Wall clock time and date at job start Mon Mar 30 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48998 * 110.97314 * 2 1 4 4 C 1.54941 * 103.00722 * 200.30177 * 3 2 1 5 5 C 1.54593 * 103.08161 * 37.39534 * 4 3 2 6 6 C 1.47905 * 111.00005 * 242.55358 * 2 1 3 7 7 H 1.09007 * 109.91375 * 26.49968 * 6 2 1 8 8 O 1.42892 * 110.08642 * 265.29410 * 6 2 1 9 9 C 1.36177 * 117.00130 * 148.30127 * 8 6 2 10 10 C 1.40504 * 126.05349 * 4.94373 * 9 8 6 11 11 N 1.30950 * 108.41300 * 179.82203 * 10 9 8 12 12 N 1.40080 * 108.35422 * 0.44084 * 11 10 9 13 13 C 1.37340 * 126.09579 * 179.71869 * 12 11 10 14 14 H 1.08002 * 120.00114 * 179.97438 * 13 12 11 15 15 C 1.38987 * 120.00031 * 0.02562 * 13 12 11 16 16 N 1.31297 * 119.99758 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00166 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47025 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46813 * 119.99948 * 17 15 13 20 20 H 1.48494 * 109.47476 * 240.00294 * 17 15 13 21 21 C 1.35506 * 126.05306 * 185.26234 * 9 8 6 22 22 H 1.08998 * 109.47059 * 182.38890 * 1 2 3 23 23 H 1.08999 * 109.46467 * 302.38653 * 1 2 3 24 24 H 1.08996 * 109.47274 * 62.38510 * 1 2 3 25 25 H 1.09005 * 110.86830 * 81.89652 * 3 2 1 26 26 H 1.09001 * 110.68485 * 318.61847 * 3 2 1 27 27 H 1.09005 * 110.72488 * 278.95026 * 4 3 2 28 28 H 1.08996 * 110.72843 * 155.84906 * 4 3 2 29 29 H 1.08996 * 110.31097 * 96.87199 * 5 4 3 30 30 H 1.09003 * 110.31000 * 218.93933 * 5 4 3 31 31 H 1.08007 * 125.79433 * 0.02562 * 10 9 8 32 32 H 0.96995 * 120.00029 * 179.97438 * 16 15 13 33 33 H 1.08004 * 126.23484 * 0.02596 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0023 1.3913 0.0000 4 6 3.4492 1.2101 -0.5238 5 6 3.2983 0.1040 -1.5932 6 6 1.9991 -0.6364 -1.2254 7 1 1.2758 -0.5419 -2.0355 8 8 2.2777 -2.0164 -0.9805 9 6 2.1254 -2.8732 -2.0279 10 6 1.8141 -2.5154 -3.3505 11 7 1.7547 -3.6071 -4.0712 12 7 2.0151 -4.7015 -3.2365 13 6 2.0386 -6.0212 -3.6162 14 1 2.2517 -6.7891 -2.8873 15 6 1.7893 -6.3683 -4.9387 16 7 1.5317 -5.4346 -5.8251 17 14 1.8221 -8.1631 -5.4553 18 1 2.1343 -9.0117 -4.2773 19 1 0.4953 -8.5451 -6.0021 20 1 2.8620 -8.3596 -6.4970 21 6 2.2412 -4.2224 -1.9778 22 1 -0.3633 -1.0268 0.0428 23 1 -0.3632 0.5505 0.8678 24 1 -0.3633 0.4763 -0.9106 25 1 2.0072 1.8052 1.0084 26 1 1.4257 2.0246 -0.6741 27 1 4.1117 0.8836 0.2779 28 1 3.8154 2.1333 -0.9727 29 1 3.2136 0.5464 -2.5857 30 1 4.1479 -0.5778 -1.5548 31 1 1.6545 -1.5103 -3.7121 32 1 1.3581 -5.6768 -6.7482 33 1 2.4701 -4.8115 -1.1020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260791776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:22 Heat of formation + Delta-G solvation = 59.973015 kcal Electronic energy + Delta-G solvation = -16744.300661 eV Core-core repulsion = 14000.877074 eV Total energy + Delta-G solvation = -2743.423587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77677 -38.76384 -35.99972 -33.32853 -32.04046 -30.25248 -28.56124 -27.11250 -25.42202 -24.80568 -21.44820 -21.04956 -20.19819 -19.38310 -17.82069 -16.23892 -15.70204 -15.47982 -15.12427 -14.14073 -13.92523 -13.74024 -13.55531 -13.11391 -12.89329 -12.68652 -12.23211 -11.96626 -11.67305 -11.34443 -11.23955 -11.10959 -11.01258 -10.85893 -10.48862 -10.43895 -10.26487 -9.27391 -8.80948 -8.35117 -8.11864 -6.71575 -6.54550 -4.21707 2.97109 3.07235 3.13083 3.51627 3.62457 3.87504 4.21186 4.62988 4.72699 4.78390 4.95037 5.03223 5.04891 5.30201 5.48254 5.50764 5.57901 5.70353 5.87696 5.92541 6.01200 6.13703 6.18217 6.33308 6.61149 6.73188 6.85736 7.04628 7.11484 7.34634 7.60193 7.99926 8.56706 8.82467 9.38820 9.62507 10.42369 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.060130 B = 0.005185 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.548893 B = 5398.636822 C = 5474.497402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.524 5.524 3 C 0.041 3.959 4 C -0.122 4.122 5 C -0.147 4.147 6 C 0.251 3.749 7 H 0.051 0.949 8 O -0.297 6.297 9 C -0.066 4.066 10 C -0.110 4.110 11 N -0.245 5.245 12 N -0.142 5.142 13 C -0.319 4.319 14 H 0.118 0.882 15 C 0.045 3.955 16 N -0.776 5.776 17 Si 0.935 3.065 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.075 4.075 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.026 0.974 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.273 0.727 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 9.134 6.706 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.252 5.252 3 C -0.086 4.086 4 C -0.160 4.160 5 C -0.186 4.186 6 C 0.105 3.895 7 H 0.069 0.931 8 O -0.209 6.209 9 C -0.123 4.123 10 C -0.283 4.283 11 N -0.079 5.079 12 N 0.085 4.915 13 C -0.452 4.452 14 H 0.136 0.864 15 C -0.171 4.171 16 N -0.404 5.404 17 Si 0.759 3.241 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.222 4.222 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.045 0.955 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.164 0.836 32 H 0.084 0.916 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.361 8.355 5.991 10.287 hybrid contribution -0.285 0.171 -0.334 0.471 sum 0.077 8.526 5.657 10.232 Atomic orbital electron populations 1.22479 0.87170 1.02860 1.00190 1.63805 1.08271 1.14136 1.38999 1.23230 0.95287 0.88936 1.01137 1.22455 0.96414 0.98363 0.98746 1.22821 0.99103 0.98104 0.98539 1.23036 0.94719 0.82153 0.89638 0.93105 1.85777 1.85406 1.15538 1.34158 1.18194 1.17831 0.89189 0.87071 1.23507 1.14103 0.98494 0.92171 1.78121 1.23864 0.90563 1.15381 1.44496 1.38259 1.05535 1.03162 1.19942 1.50411 0.78989 0.95835 0.86436 1.25623 0.95492 1.00478 0.95493 1.70217 1.34451 1.32819 1.02903 0.85753 0.78453 0.80572 0.79322 1.18621 1.19960 1.19944 1.20943 1.18554 0.92028 0.90631 0.90797 0.91328 0.95506 0.89768 0.93636 0.90548 0.91128 0.90977 0.89589 0.83551 0.91635 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.44 60.07 0.57 0.86 16 2 N -0.52 -8.14 5.45 -235.97 -1.29 -9.43 16 3 C 0.04 0.49 6.59 -1.63 -0.01 0.48 16 4 C -0.12 -1.44 7.05 -24.87 -0.18 -1.62 16 5 C -0.15 -2.21 6.73 -25.37 -0.17 -2.38 16 6 C 0.25 4.46 2.80 -2.75 -0.01 4.45 16 7 H 0.05 0.93 5.93 -51.93 -0.31 0.63 16 8 O -0.30 -6.57 10.04 -20.30 -0.20 -6.77 16 9 C -0.07 -1.63 6.95 -39.70 -0.28 -1.91 16 10 C -0.11 -2.77 10.88 -17.07 -0.19 -2.95 16 11 N -0.24 -7.05 10.41 30.78 0.32 -6.73 16 12 N -0.14 -4.00 3.74 -11.43 -0.04 -4.04 16 13 C -0.32 -8.63 10.25 -14.81 -0.15 -8.78 16 14 H 0.12 2.87 7.83 -52.49 -0.41 2.46 16 15 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 16 N -0.78 -21.68 11.82 55.50 0.66 -21.02 16 17 Si 0.94 19.10 29.55 -169.99 -5.02 14.08 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.07 -1.91 11.49 -16.42 -0.19 -2.10 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.03 0.34 7.96 -51.93 -0.41 -0.07 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.49 8.02 -51.93 -0.42 0.07 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.42 7.97 -51.93 -0.41 1.01 16 31 H 0.15 3.25 7.08 -52.48 -0.37 2.87 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.15 3.42 8.06 -52.48 -0.42 3.00 16 LS Contribution 280.01 15.07 4.22 4.22 Total: -1.00 -31.72 280.01 -6.49 -38.21 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.43 Total: 4.35 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.70 Total: -12.87 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.35 Total: -41.22 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.20 Total: -6.77 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.72 -6.49 -38.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.183 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds