Wall clock time and date at job start Mon Mar 30 2020 03:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38355 * 119.99924 * 2 1 4 4 C 1.41186 * 120.29950 * 359.97438 * 3 2 1 5 5 N 1.30336 * 120.39081 * 179.74953 * 4 3 2 6 6 N 1.39876 * 121.01609 * 0.53266 * 5 4 3 7 7 C 1.46496 * 119.72119 * 179.73934 * 6 5 4 8 8 C 1.52997 * 109.47294 * 269.72767 * 7 6 5 9 9 C 1.53006 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.46866 * 90.00390 * 14 12 10 16 16 H 1.48502 * 109.47245 * 210.00175 * 14 12 10 17 17 H 1.48494 * 109.47271 * 330.00312 * 14 12 10 18 18 C 1.34760 * 120.55619 * 359.47038 * 6 5 4 19 19 O 1.22148 * 120.19681 * 180.27726 * 18 6 5 20 20 C 1.38253 * 120.30192 * 180.02562 * 3 2 1 21 21 H 1.08992 * 109.47341 * 59.99790 * 1 2 3 22 22 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46787 * 299.99462 * 1 2 3 24 24 H 0.96994 * 119.99938 * 180.02562 * 2 1 3 25 25 H 1.08001 * 119.80784 * 0.04508 * 4 3 2 26 26 H 1.09001 * 109.47054 * 149.72499 * 7 6 5 27 27 H 1.09004 * 109.47074 * 29.73013 * 7 6 5 28 28 H 1.09001 * 109.46832 * 60.00150 * 8 7 6 29 29 H 1.08993 * 109.47194 * 299.99671 * 8 7 6 30 30 H 1.09001 * 109.46801 * 300.00272 * 9 8 7 31 31 H 1.09001 * 109.46998 * 59.99868 * 9 8 7 32 32 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 33 33 H 1.07996 * 120.48115 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1568 1.1982 0.0000 4 6 1.4573 2.4246 -0.0005 5 7 2.1071 3.5543 0.0044 6 7 3.5056 3.5814 -0.0009 7 6 4.2071 4.8675 -0.0009 8 6 4.4519 5.3149 -1.4434 9 6 5.1840 6.6584 -1.4434 10 6 5.4257 7.0988 -2.8642 11 1 5.0903 6.4823 -3.6851 12 6 6.0741 8.2892 -3.1161 13 7 6.4821 9.0402 -2.1165 14 14 6.3730 8.8354 -4.8773 15 1 5.2226 9.6498 -5.3450 16 1 7.6135 9.6495 -4.9393 17 1 6.5206 7.6414 -5.7476 18 6 4.2131 2.4345 -0.0004 19 8 5.4341 2.4658 0.0001 20 6 3.5393 1.2055 -0.0005 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.9500 -0.8400 -0.0004 25 1 0.3773 2.4266 -0.0002 26 1 5.1622 4.7604 0.5134 27 1 3.5996 5.6128 0.5126 28 1 3.4968 5.4220 -1.9576 29 1 5.0594 4.5697 -1.9568 30 1 4.5761 7.4034 -0.9300 31 1 6.1391 6.5518 -0.9290 32 1 6.9386 9.8775 -2.2938 33 1 4.0920 0.2777 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232374836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:56 Heat of formation + Delta-G solvation = -7.755794 kcal Electronic energy + Delta-G solvation = -16152.014418 eV Core-core repulsion = 13405.653889 eV Total energy + Delta-G solvation = -2746.360529 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.91299 -38.95396 -37.46772 -36.24995 -34.55790 -32.45043 -32.09589 -28.85704 -27.07148 -26.01447 -24.75236 -23.13251 -22.16230 -19.34403 -18.84683 -18.29046 -18.01892 -16.82427 -16.52095 -16.45145 -15.96542 -15.64343 -15.07690 -14.75718 -14.38374 -14.10497 -14.01623 -13.60660 -13.29188 -13.00558 -12.85335 -12.69830 -12.53478 -12.12742 -11.92433 -11.64614 -11.52988 -11.28364 -10.85299 -10.56948 -9.84436 -8.90610 -8.21419 -6.33071 -0.34646 0.91938 1.17013 1.38570 1.41190 1.52410 2.26301 2.40344 2.51962 3.11199 3.35418 3.46205 3.96503 4.12091 4.20710 4.41379 4.46080 4.60959 4.66804 4.74909 4.78798 4.94583 5.04938 5.07982 5.14320 5.20185 5.45629 5.66103 5.79749 5.94291 6.21394 6.46587 6.72865 6.81015 7.05223 7.35523 8.90633 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.004470 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.043872 B = 6262.940090 C = 6427.298484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.701 5.701 3 C 0.262 3.738 4 C 0.065 3.935 5 N -0.212 5.212 6 N -0.429 5.429 7 C 0.135 3.865 8 C -0.100 4.100 9 C 0.030 3.970 10 C -0.547 4.547 11 H 0.055 0.945 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.969 3.031 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.268 1.268 18 C 0.502 3.498 19 O -0.613 6.613 20 C -0.343 4.343 21 H 0.074 0.926 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.419 0.581 25 H 0.240 0.760 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.008 0.992 31 H -0.008 1.008 32 H 0.266 0.734 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.298 -19.732 5.275 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.326 5.326 3 C 0.143 3.857 4 C -0.137 4.137 5 N -0.025 5.025 6 N -0.248 5.248 7 C 0.014 3.986 8 C -0.138 4.138 9 C -0.008 4.008 10 C -0.585 4.585 11 H 0.073 0.927 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.793 3.207 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.192 1.192 18 C 0.304 3.696 19 O -0.497 6.497 20 C -0.380 4.380 21 H 0.092 0.908 22 H 0.125 0.875 23 H 0.096 0.904 24 H 0.256 0.744 25 H 0.255 0.745 26 H 0.095 0.905 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.010 0.990 32 H 0.074 0.926 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.857 -18.553 5.337 26.298 hybrid contribution 1.172 -0.607 -0.703 1.495 sum -16.685 -19.160 4.635 25.826 Atomic orbital electron populations 1.22196 0.76518 1.05856 1.03259 1.44654 1.08137 1.04507 1.75313 1.18811 0.90681 0.88738 0.87444 1.24603 1.02960 0.85895 1.00239 1.75060 0.90681 1.27316 1.09440 1.49764 1.02189 1.08417 1.64430 1.21627 0.96535 0.81973 0.98495 1.21669 0.99782 0.97618 0.94755 1.18908 0.94184 0.91503 0.96178 1.21603 1.37836 1.05695 0.93361 0.92722 1.25988 0.95037 0.96538 1.02129 1.70092 1.40150 1.13654 1.33154 0.85400 0.78022 0.78342 0.78986 1.19162 1.20419 1.19243 1.17650 0.87900 0.85407 0.78615 1.90933 1.14808 1.87329 1.56631 1.21613 0.93407 0.97437 1.25553 0.90754 0.87514 0.90443 0.74449 0.74453 0.90458 0.87868 0.92332 0.94985 0.97395 0.98990 0.92570 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 9.94 127.77 1.27 1.30 16 2 N -0.70 -5.44 5.84 -360.49 -2.10 -7.54 16 3 C 0.26 4.61 6.67 38.84 0.26 4.86 16 4 C 0.06 1.13 10.59 85.64 0.91 2.04 16 5 N -0.21 -5.95 11.53 -56.40 -0.65 -6.60 16 6 N -0.43 -15.78 3.50 -473.15 -1.66 -17.43 16 7 C 0.13 5.58 5.69 86.38 0.49 6.07 16 8 C -0.10 -4.77 5.48 30.60 0.17 -4.60 16 9 C 0.03 1.71 4.97 29.85 0.15 1.86 16 10 C -0.55 -33.32 9.11 25.60 0.23 -33.09 16 11 H 0.05 3.24 7.74 -2.91 -0.02 3.22 16 12 C 0.00 0.06 5.46 84.65 0.46 0.53 16 13 N -0.93 -58.59 13.29 21.45 0.28 -58.31 16 14 Si 0.97 46.18 29.54 68.60 2.03 48.21 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 C 0.50 19.52 7.47 84.71 0.63 20.16 16 19 O -0.61 -29.80 16.68 -5.80 -0.10 -29.90 16 20 C -0.34 -9.39 9.89 22.74 0.22 -9.17 16 21 H 0.07 -0.03 7.95 -2.39 -0.02 -0.05 16 22 H 0.11 -0.37 8.14 -2.38 -0.02 -0.39 16 23 H 0.08 -0.09 7.95 -2.39 -0.02 -0.11 16 24 H 0.42 2.18 8.83 -92.71 -0.82 1.36 16 25 H 0.24 1.45 6.77 -2.91 -0.02 1.43 16 26 H 0.08 3.44 7.40 -2.39 -0.02 3.42 16 27 H 0.10 3.84 8.14 -2.38 -0.02 3.82 16 28 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -84.25 288.83 2.89 -81.36 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: 0.29 Total: 0.26 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.80 Total: -10.05 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -4.13 Total: -89.88 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.10 Total: -29.90 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -84.25 2.89 -81.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232374836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.603 kcal (2) G-P(sol) polarization free energy of solvation -84.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds