Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36023 * 117.00268 * 2 1 4 4 C 1.38507 * 120.87581 * 359.72925 * 3 2 1 5 5 N 1.32582 * 119.13255 * 179.69840 * 4 3 2 6 6 C 1.31721 * 121.04744 * 0.60409 * 5 4 3 7 7 N 1.31819 * 121.93976 * 359.66203 * 6 5 4 8 8 C 1.32867 * 120.74364 * 0.02562 * 7 6 5 9 9 N 1.38772 * 120.55623 * 179.97438 * 8 7 6 10 10 C 1.46899 * 111.00232 * 236.07298 * 9 8 7 11 11 C 1.46904 * 111.00257 * 0.02723 * 9 8 7 12 12 H 1.09007 * 109.46507 * 54.99443 * 11 9 8 13 13 C 1.52993 * 109.47193 * 294.99990 * 11 9 8 14 14 C 1.50702 * 109.47228 * 174.99657 * 11 9 8 15 15 H 1.07996 * 119.99824 * 359.97438 * 14 11 9 16 16 C 1.37875 * 119.99809 * 180.02562 * 14 11 9 17 17 N 1.31519 * 120.00116 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00025 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47132 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47136 * 119.99860 * 18 16 14 21 21 H 1.48501 * 109.47368 * 239.99904 * 18 16 14 22 22 H 1.09001 * 109.47103 * 300.00115 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99619 * 1 2 3 24 24 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.43872 * 359.97438 * 4 3 2 26 26 H 1.07996 * 119.03256 * 179.68964 * 6 5 4 27 27 H 1.08999 * 109.47359 * 60.00128 * 10 9 8 28 28 H 1.09006 * 109.47348 * 180.02562 * 10 9 8 29 29 H 1.09003 * 109.46892 * 300.00035 * 10 9 8 30 30 H 1.09007 * 109.47270 * 299.99893 * 13 11 9 31 31 H 1.09004 * 109.47458 * 59.99459 * 13 11 9 32 32 H 1.08994 * 109.47522 * 179.97438 * 13 11 9 33 33 H 0.97002 * 120.00240 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.3102 2.3850 -0.0056 5 7 1.9478 3.5474 0.0007 6 6 3.2639 3.6004 0.0002 7 7 4.0057 2.5107 0.0001 8 6 3.4439 1.3066 0.0000 9 7 4.2285 0.1620 -0.0006 10 6 3.8944 -0.7047 -1.1386 11 6 5.6574 0.5032 -0.0004 12 1 5.8738 1.1605 0.8418 13 6 6.0119 1.2152 -1.3073 14 6 6.4747 -0.7570 0.1229 15 1 5.9820 -1.7153 0.1944 16 6 7.8515 -0.6862 0.1455 17 7 8.4514 0.4810 0.0589 18 14 8.8646 -2.2480 0.2989 19 1 7.9572 -3.4208 0.3790 20 1 9.7460 -2.3849 -0.8882 21 1 9.6960 -2.1800 1.5275 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2307 2.3533 -0.0105 26 1 3.7497 4.5649 0.0003 27 1 4.0647 -0.1639 -2.0695 28 1 4.5236 -1.5945 -1.1147 29 1 2.8468 -0.9992 -1.0758 30 1 5.7954 0.5580 -2.1495 31 1 5.4207 2.1267 -1.3965 32 1 7.0719 1.4688 -1.3070 33 1 9.4200 0.5308 0.0752 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = 19.441177 kcal Electronic energy + Delta-G solvation = -17339.988083 eV Core-core repulsion = 14594.806904 eV Total energy + Delta-G solvation = -2745.181179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.36518 -39.37604 -38.97487 -35.06712 -33.76884 -31.97253 -30.37026 -28.43857 -27.37415 -27.17269 -24.60048 -24.26585 -21.81455 -19.11568 -18.95843 -18.26377 -17.87803 -16.99582 -16.67846 -15.98198 -15.62700 -15.33553 -15.16437 -14.95127 -14.46489 -14.18573 -13.32105 -13.03424 -12.99620 -12.88641 -12.72325 -12.50448 -12.40407 -12.05898 -11.98547 -11.89857 -11.56952 -10.97125 -10.53628 -10.12826 -9.98098 -8.84877 -8.11372 -6.25153 0.08327 0.11119 1.42656 1.43864 1.56069 2.20764 2.40836 2.71635 2.94361 3.17651 3.32968 3.34964 3.85442 3.89311 4.41602 4.45986 4.51120 4.57517 4.63336 4.75059 4.80877 5.07425 5.10175 5.16591 5.29561 5.47090 5.59723 5.69219 5.89202 6.10622 6.20727 6.37808 6.62056 6.84602 7.25617 7.43760 8.94920 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035639 B = 0.007527 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.475542 B = 3719.148011 C = 4317.371009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.312 6.312 3 C 0.001 3.999 4 C 0.079 3.921 5 N -0.524 5.524 6 C 0.267 3.733 7 N -0.542 5.542 8 C 0.319 3.681 9 N -0.475 5.475 10 C 0.044 3.956 11 C 0.231 3.769 12 H 0.010 0.990 13 C -0.149 4.149 14 C -0.529 4.529 15 H 0.062 0.938 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.964 3.036 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.282 1.282 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.122 0.878 25 H 0.205 0.795 26 H 0.216 0.784 27 H 0.026 0.974 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.021 0.979 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.651 0.581 -2.236 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.224 6.224 3 C -0.053 4.053 4 C -0.085 4.085 5 N -0.241 5.241 6 C -0.022 4.022 7 N -0.263 5.263 8 C 0.077 3.923 9 N -0.191 5.191 10 C -0.101 4.101 11 C 0.126 3.874 12 H 0.028 0.972 13 C -0.208 4.208 14 C -0.567 4.567 15 H 0.080 0.920 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.208 1.208 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.140 0.860 25 H 0.222 0.778 26 H 0.232 0.768 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.042 0.959 -1.809 15.181 hybrid contribution 0.629 -0.793 -0.306 1.057 sum -14.413 0.166 -2.115 14.568 Atomic orbital electron populations 1.23485 0.76193 1.06116 1.02618 1.86215 1.23504 1.24089 1.88559 1.20238 0.91750 0.88298 1.04967 1.23635 1.02123 0.85681 0.97027 1.68304 1.11211 1.28589 1.15978 1.25142 0.86566 0.97284 0.93158 1.68728 1.41408 0.98561 1.17606 1.20291 0.88967 0.89827 0.93224 1.59148 1.07853 1.11783 1.40278 1.22365 1.02744 0.96538 0.88481 1.18946 0.79895 0.94635 0.93947 0.97204 1.22170 1.02735 0.98403 0.97503 1.21449 0.91483 0.93174 1.50610 0.91950 1.25727 0.98838 0.99329 0.94699 1.70066 1.09552 1.25227 1.50745 0.85410 0.78435 0.79619 0.77571 1.18887 1.20436 1.20791 0.91341 0.90939 0.86025 0.77825 0.76770 0.95584 0.90372 0.88717 0.95956 0.93551 0.92090 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.84 113.37 1.12 1.27 16 2 O -0.31 -8.73 7.94 -93.82 -0.74 -9.48 16 3 C 0.00 0.03 6.46 22.77 0.15 0.18 16 4 C 0.08 2.13 10.30 84.64 0.87 3.00 16 5 N -0.52 -15.97 10.43 -199.98 -2.09 -18.05 16 6 C 0.27 8.99 12.28 180.90 2.22 11.21 16 7 N -0.54 -22.62 6.66 -197.18 -1.31 -23.94 16 8 C 0.32 13.24 6.03 133.22 0.80 14.05 16 9 N -0.47 -21.85 4.72 -705.69 -3.33 -25.18 16 10 C 0.04 1.76 8.46 127.69 1.08 2.84 16 11 C 0.23 12.39 1.97 44.17 0.09 12.47 16 12 H 0.01 0.61 7.77 -2.38 -0.02 0.59 16 13 C -0.15 -7.69 8.22 71.98 0.59 -7.10 16 14 C -0.53 -29.65 7.88 25.60 0.20 -29.45 16 15 H 0.06 3.43 6.77 -2.91 -0.02 3.41 16 16 C 0.01 0.74 5.30 84.65 0.45 1.19 16 17 N -0.92 -53.85 11.32 21.45 0.24 -53.61 16 18 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H 0.07 0.86 7.72 -2.39 -0.02 0.84 16 23 H 0.07 0.83 7.70 -2.38 -0.02 0.82 16 24 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.21 3.54 6.45 -2.91 -0.02 3.52 16 26 H 0.22 5.78 8.06 -2.91 -0.02 5.76 16 27 H 0.03 1.02 6.51 -2.39 -0.02 1.01 16 28 H 0.08 3.23 6.42 -2.38 -0.02 3.21 16 29 H 0.09 3.23 5.65 -2.39 -0.01 3.22 16 30 H 0.02 1.08 6.48 -2.38 -0.02 1.07 16 31 H 0.05 2.26 5.67 -2.38 -0.01 2.24 16 32 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 33 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -68.40 266.39 3.49 -64.92 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.13 Total: 9.73 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 7.57 Total: 9.66 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -6.49 Total: -120.78 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.74 Total: -9.48 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.40 3.49 -64.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.358 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds