Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35522 * 117.00062 * 2 1 4 4 N 1.32819 * 120.50940 * 359.71622 * 3 2 1 5 5 C 1.31760 * 120.71970 * 180.27943 * 4 3 2 6 6 N 1.31786 * 121.81039 * 359.97438 * 5 4 3 7 7 C 1.32492 * 120.96909 * 0.02562 * 6 5 4 8 8 C 1.38232 * 119.17265 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.82700 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47588 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47310 * 300.02529 * 9 8 7 12 12 N 1.46896 * 109.46723 * 296.68740 * 11 9 8 13 13 C 1.53009 * 109.47296 * 60.02194 * 9 8 7 14 14 C 1.50693 * 109.47091 * 174.03452 * 13 9 8 15 15 H 1.08004 * 120.00606 * 359.46674 * 14 13 9 16 16 C 1.37879 * 119.99691 * 179.46594 * 14 13 9 17 17 N 1.31514 * 120.00321 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00060 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46844 * 60.00252 * 18 16 14 20 20 H 1.48500 * 109.47053 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47336 * 300.00292 * 18 16 14 22 22 H 1.08999 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47295 * 300.00213 * 1 2 3 24 24 H 1.09001 * 109.47402 * 60.00205 * 1 2 3 25 25 H 1.07995 * 119.09901 * 180.02562 * 5 4 3 26 26 H 1.07994 * 120.41423 * 179.97438 * 7 6 5 27 27 H 1.08998 * 109.46920 * 56.68524 * 11 9 8 28 28 H 1.08999 * 109.47365 * 176.69125 * 11 9 8 29 29 H 1.00905 * 110.99959 * 174.63653 * 12 11 9 30 30 H 1.00897 * 111.00186 * 298.59337 * 12 11 9 31 31 H 1.08999 * 109.46888 * 294.03883 * 13 9 8 32 32 H 1.08999 * 109.46552 * 54.03345 * 13 9 8 33 33 H 0.97003 * 120.00355 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3308 2.3278 -0.0057 5 6 1.9247 3.5040 -0.0112 6 7 3.2375 3.6193 -0.0109 7 6 4.0161 2.5472 -0.0054 8 6 3.4354 1.2928 0.0005 9 6 4.2853 0.0485 0.0063 10 1 3.6417 -0.8312 0.0100 11 6 5.1689 0.0285 -1.2427 12 7 4.3218 -0.0431 -2.4406 13 6 5.1684 0.0397 1.2558 14 6 5.9097 -1.2697 1.3379 15 1 5.7590 -2.0241 0.5798 16 6 6.7804 -1.5048 2.3808 17 7 6.9636 -0.5865 3.3042 18 14 7.6988 -3.1283 2.4830 19 1 8.5377 -3.2995 1.2697 20 1 8.5661 -3.1313 3.6883 21 1 6.7231 -4.2443 2.5717 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.3191 4.3981 -0.0153 26 1 5.0909 2.6521 -0.0056 27 1 5.7704 0.9369 -1.2767 28 1 5.8255 -0.8409 -1.2095 29 1 4.8762 0.0304 -3.2805 30 1 3.7708 -0.8883 -2.4438 31 1 5.8843 0.8597 1.2005 32 1 4.5452 0.1606 2.1419 33 1 7.5764 -0.7517 4.0377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259685539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = -2.520176 kcal Electronic energy + Delta-G solvation = -16944.181434 eV Core-core repulsion = 14198.047939 eV Total energy + Delta-G solvation = -2746.133495 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.85777 -38.07173 -36.32409 -32.88067 -32.71816 -31.83629 -29.44912 -27.30519 -25.78593 -23.75456 -23.23303 -22.63238 -19.57214 -18.42959 -17.65644 -16.41322 -15.86593 -15.26488 -14.89175 -14.70960 -14.38708 -14.11951 -13.81435 -13.46531 -13.05065 -12.74665 -12.28099 -11.82096 -11.51953 -11.39339 -11.19307 -10.89788 -10.73388 -10.33274 -10.00662 -9.89303 -9.57762 -9.17575 -8.91021 -8.42503 -8.30154 -8.15130 -6.05026 -4.08003 1.44209 1.59345 3.26084 3.29184 3.34645 3.36101 4.22645 4.39171 4.42546 4.62770 5.06409 5.19484 5.31022 5.38582 5.40598 5.52442 5.57815 5.69833 5.90787 6.00900 6.19819 6.52526 6.65905 6.80514 6.88950 7.24332 7.46100 7.54879 7.60993 7.69881 7.82418 7.93083 8.32798 8.46731 8.96726 9.55916 11.05896 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026777 B = 0.007010 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.435824 B = 3993.132733 C = 4108.480812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.294 6.294 3 C 0.355 3.645 4 N -0.580 5.580 5 C 0.303 3.697 6 N -0.541 5.541 7 C 0.167 3.833 8 C -0.143 4.143 9 C -0.032 4.032 10 H 0.076 0.924 11 C 0.075 3.925 12 N -0.856 5.856 13 C 0.034 3.966 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.094 0.906 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.190 0.810 26 H 0.169 0.831 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.331 0.669 30 H 0.335 0.665 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 2.850 -8.187 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.198 6.198 3 C 0.168 3.832 4 N -0.310 5.310 5 C 0.015 3.985 6 N -0.259 5.259 7 C 0.006 3.994 8 C -0.148 4.148 9 C -0.052 4.052 10 H 0.094 0.906 11 C -0.055 4.055 12 N -0.384 5.384 13 C -0.003 4.003 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.113 0.887 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.206 0.794 26 H 0.186 0.814 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.691 4.038 -7.728 13.037 hybrid contribution 1.257 -2.351 -0.006 2.666 sum -8.434 1.688 -7.734 11.567 Atomic orbital electron populations 1.22847 0.77779 1.02799 1.02136 1.86285 1.22304 1.24139 1.87037 1.19887 0.89355 0.84536 0.89380 1.67953 1.42088 0.99330 1.21619 1.24376 0.88772 0.93523 0.91860 1.68326 1.06422 1.34172 1.17008 1.22870 1.00585 0.86253 0.89727 1.20968 0.91481 0.99113 1.03189 1.20213 0.95670 0.92286 0.97073 0.90556 1.21842 0.93996 1.01161 0.88512 1.58821 1.29663 1.45232 1.04694 1.19139 0.93448 0.97520 0.90235 1.21117 1.24447 1.01066 1.09154 0.92623 1.25001 0.96905 0.96664 0.95677 1.69947 1.36645 1.33761 1.12767 0.86678 0.79792 0.84206 0.77441 1.20281 1.21267 1.20260 0.88733 0.92480 0.92491 0.79355 0.81430 0.91758 0.93463 0.85764 0.85300 0.96107 0.96388 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.41 101.05 1.05 1.56 16 2 O -0.29 -5.05 9.39 -18.26 -0.17 -5.22 16 3 C 0.35 6.51 7.50 -16.70 -0.13 6.38 16 4 N -0.58 -9.79 9.38 -14.64 -0.14 -9.92 16 5 C 0.30 4.74 12.28 -92.19 -1.13 3.61 16 6 N -0.54 -9.37 10.43 -14.65 -0.15 -9.52 16 7 C 0.17 3.03 10.05 -17.27 -0.17 2.86 16 8 C -0.14 -2.71 4.49 -104.20 -0.47 -3.18 16 9 C -0.03 -0.65 2.17 -91.77 -0.20 -0.85 16 10 H 0.08 1.61 7.11 -51.93 -0.37 1.24 16 11 C 0.07 1.34 5.93 -3.82 -0.02 1.31 16 12 N -0.86 -12.89 9.26 -10.37 -0.10 -12.98 16 13 C 0.03 0.84 4.18 -27.88 -0.12 0.72 16 14 C -0.52 -13.94 8.36 -34.44 -0.29 -14.23 16 15 H 0.06 1.44 7.16 -52.48 -0.38 1.07 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 24 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 25 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 26 H 0.17 2.88 7.33 -52.49 -0.38 2.49 16 27 H 0.06 1.13 7.36 -51.93 -0.38 0.75 16 28 H 0.05 0.90 6.94 -51.93 -0.36 0.54 16 29 H 0.33 4.23 9.08 -39.29 -0.36 3.87 16 30 H 0.34 4.83 9.05 -39.29 -0.36 4.47 16 31 H 0.02 0.53 7.70 -51.93 -0.40 0.13 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 284.06 15.07 4.28 4.28 Total: -1.00 -30.69 284.06 -6.36 -37.06 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.23 Total: 5.91 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.57 Total: -0.28 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.35 Total: -57.82 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.17 Total: -5.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.69 -6.36 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259685539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.537 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds