Wall clock time and date at job start Mon Mar 30 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38355 * 119.99924 * 2 1 4 4 C 1.41186 * 120.29950 * 359.97438 * 3 2 1 5 5 N 1.30336 * 120.39081 * 179.74953 * 4 3 2 6 6 N 1.39876 * 121.01609 * 0.53266 * 5 4 3 7 7 C 1.46496 * 119.72119 * 179.73934 * 6 5 4 8 8 C 1.52997 * 109.47294 * 269.72767 * 7 6 5 9 9 C 1.53006 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.46866 * 90.00390 * 14 12 10 16 16 H 1.48502 * 109.47245 * 210.00175 * 14 12 10 17 17 H 1.48494 * 109.47271 * 330.00312 * 14 12 10 18 18 C 1.34760 * 120.55619 * 359.47038 * 6 5 4 19 19 O 1.22148 * 120.19681 * 180.27726 * 18 6 5 20 20 C 1.38253 * 120.30192 * 180.02562 * 3 2 1 21 21 H 1.08992 * 109.47341 * 59.99790 * 1 2 3 22 22 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46787 * 299.99462 * 1 2 3 24 24 H 0.96994 * 119.99938 * 180.02562 * 2 1 3 25 25 H 1.08001 * 119.80784 * 0.04508 * 4 3 2 26 26 H 1.09001 * 109.47054 * 149.72499 * 7 6 5 27 27 H 1.09004 * 109.47074 * 29.73013 * 7 6 5 28 28 H 1.09001 * 109.46832 * 60.00150 * 8 7 6 29 29 H 1.08993 * 109.47194 * 299.99671 * 8 7 6 30 30 H 1.09001 * 109.46801 * 300.00272 * 9 8 7 31 31 H 1.09001 * 109.46998 * 59.99868 * 9 8 7 32 32 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 33 33 H 1.07996 * 120.48115 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1568 1.1982 0.0000 4 6 1.4573 2.4246 -0.0005 5 7 2.1071 3.5543 0.0044 6 7 3.5056 3.5814 -0.0009 7 6 4.2071 4.8675 -0.0009 8 6 4.4519 5.3149 -1.4434 9 6 5.1840 6.6584 -1.4434 10 6 5.4257 7.0988 -2.8642 11 1 5.0903 6.4823 -3.6851 12 6 6.0741 8.2892 -3.1161 13 7 6.4821 9.0402 -2.1165 14 14 6.3730 8.8354 -4.8773 15 1 5.2226 9.6498 -5.3450 16 1 7.6135 9.6495 -4.9393 17 1 6.5206 7.6414 -5.7476 18 6 4.2131 2.4345 -0.0004 19 8 5.4341 2.4658 0.0001 20 6 3.5393 1.2055 -0.0005 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.9500 -0.8400 -0.0004 25 1 0.3773 2.4266 -0.0002 26 1 5.1622 4.7604 0.5134 27 1 3.5996 5.6128 0.5126 28 1 3.4968 5.4220 -1.9576 29 1 5.0594 4.5697 -1.9568 30 1 4.5761 7.4034 -0.9300 31 1 6.1391 6.5518 -0.9290 32 1 6.9386 9.8775 -2.2938 33 1 4.0920 0.2777 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232374836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:57 Heat of formation + Delta-G solvation = 19.708385 kcal Electronic energy + Delta-G solvation = -16150.823482 eV Core-core repulsion = 13405.653889 eV Total energy + Delta-G solvation = -2745.169592 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.74514 -37.89975 -36.25478 -34.56354 -32.74549 -31.11733 -30.73787 -27.26830 -26.19611 -24.72691 -23.12396 -21.95071 -20.24732 -18.30415 -17.51391 -17.23780 -16.11495 -15.55950 -15.46658 -14.97411 -14.51680 -14.35956 -13.90737 -13.47772 -13.12887 -12.72780 -12.59143 -12.39150 -12.07680 -11.44388 -11.22402 -10.99714 -10.74986 -10.63878 -10.53090 -9.69545 -9.64743 -9.35679 -9.10942 -8.48242 -8.29089 -8.06380 -5.94334 -3.96142 0.67049 1.97001 2.40396 2.91847 3.36670 3.42430 3.46982 3.69430 4.27133 4.50462 4.53705 4.63311 4.86712 4.95341 5.20908 5.41556 5.55698 5.62204 5.80947 5.91010 6.09459 6.15896 6.23436 6.66100 6.68333 6.93380 7.07017 7.12510 7.71792 7.83842 7.90896 8.05070 8.32151 8.48315 9.09812 9.67256 11.17181 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.004470 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.043872 B = 6262.940090 C = 6427.298484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.728 5.728 3 C 0.230 3.770 4 C 0.034 3.966 5 N -0.181 5.181 6 N -0.410 5.410 7 C 0.122 3.878 8 C -0.120 4.120 9 C 0.025 3.975 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.517 3.483 19 O -0.548 6.548 20 C -0.303 4.303 21 H 0.061 0.939 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.408 0.592 25 H 0.186 0.814 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.260 0.740 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.919 -18.083 6.073 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.356 5.356 3 C 0.117 3.883 4 C -0.167 4.167 5 N 0.004 4.996 6 N -0.232 5.232 7 C 0.002 3.998 8 C -0.159 4.159 9 C -0.013 4.013 10 C -0.556 4.556 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.315 3.685 19 O -0.427 6.427 20 C -0.341 4.341 21 H 0.080 0.920 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.243 0.757 25 H 0.203 0.797 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.401 -16.845 6.127 22.994 hybrid contribution 0.427 -0.906 -1.002 1.417 sum -13.975 -17.751 5.125 23.166 Atomic orbital electron populations 1.21765 0.79329 1.03411 1.01934 1.44323 1.06391 1.05493 1.79372 1.18879 0.91795 0.87182 0.90461 1.23630 1.00986 0.87022 1.05108 1.75004 0.92782 1.25236 1.06553 1.50051 1.00649 1.09714 1.62770 1.22095 0.96428 0.80166 1.01121 1.21993 1.00841 1.00634 0.92405 1.19043 0.95291 0.89504 0.97431 1.21206 1.37035 1.04993 0.92376 0.92746 1.25012 0.95711 0.96664 0.97064 1.69965 1.39775 1.13174 1.30593 0.86580 0.77613 0.78624 0.85110 1.20686 1.21205 1.19905 1.16983 0.88324 0.84020 0.79131 1.90997 1.12229 1.86497 1.52947 1.21845 0.91796 0.99193 1.21222 0.91996 0.90156 0.92066 0.75694 0.79742 0.88493 0.89370 0.92874 0.92761 0.96256 0.96153 0.93014 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.26 9.94 59.85 0.59 0.86 16 2 N -0.73 -4.57 5.84 -65.29 -0.38 -4.95 16 3 C 0.23 2.39 6.67 -83.79 -0.56 1.83 16 4 C 0.03 0.36 10.59 -17.07 -0.18 0.18 16 5 N -0.18 -2.68 11.53 30.82 0.36 -2.32 16 6 N -0.41 -7.33 3.50 -63.59 -0.22 -7.56 16 7 C 0.12 2.37 5.69 -4.05 -0.02 2.35 16 8 C -0.12 -2.73 5.48 -26.73 -0.15 -2.87 16 9 C 0.02 0.67 4.97 -27.88 -0.14 0.54 16 10 C -0.52 -15.32 9.11 -34.44 -0.31 -15.63 16 11 H 0.05 1.58 7.74 -52.48 -0.41 1.17 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 14 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 C 0.52 9.57 7.47 -15.55 -0.12 9.46 16 19 O -0.55 -12.29 16.68 4.78 0.08 -12.21 16 20 C -0.30 -4.20 9.89 -38.86 -0.38 -4.58 16 21 H 0.06 0.19 7.95 -51.93 -0.41 -0.22 16 22 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 23 H 0.06 0.17 7.95 -51.93 -0.41 -0.24 16 24 H 0.41 1.96 8.83 -40.82 -0.36 1.60 16 25 H 0.19 1.17 6.77 -52.49 -0.36 0.81 16 26 H 0.10 1.96 7.40 -51.93 -0.38 1.58 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 288.83 15.07 4.35 4.35 Total: -1.00 -36.11 288.83 -5.89 -42.01 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.43 Total: -3.48 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.36 Total: -6.31 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.49 Total: -41.69 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -36.11 -5.89 -42.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232374836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.713 kcal (2) G-P(sol) polarization free energy of solvation -36.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds