Wall clock time and date at job start Mon Mar 30 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09000 * 110.88879 * 56.12383 * 9 7 2 11 11 C 1.55154 * 111.01000 * 292.19603 * 9 7 2 12 12 C 1.54323 * 102.94666 * 206.42733 * 11 9 7 13 13 N 1.47021 * 107.26979 * 22.19004 * 12 11 9 14 14 C 1.34773 * 125.64980 * 181.09517 * 13 12 11 15 15 O 1.21282 * 120.00250 * 179.97438 * 14 13 12 16 16 C 1.50701 * 119.99681 * 359.96052 * 14 13 12 17 17 C 1.54263 * 110.03483 * 297.90557 * 16 14 13 18 18 C 1.54966 * 104.16598 * 217.13897 * 17 16 14 19 19 C 1.54892 * 102.77408 * 37.88527 * 18 17 16 20 20 C 1.53879 * 110.03358 * 180.69186 * 16 14 13 21 21 C 1.47424 * 108.70314 * 1.06258 * 13 12 11 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.72002 * 324.79535 * 11 9 7 24 24 H 1.09003 * 110.72006 * 88.06147 * 11 9 7 25 25 H 1.09003 * 109.87778 * 262.77532 * 12 11 9 26 26 H 1.09000 * 109.88092 * 141.61234 * 12 11 9 27 27 H 1.09001 * 110.01826 * 59.29940 * 16 14 13 28 28 H 1.09000 * 110.48600 * 335.78475 * 17 16 14 29 29 H 1.09006 * 110.48570 * 98.42477 * 17 16 14 30 30 H 1.09006 * 110.71649 * 279.57534 * 18 17 16 31 31 H 1.08996 * 110.76871 * 156.22276 * 18 17 16 32 32 H 1.08998 * 110.48530 * 203.41067 * 19 18 17 33 33 H 1.08999 * 110.59621 * 80.81948 * 19 18 17 34 34 H 1.09001 * 110.02992 * 238.57358 * 20 16 14 35 35 H 1.09003 * 110.03064 * 359.94691 * 20 16 14 36 36 H 1.09006 * 110.36904 * 217.03147 * 21 13 12 37 37 H 1.09002 * 110.36550 * 94.70964 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.5615 -2.5535 -0.8372 11 6 0.5047 -2.7046 1.3499 12 6 0.4035 -4.2407 1.4580 13 7 1.4612 -4.8086 0.6093 14 6 1.6931 -6.1221 0.4164 15 8 2.5974 -6.4782 -0.3090 16 6 0.8288 -7.1484 1.1025 17 6 0.9667 -7.0172 2.6334 18 6 0.9203 -8.4793 3.1450 19 6 1.7137 -9.2475 2.0590 20 6 1.3031 -8.5660 0.7374 21 6 2.2258 -3.7032 0.0035 22 1 -0.4850 0.8401 0.0004 23 1 1.0837 -2.2969 2.1785 24 1 -0.4874 -2.2544 1.3130 25 1 -0.5730 -4.5735 1.1059 26 1 0.5521 -4.5501 2.4925 27 1 -0.2125 -7.0159 0.8087 28 1 1.9182 -6.5527 2.8922 29 1 0.1363 -6.4422 3.0433 30 1 -0.1081 -8.8369 3.1977 31 1 1.4104 -8.5651 4.1148 32 1 1.4282 -10.2994 2.0505 33 1 2.7864 -9.1455 2.2236 34 1 0.4918 -9.1216 0.2670 35 1 2.1579 -8.5116 0.0632 36 1 2.5146 -3.9560 -1.0167 37 1 3.1075 -3.4783 0.6036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:02 Heat of formation + Delta-G solvation = -58.908342 kcal Electronic energy + Delta-G solvation = -17222.594631 eV Core-core repulsion = 14577.556305 eV Total energy + Delta-G solvation = -2645.038326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89799 -37.43261 -36.32776 -33.04484 -30.68066 -29.05705 -28.67040 -28.11730 -24.91369 -22.75060 -20.76767 -20.62774 -19.66856 -18.40531 -17.09931 -16.50687 -15.51988 -15.13530 -15.02428 -14.59388 -13.88016 -13.56705 -13.33774 -12.74707 -12.54903 -11.99523 -11.74482 -11.46928 -11.31135 -11.24471 -11.06230 -11.00905 -10.98984 -10.75397 -10.74264 -10.47770 -10.46273 -9.80230 -9.47634 -9.20793 -9.00735 -8.47928 -7.97159 -6.11826 -4.15259 3.08907 3.28549 3.33169 3.35841 3.60039 4.37968 4.52260 4.63099 4.79116 5.16706 5.23605 5.40756 5.44927 5.50804 5.61773 5.64964 5.67538 5.80521 5.86638 5.91347 6.01285 6.02998 6.20549 6.27351 6.28922 6.36629 6.44235 6.63104 6.83575 6.98677 7.10850 7.42987 7.69324 7.87824 8.17242 8.28343 8.66961 8.86859 9.49747 10.98382 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.054472 B = 0.005304 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.903403 B = 5277.432901 C = 5499.933741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.046 3.954 10 H 0.042 0.958 11 C -0.114 4.114 12 C 0.094 3.906 13 N -0.610 5.610 14 C 0.525 3.475 15 O -0.557 6.557 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.119 4.119 21 C 0.107 3.893 22 H 0.262 0.738 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 -12.987 6.154 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.027 3.973 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.029 4.029 13 N -0.342 5.342 14 C 0.313 3.687 15 O -0.437 6.437 16 C -0.131 4.131 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.015 4.015 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.239 -13.112 5.757 14.374 hybrid contribution 0.269 1.047 0.055 1.083 sum -0.970 -12.065 5.812 13.427 Atomic orbital electron populations 1.69937 1.05950 1.26904 1.49878 1.24954 0.94864 0.99147 0.94677 0.86617 0.79581 0.82836 0.78752 1.20155 1.21269 1.20187 1.20920 0.92941 0.89849 1.51713 0.92280 1.19829 0.92810 0.91059 0.93601 0.94007 1.22660 1.02550 0.89116 1.00913 1.22320 0.89779 0.97529 0.93231 1.48701 1.33362 1.05033 1.47060 1.20154 0.84818 0.82177 0.81507 1.90612 1.33400 1.79855 1.39784 1.21871 1.00017 0.94818 0.96348 1.22393 1.02563 0.97306 0.92899 1.22520 1.00329 0.94922 0.98323 1.22352 1.00176 0.98847 0.94698 1.22156 1.02378 0.92863 0.98271 1.22593 0.95686 0.86218 0.96967 0.92808 0.92127 0.90279 0.92694 0.92590 0.88854 0.91221 0.90751 0.91390 0.91533 0.91792 0.91647 0.91762 0.89248 0.92109 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.49 12.63 55.43 0.70 -23.79 16 2 C 0.07 1.76 5.37 -17.82 -0.10 1.67 16 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.66 8.49 -34.44 -0.29 -13.96 16 8 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 9 C 0.05 1.11 2.85 -89.62 -0.26 0.86 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.11 -2.43 5.91 -24.90 -0.15 -2.57 16 12 C 0.09 1.65 6.01 -3.06 -0.02 1.63 16 13 N -0.61 -11.83 3.33 -170.52 -0.57 -12.40 16 14 C 0.53 9.79 7.06 -10.99 -0.08 9.71 16 15 O -0.56 -12.16 15.46 5.56 0.09 -12.07 16 16 C -0.11 -1.53 2.78 -90.65 -0.25 -1.78 16 17 C -0.11 -1.37 4.93 -25.03 -0.12 -1.49 16 18 C -0.12 -1.22 6.91 -24.70 -0.17 -1.39 16 19 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 20 C -0.12 -1.52 6.40 -25.61 -0.16 -1.69 16 21 C 0.11 2.35 6.35 -2.53 -0.02 2.33 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 24 H 0.08 1.78 7.85 -51.93 -0.41 1.37 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.85 6.31 -51.93 -0.33 0.52 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 0.93 7.85 -51.93 -0.41 0.53 16 29 H 0.07 0.81 7.14 -51.93 -0.37 0.44 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.36 6.39 -51.93 -0.33 1.03 16 36 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 37 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -28.86 293.00 -8.19 -37.06 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.02 Total: -0.70 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.78 Total: -8.17 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.13 Total: -36.19 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.86 -8.19 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.853 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds