Wall clock time and date at job start Mon Mar 30 2020 03:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99693 * 2 1 4 4 H 1.48494 * 109.47246 * 269.99984 * 3 2 1 5 5 H 1.48497 * 109.47097 * 30.00186 * 3 2 1 6 6 H 1.48505 * 109.47102 * 150.00154 * 3 2 1 7 7 C 1.37873 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99674 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00379 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47140 * 185.20227 * 9 7 2 11 11 H 1.09008 * 109.46870 * 181.14447 * 10 9 7 12 12 C 1.53001 * 109.46870 * 61.14912 * 10 9 7 13 13 C 1.53779 * 113.61114 * 151.87080 * 12 10 9 14 14 C 1.53782 * 87.07957 * 220.01614 * 13 12 10 15 15 C 1.53775 * 87.08242 * 25.43462 * 14 13 12 16 16 C 1.52996 * 109.47090 * 301.14684 * 10 9 7 17 17 H 1.08994 * 110.54069 * 57.38667 * 16 10 9 18 18 C 1.54632 * 110.48470 * 180.02562 * 16 10 9 19 19 C 1.54484 * 101.76234 * 143.47641 * 18 16 10 20 20 N 1.46762 * 105.54862 * 334.53720 * 19 18 16 21 21 C 1.34615 * 111.18402 * 17.06077 * 20 19 18 22 22 O 1.21285 * 124.90943 * 179.57257 * 21 20 19 23 23 H 0.96998 * 120.00302 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47187 * 65.19979 * 9 7 2 25 25 H 1.09002 * 109.47218 * 305.20347 * 9 7 2 26 26 H 1.08998 * 112.84943 * 283.16888 * 12 10 9 27 27 H 1.08997 * 113.61936 * 334.56298 * 13 12 10 28 28 H 1.09006 * 113.61832 * 105.46727 * 13 12 10 29 29 H 1.09000 * 113.61446 * 270.88370 * 14 13 12 30 30 H 1.09003 * 113.61441 * 139.98047 * 14 13 12 31 31 H 1.09002 * 113.61698 * 220.02420 * 15 14 13 32 32 H 1.08999 * 113.61784 * 89.11268 * 15 14 13 33 33 H 1.09000 * 110.96908 * 25.35989 * 18 16 10 34 34 H 1.08995 * 111.00118 * 261.61131 * 18 16 10 35 35 H 1.08999 * 110.24537 * 93.58933 * 19 18 16 36 36 H 1.09006 * 110.24236 * 215.49434 * 19 18 16 37 37 H 0.96996 * 124.34743 * 197.07518 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6304 -0.1315 11 1 5.1115 -2.6323 -0.1106 12 6 3.5359 -3.2248 -1.4550 13 6 4.4679 -4.3084 -2.0224 14 6 4.2037 -3.6983 -3.4091 15 6 3.9040 -2.3761 -2.6835 16 6 3.4878 -3.4696 1.0310 17 1 2.3984 -3.4419 1.0541 18 6 3.9904 -4.9279 0.9213 19 6 4.2184 -5.2948 2.4045 20 7 4.4645 -4.0215 3.0915 21 6 4.0573 -2.9787 2.3438 22 8 4.1361 -1.8146 2.6747 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.7635 0.9334 25 1 3.8752 -0.6009 -0.8391 26 1 2.4871 -3.5203 -1.4267 27 1 5.5022 -4.2113 -1.6926 28 1 4.0800 -5.3209 -1.9097 29 1 3.3378 -4.1244 -3.9158 30 1 5.0889 -3.6571 -4.0439 31 1 3.0606 -1.8285 -3.1043 32 1 4.7841 -1.7506 -2.5342 33 1 4.9230 -4.9778 0.3593 34 1 3.2322 -5.5697 0.4727 35 1 3.3318 -5.7792 2.8138 36 1 5.0843 -5.9497 2.5022 37 1 4.8682 -3.9426 3.9699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260427340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:30 Heat of formation + Delta-G solvation = -51.958086 kcal Electronic energy + Delta-G solvation = -17869.061863 eV Core-core repulsion = 15224.324923 eV Total energy + Delta-G solvation = -2644.736940 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.53529 -39.58055 -37.17503 -35.62925 -33.88111 -31.19604 -28.63929 -27.10841 -26.26132 -24.74860 -22.56249 -22.05848 -20.50586 -20.09928 -18.66608 -18.10530 -17.21035 -16.31334 -16.22983 -15.52406 -15.26468 -15.04707 -14.51290 -14.31317 -14.23272 -14.09800 -13.33078 -13.16227 -13.03003 -12.84186 -12.62503 -12.50562 -12.07846 -11.92930 -11.73738 -11.42722 -11.24901 -11.15630 -10.74737 -10.70743 -10.60108 -10.12774 -9.89405 -8.20100 -6.14413 1.28105 1.32607 1.46659 1.75746 2.40692 2.59086 3.17620 3.64119 3.77852 3.88580 3.95428 4.10332 4.17791 4.25074 4.43066 4.56414 4.74729 4.83324 4.88719 4.97784 5.02142 5.03435 5.17162 5.19380 5.22703 5.24400 5.35003 5.40584 5.48400 5.66352 5.74532 5.79074 5.91224 6.10439 6.19727 6.41212 6.89382 7.46353 7.47886 8.96127 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.011358 C = 0.008011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.157614 B = 2464.635521 C = 3494.223552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.004 3.996 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.477 4.477 8 H 0.049 0.951 9 C -0.022 4.022 10 C -0.037 4.037 11 H 0.059 0.941 12 C -0.086 4.086 13 C -0.120 4.120 14 C -0.133 4.133 15 C -0.144 4.144 16 C -0.110 4.110 17 H 0.086 0.914 18 C -0.120 4.120 19 C 0.101 3.899 20 N -0.731 5.731 21 C 0.508 3.492 22 O -0.575 6.575 23 H 0.259 0.741 24 H 0.019 0.981 25 H 0.006 0.994 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.081 -15.395 -1.035 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.191 4.191 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.516 4.516 8 H 0.067 0.933 9 C -0.059 4.059 10 C -0.055 4.055 11 H 0.078 0.922 12 C -0.105 4.105 13 C -0.157 4.157 14 C -0.170 4.170 15 C -0.181 4.181 16 C -0.131 4.131 17 H 0.104 0.896 18 C -0.158 4.158 19 C -0.022 4.022 20 N -0.387 5.387 21 C 0.295 3.705 22 O -0.454 6.454 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.025 0.975 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.940 -14.710 -0.976 18.971 hybrid contribution -0.309 1.666 0.653 1.816 sum 11.631 -13.044 -0.323 17.479 Atomic orbital electron populations 1.70029 1.07570 1.27126 1.55028 1.25715 0.95334 1.02326 0.95739 0.85991 0.79376 0.80643 0.78649 1.19113 1.21624 1.19196 1.21299 0.91221 0.92680 1.46355 0.93325 1.19758 0.95002 0.95166 0.96020 1.20739 0.97366 0.94155 0.93285 0.92245 1.22304 0.98992 0.96899 0.92303 1.23019 0.99494 0.98188 0.95025 1.22782 1.01775 0.95609 0.96841 1.22879 1.00218 0.97231 0.97790 1.21895 1.01375 0.97495 0.92377 0.89644 1.22821 1.03691 0.92836 0.96410 1.22319 1.03454 0.84610 0.91814 1.46324 1.63332 1.07831 1.21183 1.21511 0.76302 0.84777 0.87864 1.90677 1.57666 1.20389 1.76624 0.93228 0.96283 0.97532 0.91279 0.89307 0.89594 0.90246 0.90429 0.94346 0.91111 0.88315 0.87672 0.90130 0.87002 0.74883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.30 13.96 21.45 0.30 -62.00 16 2 C 0.00 0.24 5.47 84.65 0.46 0.70 16 3 Si 0.93 49.41 27.37 68.60 1.88 51.28 16 4 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.27 -14.30 6.70 99.48 0.67 -13.64 16 7 C -0.48 -27.92 8.38 25.60 0.21 -27.70 16 8 H 0.05 3.00 6.19 -2.91 -0.02 2.98 16 9 C -0.02 -1.12 3.32 29.85 0.10 -1.02 16 10 C -0.04 -1.39 1.52 -10.79 -0.02 -1.41 16 11 H 0.06 2.09 7.83 -2.38 -0.02 2.07 16 12 C -0.09 -2.88 2.26 -10.27 -0.02 -2.91 16 13 C -0.12 -2.71 5.70 31.12 0.18 -2.53 16 14 C -0.13 -3.22 8.08 31.12 0.25 -2.97 16 15 C -0.14 -4.82 6.52 31.12 0.20 -4.62 16 16 C -0.11 -3.84 2.23 -10.80 -0.02 -3.87 16 17 H 0.09 3.59 6.45 -2.39 -0.02 3.57 16 18 C -0.12 -2.49 5.48 31.65 0.17 -2.32 16 19 C 0.10 1.72 7.78 86.83 0.68 2.40 16 20 N -0.73 -18.84 6.26 -459.53 -2.87 -21.72 16 21 C 0.51 19.48 7.83 87.87 0.69 20.17 16 22 O -0.57 -28.70 15.39 -3.04 -0.05 -28.74 16 23 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 24 H 0.02 1.07 5.10 -2.39 -0.01 1.06 16 25 H 0.01 0.32 6.21 -2.39 -0.01 0.31 16 26 H 0.07 2.62 7.61 -2.39 -0.02 2.61 16 27 H 0.09 1.78 7.73 -2.39 -0.02 1.76 16 28 H 0.09 1.54 8.11 -2.38 -0.02 1.52 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 2.36 7.83 -2.39 -0.02 2.35 16 33 H 0.10 1.72 6.60 -2.39 -0.02 1.71 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.41 8.97 8.96 -92.71 -0.83 8.14 16 Total: -1.00 -78.15 284.25 2.33 -75.82 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.19 Total: 11.44 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 2.88 Total: -26.08 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.58 Total: -83.72 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.05 Total: -28.74 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.88 Total: 51.28 kcal Total: -78.15 2.33 -75.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.863 kcal (2) G-P(sol) polarization free energy of solvation -78.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds