Wall clock time and date at job start Mon Mar 30 2020 03:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99542 * 2 1 4 4 H 1.48498 * 109.47273 * 269.99695 * 3 2 1 5 5 H 1.48493 * 109.47390 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46737 * 149.99984 * 3 2 1 7 7 C 1.37871 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99923 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00286 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47339 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.91358 * 308.90002 * 10 9 7 12 12 C 1.55155 * 111.00688 * 72.79682 * 10 9 7 13 13 C 1.54330 * 102.94292 * 153.57723 * 12 10 9 14 14 N 1.47026 * 107.26840 * 337.81024 * 13 12 10 15 15 C 1.34775 * 125.64519 * 178.90227 * 14 13 12 16 16 O 1.21275 * 119.99840 * 180.02562 * 15 14 13 17 17 C 1.50702 * 120.00105 * 0.02606 * 15 14 13 18 18 C 1.53779 * 113.61534 * 277.49904 * 17 15 14 19 19 C 1.53783 * 87.08214 * 220.02028 * 18 17 15 20 20 C 1.53782 * 113.61624 * 179.97438 * 17 15 14 21 21 C 1.47420 * 108.70428 * 358.94103 * 14 13 12 22 22 H 0.96994 * 120.00550 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47441 * 59.99324 * 9 7 2 24 24 H 1.09002 * 109.46762 * 299.99533 * 9 7 2 25 25 H 1.08998 * 110.71769 * 35.21845 * 12 10 9 26 26 H 1.08991 * 110.72382 * 271.94241 * 12 10 9 27 27 H 1.08998 * 109.88224 * 218.39343 * 13 12 10 28 28 H 1.08998 * 109.88221 * 97.22736 * 13 12 10 29 29 H 1.08999 * 112.85086 * 48.80402 * 17 15 14 30 30 H 1.09004 * 113.61360 * 334.56157 * 18 17 15 31 31 H 1.08998 * 113.61963 * 105.46917 * 18 17 15 32 32 H 1.09004 * 113.61311 * 270.88223 * 19 18 17 33 33 H 1.08992 * 113.69624 * 139.99051 * 19 18 17 34 34 H 1.08993 * 113.61972 * 254.52966 * 20 17 15 35 35 H 1.09001 * 113.61058 * 25.35544 * 20 17 15 36 36 H 1.08997 * 110.36858 * 142.96748 * 21 14 13 37 37 H 1.08997 * 110.36396 * 265.17736 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1292 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 -0.0001 11 1 3.5483 -3.2165 0.7920 12 6 3.8038 -3.3032 -1.3839 13 6 4.9118 -4.3766 -1.4287 14 7 5.9577 -3.9639 -0.4813 15 6 7.0879 -4.6472 -0.2126 16 8 7.8840 -4.2102 0.5913 17 6 7.3625 -5.9541 -0.9109 18 6 6.6581 -7.1582 -0.2638 19 6 7.9478 -7.9537 -0.5260 20 6 8.6912 -6.6074 -0.4954 21 6 5.5650 -2.6796 0.1265 22 1 -0.4851 0.8400 -0.0004 23 1 3.8746 -0.6805 0.8904 24 1 3.8752 -0.6795 -0.8895 25 1 3.9369 -2.5780 -2.1867 26 1 2.8178 -3.7643 -1.4389 27 1 5.3267 -4.4393 -2.4347 28 1 4.5039 -5.3430 -1.1327 29 1 7.2246 -5.8943 -1.9905 30 1 6.4388 -7.0187 0.7948 31 1 5.7998 -7.5186 -0.8309 32 1 7.9692 -8.4418 -1.5004 33 1 8.2228 -8.6232 0.2889 34 1 9.4738 -6.5233 -1.2493 35 1 9.0286 -6.3161 0.4993 36 1 5.8606 -2.6501 1.1752 37 1 6.0153 -1.8492 -0.4173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260219187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:53 Heat of formation + Delta-G solvation = -29.520859 kcal Electronic energy + Delta-G solvation = -16890.001259 eV Core-core repulsion = 14246.237270 eV Total energy + Delta-G solvation = -2643.763989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.33142 -38.24294 -36.75720 -33.51725 -31.75097 -29.32612 -28.10526 -26.18734 -25.74596 -23.11717 -22.10531 -20.17692 -19.53084 -18.80817 -17.23655 -16.76644 -15.97411 -15.62945 -15.21672 -14.43240 -13.92179 -13.39541 -13.28400 -12.99682 -12.64946 -12.54099 -12.38898 -12.27550 -11.98392 -11.46027 -11.35594 -11.27065 -10.85799 -10.71054 -10.56743 -10.49489 -9.95111 -9.83338 -9.75686 -9.44924 -9.18560 -8.57380 -8.40368 -6.07866 -4.06270 2.74215 3.19925 3.28718 3.37162 3.40713 4.36603 4.42347 4.44815 4.53463 4.64998 4.90183 5.03464 5.19972 5.28844 5.38090 5.42038 5.48737 5.60662 5.62955 5.69090 5.71142 5.79158 5.93580 5.95729 6.16042 6.23382 6.29909 6.46124 6.55738 6.64786 6.78312 7.17512 7.32692 7.70766 7.77483 8.32742 8.48932 8.96250 9.54519 11.05314 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.054111 B = 0.004912 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.328559 B = 5698.973934 C = 6010.793568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.073 0.927 9 C -0.004 4.004 10 C -0.080 4.080 11 H 0.077 0.923 12 C -0.117 4.117 13 C 0.099 3.901 14 N -0.614 5.614 15 C 0.533 3.467 16 O -0.550 6.550 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.141 4.141 20 C -0.118 4.118 21 C 0.102 3.898 22 H 0.263 0.737 23 H 0.019 0.981 24 H 0.015 0.985 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.924 -13.213 -4.064 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.041 4.041 10 C -0.099 4.099 11 H 0.096 0.904 12 C -0.155 4.155 13 C -0.024 4.024 14 N -0.347 5.347 15 C 0.322 3.678 16 O -0.428 6.428 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.179 4.179 20 C -0.156 4.156 21 C -0.020 4.020 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.261 -12.902 -3.624 18.853 hybrid contribution 0.188 1.018 -0.158 1.047 sum 13.449 -11.884 -3.781 18.341 Atomic orbital electron populations 1.69903 1.06287 1.26923 1.51052 1.25006 0.94701 0.99111 0.94548 0.86819 0.80451 0.83762 0.78526 1.20303 1.21388 1.18958 1.21050 0.89110 0.94456 1.50903 0.90895 1.19542 0.97409 0.90547 0.96644 1.22302 0.91176 0.99847 0.96584 0.90416 1.22609 0.97339 0.96732 0.98797 1.22164 0.88951 0.99104 0.92183 1.48637 1.20063 1.23181 1.42800 1.20159 0.79993 0.85326 0.82369 1.90662 1.46364 1.69824 1.35965 1.22753 0.99871 0.91997 1.00943 1.22798 0.97474 0.94272 1.01447 1.22833 0.96342 0.96571 1.02141 1.22812 0.95030 0.94648 1.03121 1.22518 0.96552 0.84469 0.98453 0.92710 0.96226 0.96651 0.90645 0.89798 0.92020 0.91722 0.87256 0.89692 0.90671 0.89976 0.91053 0.91197 0.88757 0.90999 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.04 9.41 -34.44 -0.32 -14.37 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.70 16 9 C 0.00 -0.08 3.55 -27.88 -0.10 -0.18 16 10 C -0.08 -1.50 2.95 -88.47 -0.26 -1.76 16 11 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 12 C -0.12 -1.87 6.17 -24.89 -0.15 -2.03 16 13 C 0.10 1.30 6.45 -3.06 -0.02 1.28 16 14 N -0.61 -9.53 3.33 -170.52 -0.57 -10.10 16 15 C 0.53 8.29 7.38 -10.99 -0.08 8.21 16 16 O -0.55 -10.51 16.15 5.56 0.09 -10.42 16 17 C -0.13 -1.51 3.36 -90.96 -0.31 -1.81 16 18 C -0.12 -1.17 7.63 -25.92 -0.20 -1.37 16 19 C -0.14 -1.16 8.08 -25.90 -0.21 -1.37 16 20 C -0.12 -1.22 7.41 -25.90 -0.19 -1.41 16 21 C 0.10 1.77 6.37 -2.53 -0.02 1.76 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 24 H 0.02 0.34 7.40 -51.93 -0.38 -0.04 16 25 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.11 1.04 8.09 -51.93 -0.42 0.62 16 30 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.14 7.43 -51.93 -0.39 0.75 16 36 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 37 H 0.06 1.12 8.04 -51.93 -0.42 0.71 16 LS Contribution 299.54 15.07 4.51 4.51 Total: -1.00 -31.26 299.54 -8.01 -39.28 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.20 Total: -2.23 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.96 Total: -11.22 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.21 Total: -36.54 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.26 -8.01 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.754 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds