Wall clock time and date at job start Mon Mar 30 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35522 * 117.00062 * 2 1 4 4 N 1.32819 * 120.50940 * 359.71622 * 3 2 1 5 5 C 1.31760 * 120.71970 * 180.27943 * 4 3 2 6 6 N 1.31786 * 121.81039 * 359.97438 * 5 4 3 7 7 C 1.32492 * 120.96909 * 0.02562 * 6 5 4 8 8 C 1.38232 * 119.17265 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.82700 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47588 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47310 * 300.02529 * 9 8 7 12 12 N 1.46896 * 109.46723 * 296.68740 * 11 9 8 13 13 C 1.53009 * 109.47296 * 60.02194 * 9 8 7 14 14 C 1.50693 * 109.47091 * 174.03452 * 13 9 8 15 15 H 1.08004 * 120.00606 * 359.46674 * 14 13 9 16 16 C 1.37879 * 119.99691 * 179.46594 * 14 13 9 17 17 N 1.31514 * 120.00321 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00060 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46844 * 60.00252 * 18 16 14 20 20 H 1.48500 * 109.47053 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47336 * 300.00292 * 18 16 14 22 22 H 1.08999 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47295 * 300.00213 * 1 2 3 24 24 H 1.09001 * 109.47402 * 60.00205 * 1 2 3 25 25 H 1.07995 * 119.09901 * 180.02562 * 5 4 3 26 26 H 1.07994 * 120.41423 * 179.97438 * 7 6 5 27 27 H 1.08998 * 109.46920 * 56.68524 * 11 9 8 28 28 H 1.08999 * 109.47365 * 176.69125 * 11 9 8 29 29 H 1.00905 * 110.99959 * 174.63653 * 12 11 9 30 30 H 1.00897 * 111.00186 * 298.59337 * 12 11 9 31 31 H 1.08999 * 109.46888 * 294.03883 * 13 9 8 32 32 H 1.08999 * 109.46552 * 54.03345 * 13 9 8 33 33 H 0.97003 * 120.00355 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3308 2.3278 -0.0057 5 6 1.9247 3.5040 -0.0112 6 7 3.2375 3.6193 -0.0109 7 6 4.0161 2.5472 -0.0054 8 6 3.4354 1.2928 0.0005 9 6 4.2853 0.0485 0.0063 10 1 3.6417 -0.8312 0.0100 11 6 5.1689 0.0285 -1.2427 12 7 4.3218 -0.0431 -2.4406 13 6 5.1684 0.0397 1.2558 14 6 5.9097 -1.2697 1.3379 15 1 5.7590 -2.0241 0.5798 16 6 6.7804 -1.5048 2.3808 17 7 6.9636 -0.5865 3.3042 18 14 7.6988 -3.1283 2.4830 19 1 8.5377 -3.2995 1.2697 20 1 8.5661 -3.1313 3.6883 21 1 6.7231 -4.2443 2.5717 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.3191 4.3981 -0.0153 26 1 5.0909 2.6521 -0.0056 27 1 5.7704 0.9369 -1.2767 28 1 5.8255 -0.8409 -1.2095 29 1 4.8762 0.0304 -3.2805 30 1 3.7708 -0.8883 -2.4438 31 1 5.8843 0.8597 1.2005 32 1 4.5452 0.1606 2.1419 33 1 7.5764 -0.7517 4.0377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259685539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:53 Heat of formation + Delta-G solvation = -25.547473 kcal Electronic energy + Delta-G solvation = -16945.179972 eV Core-core repulsion = 14198.047939 eV Total energy + Delta-G solvation = -2747.132034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.20150 -39.34730 -37.88973 -34.83570 -34.05266 -33.26548 -31.14123 -28.43315 -27.56303 -25.10839 -24.62114 -24.44843 -21.17696 -19.70369 -19.12118 -18.31422 -17.15047 -16.71511 -16.51356 -16.13849 -15.74637 -15.59403 -15.12102 -15.00437 -14.39406 -14.33551 -14.06425 -13.25167 -13.12408 -12.88059 -12.67934 -12.57281 -12.50994 -11.94633 -11.70548 -11.51976 -11.17595 -11.04298 -10.55209 -10.27651 -9.71521 -9.48944 -8.17272 -6.27322 0.08360 0.21313 1.41683 1.43525 1.51264 2.03137 2.42018 2.87994 3.16062 3.17390 3.35891 3.74959 3.81517 4.09880 4.13461 4.42571 4.43077 4.47636 4.65022 4.72066 4.73772 4.98770 5.06753 5.19488 5.38722 5.47264 5.70184 5.82463 5.92720 6.18258 6.23757 6.30786 6.69854 6.86634 7.13857 7.41079 8.94057 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026777 B = 0.007010 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.435824 B = 3993.132733 C = 4108.480812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.350 3.650 4 N -0.579 5.579 5 C 0.308 3.692 6 N -0.551 5.551 7 C 0.164 3.836 8 C -0.167 4.167 9 C -0.016 4.016 10 H 0.065 0.935 11 C 0.086 3.914 12 N -0.849 5.849 13 C 0.044 3.956 14 C -0.530 4.530 15 H 0.063 0.937 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.959 3.041 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.270 1.270 22 H 0.123 0.877 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.233 0.767 26 H 0.169 0.831 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.348 0.652 30 H 0.341 0.659 31 H 0.004 0.996 32 H -0.020 1.020 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 2.499 -9.362 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.215 6.215 3 C 0.164 3.836 4 N -0.310 5.310 5 C 0.021 3.979 6 N -0.269 5.269 7 C 0.003 3.997 8 C -0.172 4.172 9 C -0.036 4.036 10 H 0.083 0.917 11 C -0.044 4.044 12 N -0.380 5.380 13 C 0.007 3.993 14 C -0.568 4.568 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.195 1.195 22 H 0.141 0.859 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.249 0.751 26 H 0.186 0.814 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.022 0.978 32 H -0.002 1.002 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.523 3.676 -8.935 14.285 hybrid contribution 1.393 -2.180 0.354 2.611 sum -9.129 1.496 -8.581 12.618 Atomic orbital electron populations 1.23149 0.75456 1.04874 1.02536 1.86264 1.24689 1.23833 1.86694 1.20018 0.89322 0.85385 0.88907 1.68083 1.41717 0.99265 1.21888 1.25301 0.88641 0.94534 0.89462 1.68402 1.07221 1.33581 1.17713 1.22951 1.00985 0.86426 0.89380 1.20845 0.92053 0.98690 1.05618 1.19852 0.95058 0.92753 0.95970 0.91701 1.21587 0.93538 1.00552 0.88759 1.58700 1.29327 1.45619 1.04312 1.18938 0.93036 0.96247 0.91101 1.21521 1.24277 1.01890 1.09149 0.91897 1.25897 0.97972 1.00281 0.95359 1.70089 1.37612 1.35958 1.13529 0.85592 0.78546 0.79753 0.77712 1.18990 1.21194 1.19497 0.85930 0.92437 0.91637 0.75102 0.81350 0.91660 0.94879 0.83923 0.84635 0.97750 1.00166 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.41 113.37 1.18 1.98 16 2 O -0.31 -10.42 9.39 -88.25 -0.83 -11.24 16 3 C 0.35 12.59 7.50 84.82 0.64 13.22 16 4 N -0.58 -18.54 9.38 -312.90 -2.94 -21.48 16 5 C 0.31 8.95 12.28 180.90 2.22 11.17 16 6 N -0.55 -18.39 10.43 -200.27 -2.09 -20.48 16 7 C 0.16 5.95 10.05 84.59 0.85 6.80 16 8 C -0.17 -6.37 4.49 -19.59 -0.09 -6.46 16 9 C -0.02 -0.66 2.17 -11.54 -0.03 -0.68 16 10 H 0.06 2.78 7.11 -2.39 -0.02 2.76 16 11 C 0.09 3.06 5.93 86.31 0.51 3.57 16 12 N -0.85 -24.44 9.26 -186.72 -1.73 -26.17 16 13 C 0.04 2.27 4.18 29.85 0.12 2.39 16 14 C -0.53 -28.89 8.36 25.60 0.21 -28.68 16 15 H 0.06 3.26 7.16 -2.91 -0.02 3.24 16 16 C 0.00 0.16 5.46 84.66 0.46 0.62 16 17 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 18 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 24 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 25 H 0.23 4.46 8.06 -2.91 -0.02 4.44 16 26 H 0.17 5.90 7.33 -2.91 -0.02 5.88 16 27 H 0.06 2.28 7.36 -2.39 -0.02 2.27 16 28 H 0.03 1.25 6.94 -2.39 -0.02 1.24 16 29 H 0.35 8.22 9.08 -89.69 -0.81 7.40 16 30 H 0.34 9.32 9.05 -89.70 -0.81 8.51 16 31 H 0.00 0.22 7.70 -2.39 -0.02 0.21 16 32 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -66.06 284.06 0.33 -65.74 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.49 Total: 19.86 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.09 Total: 3.95 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -6.47 Total: -123.61 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.83 Total: -11.24 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.06 0.33 -65.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259685539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.188 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds