Wall clock time and date at job start Mon Mar 30 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09000 * 110.88879 * 56.12383 * 9 7 2 11 11 C 1.55154 * 111.01000 * 292.19603 * 9 7 2 12 12 C 1.54323 * 102.94666 * 206.42733 * 11 9 7 13 13 N 1.47021 * 107.26979 * 22.19004 * 12 11 9 14 14 C 1.34773 * 125.64980 * 181.09517 * 13 12 11 15 15 O 1.21282 * 120.00250 * 179.97438 * 14 13 12 16 16 C 1.50701 * 119.99681 * 359.96052 * 14 13 12 17 17 C 1.54263 * 110.03483 * 297.90557 * 16 14 13 18 18 C 1.54966 * 104.16598 * 217.13897 * 17 16 14 19 19 C 1.54892 * 102.77408 * 37.88527 * 18 17 16 20 20 C 1.53879 * 110.03358 * 180.69186 * 16 14 13 21 21 C 1.47424 * 108.70314 * 1.06258 * 13 12 11 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.72002 * 324.79535 * 11 9 7 24 24 H 1.09003 * 110.72006 * 88.06147 * 11 9 7 25 25 H 1.09003 * 109.87778 * 262.77532 * 12 11 9 26 26 H 1.09000 * 109.88092 * 141.61234 * 12 11 9 27 27 H 1.09001 * 110.01826 * 59.29940 * 16 14 13 28 28 H 1.09000 * 110.48600 * 335.78475 * 17 16 14 29 29 H 1.09006 * 110.48570 * 98.42477 * 17 16 14 30 30 H 1.09006 * 110.71649 * 279.57534 * 18 17 16 31 31 H 1.08996 * 110.76871 * 156.22276 * 18 17 16 32 32 H 1.08998 * 110.48530 * 203.41067 * 19 18 17 33 33 H 1.08999 * 110.59621 * 80.81948 * 19 18 17 34 34 H 1.09001 * 110.02992 * 238.57358 * 20 16 14 35 35 H 1.09003 * 110.03064 * 359.94691 * 20 16 14 36 36 H 1.09006 * 110.36904 * 217.03147 * 21 13 12 37 37 H 1.09002 * 110.36550 * 94.70964 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.5615 -2.5535 -0.8372 11 6 0.5047 -2.7046 1.3499 12 6 0.4035 -4.2407 1.4580 13 7 1.4612 -4.8086 0.6093 14 6 1.6931 -6.1221 0.4164 15 8 2.5974 -6.4782 -0.3090 16 6 0.8288 -7.1484 1.1025 17 6 0.9667 -7.0172 2.6334 18 6 0.9203 -8.4793 3.1450 19 6 1.7137 -9.2475 2.0590 20 6 1.3031 -8.5660 0.7374 21 6 2.2258 -3.7032 0.0035 22 1 -0.4850 0.8401 0.0004 23 1 1.0837 -2.2969 2.1785 24 1 -0.4874 -2.2544 1.3130 25 1 -0.5730 -4.5735 1.1059 26 1 0.5521 -4.5501 2.4925 27 1 -0.2125 -7.0159 0.8087 28 1 1.9182 -6.5527 2.8922 29 1 0.1363 -6.4422 3.0433 30 1 -0.1081 -8.8369 3.1977 31 1 1.4104 -8.5651 4.1148 32 1 1.4282 -10.2994 2.0505 33 1 2.7864 -9.1455 2.2236 34 1 0.4918 -9.1216 0.2670 35 1 2.1579 -8.5116 0.0632 36 1 2.5146 -3.9560 -1.0167 37 1 3.1075 -3.4783 0.6036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:02 Heat of formation + Delta-G solvation = -75.102662 kcal Electronic energy + Delta-G solvation = -17223.296869 eV Core-core repulsion = 14577.556305 eV Total energy + Delta-G solvation = -2645.740564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.31997 -38.83044 -37.70995 -34.98125 -32.38554 -30.40179 -29.78645 -29.45932 -26.78678 -24.32332 -22.02173 -21.64811 -21.36690 -19.78932 -18.60978 -18.29160 -16.80081 -16.64823 -16.41604 -16.35248 -15.17411 -14.99139 -14.44553 -14.31282 -14.20427 -13.57033 -13.45029 -13.03057 -12.93285 -12.65078 -12.56610 -12.33666 -12.20505 -12.01281 -11.92227 -11.66246 -11.55335 -11.40844 -11.31146 -10.99049 -10.71421 -10.51116 -9.57127 -8.17081 -6.26834 1.44223 1.44876 1.52553 1.63139 2.09865 2.44216 3.15018 3.47412 3.66724 3.76495 4.04658 4.12898 4.33768 4.38728 4.46873 4.50277 4.54914 4.59382 4.68261 4.71909 4.77919 4.85429 5.00428 5.06615 5.11213 5.22730 5.25194 5.27342 5.32844 5.47580 5.49813 5.55193 5.74577 5.85175 6.26195 6.67033 6.79347 7.16677 7.41104 8.92584 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.054472 B = 0.005304 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.903403 B = 5277.432901 C = 5499.933741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.022 3.978 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.040 3.960 10 H 0.011 0.989 11 C -0.105 4.105 12 C 0.105 3.895 13 N -0.614 5.614 14 C 0.519 3.481 15 O -0.596 6.596 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.121 4.121 21 C 0.116 3.884 22 H 0.264 0.736 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -14.053 7.844 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.029 0.971 11 C -0.144 4.144 12 C -0.017 4.017 13 N -0.346 5.346 14 C 0.309 3.691 15 O -0.478 6.478 16 C -0.125 4.125 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.006 4.006 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.131 0.869 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.143 -14.191 7.463 16.176 hybrid contribution 0.572 1.363 -0.536 1.573 sum -1.570 -12.828 6.927 14.663 Atomic orbital electron populations 1.70035 1.07086 1.27674 1.50426 1.25660 0.95668 1.02167 0.94289 0.85654 0.78434 0.79002 0.78825 1.20042 1.20727 1.19452 1.21228 0.92996 0.91300 1.51990 0.92800 1.19720 0.92880 0.91199 0.94090 0.97124 1.22439 1.01010 0.92174 0.98736 1.22319 0.90180 0.94397 0.94828 1.48774 1.33525 1.04992 1.47273 1.21118 0.84776 0.82287 0.80878 1.90595 1.35330 1.80379 1.41528 1.21995 0.99676 0.93485 0.97357 1.22439 1.02356 0.99234 0.91169 1.22514 1.01501 0.92844 0.98307 1.22358 0.99710 1.00107 0.93726 1.22181 1.01832 0.92762 0.99075 1.22252 0.95401 0.86712 0.96272 0.92713 0.92806 0.91633 0.90475 0.89271 0.86914 0.92984 0.88928 0.89338 0.90258 0.89619 0.92868 0.89791 0.92408 0.93816 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.85 12.63 21.45 0.27 -50.58 16 2 C 0.02 1.19 5.37 84.66 0.45 1.65 16 3 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -29.05 8.49 25.60 0.22 -28.84 16 8 H 0.05 2.89 7.77 -2.92 -0.02 2.87 16 9 C 0.04 2.00 2.85 -10.15 -0.03 1.97 16 10 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 11 C -0.11 -4.46 5.91 31.78 0.19 -4.27 16 12 C 0.10 3.45 6.01 86.73 0.52 3.97 16 13 N -0.61 -23.55 3.33 -811.78 -2.70 -26.25 16 14 C 0.52 19.08 7.06 87.66 0.62 19.70 16 15 O -0.60 -26.58 15.46 -3.04 -0.05 -26.63 16 16 C -0.10 -2.67 2.78 -10.81 -0.03 -2.70 16 17 C -0.11 -2.37 4.93 31.69 0.16 -2.21 16 18 C -0.11 -1.80 6.91 31.91 0.22 -1.58 16 19 C -0.12 -2.25 6.83 31.67 0.22 -2.04 16 20 C -0.12 -2.86 6.40 31.32 0.20 -2.66 16 21 C 0.12 5.25 6.35 86.86 0.55 5.80 16 22 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 23 H 0.05 2.32 8.03 -2.39 -0.02 2.31 16 24 H 0.06 2.95 7.85 -2.39 -0.02 2.93 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.09 2.40 6.31 -2.39 -0.02 2.39 16 27 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.27 7.85 -2.39 -0.02 1.26 16 29 H 0.09 1.59 7.14 -2.38 -0.02 1.58 16 30 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.76 6.39 -2.39 -0.02 1.75 16 36 H 0.04 2.08 8.04 -2.38 -0.02 2.06 16 37 H 0.05 2.41 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -63.78 293.00 3.87 -59.92 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.03 Total: 10.20 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 3.29 Total: -11.20 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -2.43 Total: -76.83 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -63.78 3.87 -59.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.187 kcal (2) G-P(sol) polarization free energy of solvation -63.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds