Wall clock time and date at job start Mon Mar 30 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.35307 * 2 1 4 4 C 1.54595 * 110.31017 * 122.14283 * 2 1 3 5 5 C 1.54937 * 102.92495 * 140.87571 * 4 2 1 6 6 N 1.48536 * 103.22297 * 322.58602 * 5 4 2 7 7 C 1.47899 * 105.82247 * 39.20439 * 6 5 4 8 8 H 1.09004 * 109.91158 * 94.22304 * 7 6 5 9 9 C 1.50700 * 109.92150 * 215.31311 * 7 6 5 10 10 O 1.21297 * 119.99421 * 18.27696 * 9 7 6 11 11 N 1.34772 * 120.00382 * 198.54800 * 9 7 6 12 12 C 1.37098 * 120.00298 * 179.73151 * 11 9 7 13 13 H 1.07996 * 119.99879 * 20.14907 * 12 11 9 14 14 C 1.38947 * 119.99932 * 200.16181 * 12 11 9 15 15 N 1.31410 * 120.00514 * 21.45478 * 14 12 11 16 16 Si 1.86801 * 119.99897 * 201.45993 * 14 12 11 17 17 H 1.48500 * 109.47206 * 89.99338 * 16 14 12 18 18 H 1.48495 * 109.47376 * 209.99803 * 16 14 12 19 19 H 1.48505 * 109.47070 * 329.99452 * 16 14 12 20 20 C 1.46503 * 120.00009 * 359.72582 * 11 9 7 21 21 C 1.47203 * 109.46788 * 84.00862 * 20 11 9 22 22 N 4.97003 * 104.83586 * 283.10606 * 2 1 3 23 23 H 1.09001 * 109.46861 * 182.14297 * 1 2 3 24 24 H 1.08997 * 109.46834 * 302.14150 * 1 2 3 25 25 H 1.08997 * 109.47004 * 62.13991 * 1 2 3 26 26 H 1.08997 * 110.72596 * 22.51204 * 4 2 1 27 27 H 1.09000 * 110.87775 * 259.30291 * 4 2 1 28 28 H 1.08999 * 110.66626 * 204.15403 * 5 4 2 29 29 H 1.08997 * 110.81114 * 81.08587 * 5 4 2 30 30 H 1.00907 * 110.99846 * 278.69193 * 6 5 4 31 31 H 0.96998 * 120.00058 * 180.02562 * 15 14 12 32 32 H 1.08994 * 109.47575 * 204.00863 * 20 11 9 33 33 H 1.09004 * 109.46783 * 324.01387 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0666 -0.7714 1.2276 5 6 3.2856 -1.5348 0.6515 6 7 2.8313 -1.9236 -0.7082 7 6 2.0645 -0.7684 -1.2228 8 1 2.7154 -0.1245 -1.8143 9 6 0.9145 -1.2512 -2.0687 10 8 0.5333 -2.3990 -1.9756 11 7 0.3131 -0.4093 -2.9323 12 6 -0.7295 -0.8501 -3.7058 13 1 -1.2811 -1.7324 -3.4166 14 6 -1.0764 -0.1618 -4.8619 15 7 -0.2001 0.6234 -5.4471 16 14 -2.7885 -0.3525 -5.5843 17 1 -3.6892 0.6736 -5.0004 18 1 -2.7267 -0.1764 -7.0574 19 1 -3.3107 -1.7066 -5.2692 20 6 0.7734 0.9770 -3.0446 21 6 1.9187 1.0404 -3.9672 22 7 2.8026 1.0894 -4.6792 23 1 -0.3633 -1.0270 0.0384 24 1 -0.3633 0.5467 0.8701 25 1 -0.3633 0.4802 -0.9085 26 1 1.3173 -1.4682 1.6030 27 1 2.3787 -0.0829 2.0129 28 1 3.5046 -2.4182 1.2512 29 1 4.1582 -0.8841 0.5942 30 1 2.2571 -2.7526 -0.6743 31 1 -0.4425 1.1041 -6.2540 32 1 -0.0359 1.5988 -3.4270 33 1 1.0775 1.3395 -2.0626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226892250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:32 Heat of formation + Delta-G solvation = -13.865198 kcal Electronic energy + Delta-G solvation = -17657.234282 eV Core-core repulsion = 14910.608830 eV Total energy + Delta-G solvation = -2746.625452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52166 -38.73576 -37.52076 -36.17718 -33.94440 -32.69301 -30.53118 -29.13791 -27.22006 -26.18941 -23.06607 -22.02069 -20.02027 -19.74042 -18.42315 -17.90494 -17.12908 -16.91783 -16.18999 -15.63559 -15.20262 -14.79454 -14.48081 -14.38125 -13.93386 -13.83292 -13.57682 -13.36427 -13.25498 -13.10394 -12.89128 -12.35768 -12.21149 -12.12608 -12.10459 -11.95070 -11.74118 -11.56483 -11.09955 -10.39831 -9.91247 -9.56989 -8.40885 -5.98460 1.38889 1.47693 1.57793 1.77318 2.04111 2.22642 2.34702 2.97710 3.01636 3.35219 3.56077 3.71185 3.80931 3.93156 4.20699 4.47590 4.50283 4.53941 4.62011 4.78611 4.80738 4.87412 4.99716 5.09152 5.18533 5.31134 5.47415 5.48171 5.78340 6.06028 6.35194 6.38776 6.98359 7.10058 7.33072 7.88922 8.63230 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.009019 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.058947 B = 3103.792245 C = 3486.099727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 H 0.112 0.888 4 C -0.141 4.141 5 C 0.040 3.960 6 N -0.680 5.680 7 C 0.061 3.939 8 H 0.086 0.914 9 C 0.462 3.538 10 O -0.613 6.613 11 N -0.449 5.449 12 C -0.340 4.340 13 H 0.082 0.918 14 C 0.006 3.994 15 N -0.892 5.892 16 Si 0.986 3.014 17 H -0.257 1.257 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.224 3.776 21 C 0.254 3.746 22 N -0.503 5.503 23 H 0.030 0.970 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.341 0.659 31 H 0.274 0.726 32 H 0.125 0.875 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 4.677 12.919 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.129 4.129 3 H 0.130 0.870 4 C -0.180 4.180 5 C -0.089 4.089 6 N -0.311 5.311 7 C -0.053 4.053 8 H 0.104 0.896 9 C 0.252 3.748 10 O -0.498 6.498 11 N -0.168 5.168 12 C -0.467 4.467 13 H 0.100 0.900 14 C -0.197 4.197 15 N -0.530 5.530 16 Si 0.811 3.189 17 H -0.182 1.182 18 H -0.214 1.214 19 H -0.203 1.203 20 C 0.097 3.903 21 C -0.064 4.064 22 N -0.184 5.184 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.160 0.840 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.231 4.413 11.359 12.389 hybrid contribution -1.922 -0.462 -0.418 2.020 sum 0.309 3.951 10.941 11.637 Atomic orbital electron populations 1.22040 0.94500 1.01271 1.03203 1.22435 0.96421 1.00960 0.93045 0.86977 1.23145 0.97756 0.99749 0.97313 1.23286 0.97889 1.00471 0.87260 1.62817 1.39885 1.05031 1.23415 1.22460 0.92230 0.93942 0.96662 0.89568 1.20787 0.84860 0.85133 0.84009 1.90476 1.67335 1.20155 1.71832 1.43693 1.29782 1.08399 1.34942 1.19580 1.07847 1.13974 1.05311 0.90035 1.25913 1.02092 0.96573 0.95088 1.69932 1.33720 1.30270 1.19122 0.85026 0.78296 0.78868 0.76716 1.18162 1.21388 1.20309 1.19046 0.90460 0.85744 0.95064 1.29749 0.92296 0.91708 0.92652 1.80887 1.16545 1.09366 1.11591 0.95057 0.89764 0.92159 0.91936 0.87638 0.89338 0.89115 0.83989 0.91564 0.85777 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 7.82 71.98 0.56 -3.71 16 2 C -0.11 -2.76 2.65 -9.92 -0.03 -2.79 16 3 H 0.11 2.20 7.95 -2.39 -0.02 2.19 16 4 C -0.14 -2.96 6.61 31.80 0.21 -2.75 16 5 C 0.04 0.93 7.55 86.65 0.65 1.59 16 6 N -0.68 -23.26 7.39 -484.03 -3.58 -26.84 16 7 C 0.06 2.14 2.92 44.31 0.13 2.27 16 8 H 0.09 3.12 6.51 -2.38 -0.02 3.10 16 9 C 0.46 20.89 4.73 87.66 0.41 21.31 16 10 O -0.61 -32.45 15.12 -3.08 -0.05 -32.50 16 11 N -0.45 -20.62 1.84 -645.41 -1.19 -21.81 16 12 C -0.34 -17.55 9.27 84.04 0.78 -16.77 16 13 H 0.08 4.56 7.43 -2.91 -0.02 4.54 16 14 C 0.01 0.28 4.84 84.93 0.41 0.69 16 15 N -0.89 -44.84 9.58 21.66 0.21 -44.63 16 16 Si 0.99 39.93 29.60 68.60 2.03 41.96 16 17 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 18 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 20 C 0.22 8.58 3.94 84.57 0.33 8.91 16 21 C 0.25 11.21 12.47 89.44 1.12 12.32 16 22 N -0.50 -24.26 18.54 20.01 0.37 -23.89 16 23 H 0.03 1.06 7.43 -2.39 -0.02 1.04 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.85 5.20 -2.39 -0.01 1.84 16 26 H 0.06 1.42 7.84 -2.39 -0.02 1.40 16 27 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.34 12.99 7.32 -89.69 -0.66 12.33 16 31 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 32 H 0.12 4.80 6.63 -2.39 -0.02 4.79 16 33 H 0.13 3.72 5.29 -2.38 -0.01 3.70 16 Total: -1.00 -65.87 268.66 2.87 -63.00 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.48 Total: 23.63 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 4.58 Total: 21.07 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -4.19 Total: -117.17 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.05 Total: -32.50 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -65.87 2.87 -63.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226892250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.140 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds