Wall clock time and date at job start Mon Mar 30 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99915 * 2 1 4 4 C 1.53004 * 109.46920 * 269.99957 * 3 2 1 5 5 C 1.50700 * 109.46627 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00490 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99621 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 59.99796 * 9 7 5 11 11 H 1.48493 * 109.47413 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47140 * 300.00117 * 9 7 5 13 13 C 1.34777 * 120.00122 * 180.02562 * 2 1 3 14 14 O 1.21604 * 120.00347 * 182.13244 * 13 2 1 15 15 C 1.47432 * 119.99919 * 2.13253 * 13 2 1 16 16 C 1.41300 * 126.41508 * 354.11420 * 15 13 2 17 17 N 1.30442 * 108.02173 * 180.28414 * 16 15 13 18 18 N 1.39932 * 108.89737 * 359.74983 * 17 16 15 19 19 C 1.46507 * 125.75513 * 179.97438 * 18 17 16 20 20 C 1.34258 * 108.49632 * 359.97438 * 18 17 16 21 21 H 1.09003 * 109.47027 * 238.78989 * 1 2 3 22 22 H 1.09001 * 109.47329 * 358.79233 * 1 2 3 23 23 H 1.09004 * 109.47077 * 118.79430 * 1 2 3 24 24 H 1.08993 * 109.47039 * 30.00105 * 3 2 1 25 25 H 1.09002 * 109.46662 * 149.99856 * 3 2 1 26 26 H 1.08994 * 109.46865 * 299.99982 * 4 3 2 27 27 H 1.08998 * 109.47116 * 60.00202 * 4 3 2 28 28 H 0.96997 * 119.99592 * 180.02562 * 8 7 5 29 29 H 1.07993 * 125.98757 * 0.03722 * 16 15 13 30 30 H 1.08991 * 109.47408 * 270.00418 * 19 18 17 31 31 H 1.09001 * 109.46758 * 30.00019 * 19 18 17 32 32 H 1.09004 * 109.47573 * 149.99630 * 19 18 17 33 33 H 1.07998 * 126.29654 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2065 3.0152 -1.4425 6 1 3.4764 3.4829 -0.5072 7 6 3.5508 3.6124 -2.6366 8 7 3.2216 3.0431 -3.7755 9 14 4.4848 5.2301 -2.6366 10 1 5.7826 5.0524 -1.9369 11 1 4.7325 5.6588 -4.0365 12 1 3.6825 6.2650 -1.9360 13 6 2.1389 -1.1672 -0.0005 14 8 3.3543 -1.1676 0.0387 15 6 1.4025 -2.4435 -0.0486 16 6 0.0005 -2.6062 0.0198 17 7 -0.2615 -3.8821 -0.0491 18 7 0.9418 -4.5861 -0.1689 19 6 1.0756 -6.0414 -0.2732 20 6 1.9533 -3.7033 -0.1722 21 1 -0.3633 -0.5325 0.8790 22 1 -0.3634 1.0274 0.0217 23 1 -0.3633 -0.4950 -0.9006 24 1 1.6084 2.0283 0.5138 25 1 3.1499 1.1383 0.5139 26 1 3.0415 0.9507 -1.9563 27 1 1.5000 1.8407 -1.9564 28 1 3.4642 3.4632 -4.6155 29 1 -0.7263 -1.8133 0.1165 30 1 1.1710 -6.4699 0.7244 31 1 0.1929 -6.4531 -0.7626 32 1 1.9622 -6.2838 -0.8592 33 1 3.0049 -3.9361 -0.2513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259334564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:23 Heat of formation + Delta-G solvation = 29.383640 kcal Electronic energy + Delta-G solvation = -16404.751404 eV Core-core repulsion = 13660.001362 eV Total energy + Delta-G solvation = -2744.750042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.40472 -40.28296 -36.91999 -35.28222 -34.30441 -32.19188 -31.12331 -28.50504 -27.71872 -26.55599 -23.88473 -22.46653 -21.92730 -20.40231 -18.61611 -18.28046 -17.13248 -16.80840 -16.68136 -16.47640 -15.82338 -15.41517 -14.78010 -14.50836 -14.21772 -14.01234 -13.89723 -13.53679 -13.51042 -13.28284 -12.80660 -12.61913 -12.43542 -12.07932 -11.83316 -11.76136 -11.40174 -10.77676 -10.56262 -10.55311 -9.78610 -9.40977 -8.19612 -6.32141 0.52882 1.17571 1.41228 1.45809 1.47806 1.53289 2.18990 2.44961 2.50465 3.13752 3.53002 3.83261 3.94009 4.16792 4.33507 4.41084 4.43656 4.55302 4.58145 4.68178 4.70512 4.81058 4.90252 4.98681 5.34362 5.40291 5.54697 5.64841 5.87359 5.87862 6.21273 6.49673 6.60283 6.83611 7.32213 7.37499 8.92484 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048698 B = 0.004831 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.831445 B = 5795.069853 C = 5940.211850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.611 5.611 3 C 0.134 3.866 4 C 0.024 3.976 5 C -0.544 4.544 6 H 0.066 0.934 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.970 3.030 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.259 1.259 13 C 0.579 3.421 14 O -0.601 6.601 15 C -0.315 4.315 16 C 0.066 3.934 17 N -0.321 5.321 18 N -0.361 5.361 19 C 0.086 3.914 20 C 0.128 3.872 21 H 0.096 0.904 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.053 0.947 26 H -0.027 1.027 27 H 0.000 1.000 28 H 0.264 0.736 29 H 0.231 0.769 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -15.293 8.471 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.342 5.342 3 C 0.012 3.988 4 C -0.014 4.014 5 C -0.583 4.583 6 H 0.085 0.915 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.370 3.630 14 O -0.484 6.484 15 C -0.330 4.330 16 C -0.120 4.120 17 N -0.142 5.142 18 N -0.139 5.139 19 C -0.053 4.053 20 C -0.025 4.025 21 H 0.114 0.886 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.072 0.928 26 H -0.009 1.009 27 H 0.019 0.981 28 H 0.072 0.928 29 H 0.246 0.754 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.613 -16.345 8.306 20.256 hybrid contribution 1.316 1.397 -0.528 1.990 sum -7.297 -14.947 7.779 18.362 Atomic orbital electron populations 1.22518 0.77844 1.04895 1.02428 1.47846 1.08440 1.05539 1.72369 1.21482 0.96148 0.83359 0.97841 1.19212 0.95077 0.94588 0.92543 1.21556 1.36626 1.06971 0.93122 0.91536 1.26018 0.96842 1.01880 0.95032 1.70119 1.48059 1.41210 0.98048 0.85428 0.79062 0.78887 0.77219 1.19539 1.20866 1.18371 1.17802 0.86119 0.83812 0.75257 1.90709 1.15660 1.88149 1.53900 1.20253 0.94702 0.93116 1.24933 1.25531 0.95136 0.94971 0.96346 1.77121 1.05608 1.05881 1.25563 1.48809 1.03286 1.08750 1.53081 1.22407 1.06097 0.71462 1.05299 1.23230 0.96137 0.88394 0.94750 0.88631 0.89171 0.91110 0.88991 0.92846 1.00894 0.98127 0.92777 0.75355 0.88525 0.88066 0.86718 0.78000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.64 8.56 127.77 1.09 2.73 16 2 N -0.61 -23.07 2.87 -850.66 -2.44 -25.52 16 3 C 0.13 5.95 5.34 86.38 0.46 6.41 16 4 C 0.02 1.33 5.30 29.85 0.16 1.49 16 5 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 6 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 7 C 0.00 0.01 5.46 84.66 0.46 0.47 16 8 N -0.93 -58.76 13.29 21.45 0.28 -58.48 16 9 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 13 C 0.58 23.37 7.67 86.67 0.66 24.04 16 14 O -0.60 -29.51 16.47 -4.04 -0.07 -29.58 16 15 C -0.32 -9.88 6.04 -20.15 -0.12 -10.00 16 16 C 0.07 1.69 9.92 85.65 0.85 2.54 16 17 N -0.32 -8.14 12.50 -56.27 -0.70 -8.84 16 18 N -0.36 -7.78 3.98 -367.77 -1.46 -9.24 16 19 C 0.09 0.89 11.44 127.77 1.46 2.35 16 20 C 0.13 3.30 11.30 84.28 0.95 4.25 16 21 H 0.10 1.77 6.23 -2.39 -0.01 1.75 16 22 H 0.09 2.11 7.79 -2.39 -0.02 2.09 16 23 H 0.07 1.70 6.72 -2.38 -0.02 1.68 16 24 H 0.09 3.53 7.91 -2.39 -0.02 3.51 16 25 H 0.05 2.57 7.39 -2.39 -0.02 2.55 16 26 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 27 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.23 4.40 4.16 -2.91 -0.01 4.39 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.20 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -82.07 285.11 4.96 -77.11 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.11 Total: 4.82 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 6.21 Total: 2.53 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -4.33 Total: -102.08 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.07 Total: -29.58 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -82.07 4.96 -77.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259334564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.493 kcal (2) G-P(sol) polarization free energy of solvation -82.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds