * 16 14 12 18 18 H 1.48495 * 109.47376 * 209.99803 * 16 14 12 19 19 H 1.48505 * 109.47070 * 329.99452 * 16 14 12 20 20 C 1.46503 * 120.00009 * 359.72582 * 11 9 7 21 21 C 1.47203 * 109.46788 * 84.00862 * 20 11 9 22 22 N 4.97003 * 104.83586 * 283.10606 * 2 1 3 23 23 H 1.09001 * 109.46861 * 182.14297 * 1 2 3 24 24 H 1.08997 * 109.46834 * 302.14150 * 1 2 3 25 25 H 1.08997 * 109.47004 * 62.13991 * 1 2 3 26 26 H 1.08997 * 110.72596 * 22.51204 * 4 2 1 27 27 H 1.09000 * 110.87775 * 259.30291 * 4 2 1 28 28 H 1.08999 * 110.66626 * 204.15403 * 5 4 2 29 29 H 1.08997 * 110.81114 * 81.08587 * 5 4 2 30 30 H 1.00907 * 110.99846 * 278.69193 * 6 5 4 31 31 H 0.96998 * 120.00058 * 180.02562 * 15 14 12 32 32 H 1.08994 * 109.47575 * 204.00863 * 20 11 9 33 33 H 1.09004 * 109.46783 * 324.01387 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0666 -0.7714 1.2276 5 6 3.2856 -1.5348 0.6515 6 7 2.8313 -1.9236 -0.7082 7 6 2.0645 -0.7684 -1.2228 8 1 2.7154 -0.1245 -1.8143 9 6 0.9145 -1.2512 -2.0687 10 8 0.5333 -2.3990 -1.9756 11 7 0.3131 -0.4093 -2.9323 12 6 -0.7295 -0.8501 -3.7058 13 1 -1.2811 -1.7324 -3.4166 14 6 -1.0764 -0.1618 -4.8619 15 7 -0.2001 0.6234 -5.4471 16 14 -2.7885 -0.3525 -5.5843 17 1 -3.6892 0.6736 -5.0004 18 1 -2.7267 -0.1764 -7.0574 19 1 -3.3107 -1.7066 -5.2692 20 6 0.7734 0.9770 -3.0446 21 6 1.9187 1.0404 -3.9672 22 7 2.8026 1.0894 -4.6792 23 1 -0.3633 -1.0270 0.0384 24 1 -0.3633 0.5467 0.8701 25 1 -0.3633 0.4802 -0.9085 26 1 1.3173 -1.4682 1.6030 27 1 2.3787 -0.0829 2.0129 28 1 3.5046 -2.4182 1.2512 29 1 4.1582 -0.8841 0.5942 30 1 2.2571 -2.7526 -0.6743 31 1 -0.4425 1.1041 -6.2540 32 1 -0.0359 1.5988 -3.4270 33 1 1.0775 1.3395 -2.0626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226892250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:33 Heat of formation + Delta-G solvation = 7.027443 kcal Electronic energy + Delta-G solvation = -17656.328309 eV Core-core repulsion = 14910.608830 eV Total energy + Delta-G solvation = -2745.719479 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.98784 -37.27845 -35.71785 -34.33155 -32.22052 -31.33298 -29.22801 -27.43466 -25.76604 -24.60785 -21.75462 -20.74104 -18.48059 -17.94170 -16.81686 -16.24467 -15.70693 -15.49239 -14.49510 -13.98012 -13.80094 -13.21902 -13.10010 -12.90762 -12.37782 -12.31532 -12.21782 -11.79753 -11.62623 -11.32640 -11.17581 -10.96299 -10.80998 -10.64347 -10.56990 -10.46748 -10.41723 -10.32821 -9.26887 -8.62707 -8.28342 -8.04778 -6.51716 -4.03141 3.08084 3.20976 3.24984 3.49529 3.77989 3.98401 4.10526 4.51101 4.71188 4.83121 4.89898 5.02978 5.18980 5.27683 5.50115 5.56842 5.67987 5.77199 5.87015 5.96994 6.01400 6.10436 6.21455 6.25591 6.40792 6.42932 6.66183 7.03260 7.45741 7.73919 7.89491 8.25112 8.75855 8.96492 9.16695 9.69446 10.54467 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.009019 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.058947 B = 3103.792245 C = 3486.099727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.150 4.150 5 C 0.041 3.959 6 N -0.659 5.659 7 C 0.057 3.943 8 H 0.092 0.908 9 C 0.466 3.534 10 O -0.571 6.571 11 N -0.439 5.439 12 C -0.316 4.316 13 H 0.108 0.892 14 C 0.033 3.967 15 N -0.874 5.874 16 Si 0.927 3.073 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.269 1.269 20 C 0.220 3.780 21 C 0.243 3.757 22 N -0.467 5.467 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.352 0.648 31 H 0.273 0.727 32 H 0.124 0.876 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.429 3.195 11.237 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.132 4.132 3 H 0.098 0.902 4 C -0.190 4.190 5 C -0.089 4.089 6 N -0.291 5.291 7 C -0.057 4.057 8 H 0.110 0.890 9 C 0.254 3.746 10 O -0.454 6.454 11 N -0.159 5.159 12 C -0.443 4.443 13 H 0.126 0.874 14 C -0.171 4.171 15 N -0.512 5.512 16 Si 0.753 3.247 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.193 1.193 20 C 0.093 3.907 21 C -0.076 4.076 22 N -0.147 5.147 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.149 2.897 9.659 10.311 hybrid contribution -1.933 0.067 0.093 1.937 sum 0.216 2.964 9.751 10.194 Atomic orbital electron populations 1.22104 0.93883 1.03006 1.02481 1.22345 0.97060 0.99603 0.94180 0.90190 1.23186 0.98627 0.99613 0.97526 1.23116 0.97199 0.99243 0.89294 1.62786 1.40349 1.05598 1.20340 1.22465 0.94124 0.93343 0.95741 0.89036 1.19981 0.84525 0.85735 0.84352 1.90512 1.65925 1.18254 1.70706 1.43572 1.30036 1.07071 1.35224 1.19691 1.06522 1.13900 1.04156 0.87444 1.25296 0.99355 0.97162 0.95299 1.69853 1.32617 1.29816 1.18922 0.85910 0.81901 0.79083 0.77792 1.20151 1.21100 1.19341 1.18758 0.91350 0.87300 0.93334 1.29226 0.92454 0.92794 0.93119 1.80892 1.15166 1.08230 1.10402 0.91891 0.92965 0.90681 0.91285 0.91112 0.90988 0.90513 0.82693 0.91591 0.85804 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 7.82 37.16 0.29 -2.07 16 2 C -0.11 -1.59 2.65 -89.26 -0.24 -1.83 16 3 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 4 C -0.15 -1.86 6.61 -24.87 -0.16 -2.02 16 5 C 0.04 0.54 7.55 -1.90 -0.01 0.53 16 6 N -0.66 -11.56 7.39 -104.34 -0.77 -12.33 16 7 C 0.06 1.04 2.92 -67.80 -0.20 0.84 16 8 H 0.09 1.72 6.51 -51.93 -0.34 1.39 16 9 C 0.47 10.42 4.73 -10.99 -0.05 10.37 16 10 O -0.57 -14.61 15.12 5.54 0.08 -14.53 16 11 N -0.44 -10.03 1.84 -117.93 -0.22 -10.25 16 12 C -0.32 -7.99 9.27 -14.93 -0.14 -8.13 16 13 H 0.11 2.88 7.43 -52.49 -0.39 2.49 16 14 C 0.03 0.81 4.84 -17.47 -0.08 0.72 16 15 N -0.87 -22.04 9.58 55.50 0.53 -21.51 16 16 Si 0.93 19.47 29.60 -169.99 -5.03 14.44 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 C 0.22 4.34 3.94 -6.83 -0.03 4.32 16 21 C 0.24 5.43 12.47 -20.76 -0.26 5.17 16 22 N -0.47 -11.31 18.54 42.15 0.78 -10.53 16 23 H 0.06 1.09 7.43 -51.93 -0.39 0.70 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.21 5.20 -51.93 -0.27 0.94 16 26 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.35 6.64 7.32 -39.29 -0.29 6.36 16 31 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.12 2.46 6.63 -51.93 -0.34 2.12 16 33 H 0.08 1.31 5.29 -51.93 -0.27 1.03 16 LS Contribution 268.66 15.07 4.05 4.05 Total: -1.00 -29.73 268.66 -5.39 -35.12 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.94 Total: 7.64 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -0.88 Total: 7.90 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.33 Total: -54.63 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.73 -5.39 -35.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226892250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.151 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds