Wall clock time and date at job start Mon Mar 30 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99915 * 2 1 4 4 C 1.53004 * 109.46920 * 269.99957 * 3 2 1 5 5 C 1.50700 * 109.46627 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00490 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99621 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 59.99796 * 9 7 5 11 11 H 1.48493 * 109.47413 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47140 * 300.00117 * 9 7 5 13 13 C 1.34777 * 120.00122 * 180.02562 * 2 1 3 14 14 O 1.21604 * 120.00347 * 182.13244 * 13 2 1 15 15 C 1.47432 * 119.99919 * 2.13253 * 13 2 1 16 16 C 1.41300 * 126.41508 * 354.11420 * 15 13 2 17 17 N 1.30442 * 108.02173 * 180.28414 * 16 15 13 18 18 N 1.39932 * 108.89737 * 359.74983 * 17 16 15 19 19 C 1.46507 * 125.75513 * 179.97438 * 18 17 16 20 20 C 1.34258 * 108.49632 * 359.97438 * 18 17 16 21 21 H 1.09003 * 109.47027 * 238.78989 * 1 2 3 22 22 H 1.09001 * 109.47329 * 358.79233 * 1 2 3 23 23 H 1.09004 * 109.47077 * 118.79430 * 1 2 3 24 24 H 1.08993 * 109.47039 * 30.00105 * 3 2 1 25 25 H 1.09002 * 109.46662 * 149.99856 * 3 2 1 26 26 H 1.08994 * 109.46865 * 299.99982 * 4 3 2 27 27 H 1.08998 * 109.47116 * 60.00202 * 4 3 2 28 28 H 0.96997 * 119.99592 * 180.02562 * 8 7 5 29 29 H 1.07993 * 125.98757 * 0.03722 * 16 15 13 30 30 H 1.08991 * 109.47408 * 270.00418 * 19 18 17 31 31 H 1.09001 * 109.46758 * 30.00019 * 19 18 17 32 32 H 1.09004 * 109.47573 * 149.99630 * 19 18 17 33 33 H 1.07998 * 126.29654 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2065 3.0152 -1.4425 6 1 3.4764 3.4829 -0.5072 7 6 3.5508 3.6124 -2.6366 8 7 3.2216 3.0431 -3.7755 9 14 4.4848 5.2301 -2.6366 10 1 5.7826 5.0524 -1.9369 11 1 4.7325 5.6588 -4.0365 12 1 3.6825 6.2650 -1.9360 13 6 2.1389 -1.1672 -0.0005 14 8 3.3543 -1.1676 0.0387 15 6 1.4025 -2.4435 -0.0486 16 6 0.0005 -2.6062 0.0198 17 7 -0.2615 -3.8821 -0.0491 18 7 0.9418 -4.5861 -0.1689 19 6 1.0756 -6.0414 -0.2732 20 6 1.9533 -3.7033 -0.1722 21 1 -0.3633 -0.5325 0.8790 22 1 -0.3634 1.0274 0.0217 23 1 -0.3633 -0.4950 -0.9006 24 1 1.6084 2.0283 0.5138 25 1 3.1499 1.1383 0.5139 26 1 3.0415 0.9507 -1.9563 27 1 1.5000 1.8407 -1.9564 28 1 3.4642 3.4632 -4.6155 29 1 -0.7263 -1.8133 0.1165 30 1 1.1710 -6.4699 0.7244 31 1 0.1929 -6.4531 -0.7626 32 1 1.9622 -6.2838 -0.8592 33 1 3.0049 -3.9361 -0.2513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259334564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:24 Heat of formation + Delta-G solvation = 55.625178 kcal Electronic energy + Delta-G solvation = -16403.613485 eV Core-core repulsion = 13660.001362 eV Total energy + Delta-G solvation = -2743.612123 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.34071 -38.80897 -35.30995 -33.66230 -32.87057 -30.56078 -29.78439 -27.27374 -26.58562 -24.76441 -22.27646 -21.22488 -20.59385 -19.04044 -17.11240 -16.42799 -15.95364 -15.71259 -15.14463 -14.76791 -14.36150 -14.27058 -13.32253 -13.10537 -12.89965 -12.77792 -12.53416 -12.47402 -12.20563 -11.37767 -11.23360 -11.00457 -10.85604 -10.66190 -9.83738 -9.79935 -9.58686 -9.38079 -9.05387 -8.62837 -8.30110 -7.87877 -5.95546 -3.98455 1.62454 2.30690 2.32729 3.37355 3.41288 3.43590 3.61045 3.88379 4.39353 4.51423 4.78713 4.87837 4.96174 5.13334 5.14238 5.40449 5.42223 5.49107 5.62034 5.70294 5.91861 6.22287 6.44096 6.63037 6.77984 6.94310 7.06459 7.53244 7.69509 7.79957 8.06350 8.08054 8.42702 8.81349 9.08607 9.64969 11.15947 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048698 B = 0.004831 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.831445 B = 5795.069853 C = 5940.211850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.119 3.881 4 C 0.012 3.988 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.587 3.413 14 O -0.548 6.548 15 C -0.281 4.281 16 C 0.059 3.941 17 N -0.307 5.307 18 N -0.370 5.370 19 C 0.099 3.901 20 C 0.121 3.879 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.016 0.984 28 H 0.261 0.739 29 H 0.209 0.791 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -14.985 7.605 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.338 5.338 3 C -0.002 4.002 4 C -0.025 4.025 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.376 3.624 14 O -0.427 6.427 15 C -0.296 4.296 16 C -0.127 4.127 17 N -0.127 5.127 18 N -0.150 5.150 19 C -0.042 4.042 20 C -0.030 4.030 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.225 0.775 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.650 -15.999 7.422 19.225 hybrid contribution 1.066 1.447 -0.235 1.812 sum -6.584 -14.553 7.188 17.515 Atomic orbital electron populations 1.22181 0.81162 1.03387 1.00343 1.47796 1.06335 1.06862 1.72841 1.21900 0.95758 0.81067 1.01442 1.19393 0.97015 0.96256 0.89883 1.21083 1.36250 1.06156 0.92432 0.92554 1.24996 0.95994 0.97698 0.95588 1.69969 1.46834 1.39253 0.97266 0.86627 0.80488 0.83794 0.76903 1.20173 1.21331 1.20224 1.17193 0.86436 0.82437 0.76369 1.90757 1.13359 1.87296 1.51309 1.20441 0.93568 0.94111 1.21455 1.25263 0.95894 0.94374 0.97204 1.77150 1.04583 1.05836 1.25141 1.48398 1.04307 1.07160 1.55108 1.21933 1.04386 0.74497 1.03415 1.22953 0.95080 0.88675 0.96289 0.92177 0.90219 0.91953 0.91798 0.90854 0.96045 0.96592 0.92973 0.77491 0.90478 0.89063 0.89162 0.79588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.56 59.85 0.51 1.49 16 2 N -0.61 -11.38 2.87 -182.85 -0.53 -11.90 16 3 C 0.12 2.60 5.34 -4.04 -0.02 2.57 16 4 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 5 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.59 11.58 7.67 -12.52 -0.10 11.48 16 14 O -0.55 -12.85 16.47 5.27 0.09 -12.77 16 15 C -0.28 -4.47 6.04 -105.06 -0.63 -5.11 16 16 C 0.06 0.81 9.92 -16.98 -0.17 0.64 16 17 N -0.31 -4.21 12.50 30.86 0.39 -3.82 16 18 N -0.37 -4.39 3.98 -67.60 -0.27 -4.66 16 19 C 0.10 0.65 11.44 59.85 0.68 1.34 16 20 C 0.12 1.62 11.30 -16.56 -0.19 1.44 16 21 H 0.06 0.64 6.23 -51.93 -0.32 0.32 16 22 H 0.08 1.01 7.79 -51.93 -0.40 0.61 16 23 H 0.06 0.79 6.72 -51.93 -0.35 0.44 16 24 H 0.06 1.25 7.91 -51.93 -0.41 0.84 16 25 H 0.07 1.71 7.39 -51.93 -0.38 1.32 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.21 2.25 4.16 -52.49 -0.22 2.03 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.19 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 285.11 15.07 4.30 4.30 Total: -1.00 -36.60 285.11 -4.95 -41.55 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.17 Total: -3.20 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -0.47 Total: 0.30 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.33 Total: -47.17 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -36.60 -4.95 -41.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259334564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.173 kcal (2) G-P(sol) polarization free energy of solvation -36.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds