Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 110.99923 * 2 1 4 4 C 1.53033 * 109.52101 * 174.15859 * 3 2 1 5 5 C 1.53122 * 109.28225 * 59.17791 * 4 3 2 6 6 C 1.50694 * 109.52484 * 182.37700 * 5 4 3 7 7 N 1.30750 * 126.28400 * 239.59132 * 6 5 4 8 8 C 1.36363 * 105.51134 * 179.86469 * 7 6 5 9 9 C 1.41735 * 126.58959 * 180.12497 * 8 7 6 10 10 H 1.08001 * 119.99926 * 354.63435 * 9 8 7 11 11 C 1.39973 * 119.99853 * 174.63476 * 9 8 7 12 12 N 1.30745 * 120.00273 * 5.99451 * 11 9 8 13 13 Si 1.86804 * 119.99694 * 185.98966 * 11 9 8 14 14 H 1.48498 * 109.47042 * 94.98614 * 13 11 9 15 15 H 1.48500 * 109.47057 * 214.97954 * 13 11 9 16 16 H 1.48491 * 109.47406 * 334.98412 * 13 11 9 17 17 N 1.31872 * 106.82007 * 0.39596 * 8 7 6 18 18 O 1.21264 * 109.90144 * 359.74886 * 17 8 7 19 19 C 1.53118 * 109.20819 * 302.31421 * 5 4 3 20 20 C 1.46846 * 111.00256 * 235.78789 * 2 1 3 21 21 H 1.09005 * 109.47045 * 60.00339 * 1 2 3 22 22 H 1.09001 * 109.47370 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47870 * 300.00290 * 1 2 3 24 24 H 1.08995 * 109.46294 * 54.14214 * 3 2 1 25 25 H 1.09004 * 109.45940 * 294.16953 * 3 2 1 26 26 H 1.09003 * 109.50354 * 299.23541 * 4 3 2 27 27 H 1.09003 * 109.50325 * 179.12032 * 4 3 2 28 28 H 1.09004 * 109.51694 * 62.24751 * 5 4 3 29 29 H 0.96998 * 120.00115 * 180.02562 * 12 11 9 30 30 H 1.09007 * 109.49845 * 177.62434 * 19 5 4 31 31 H 1.08994 * 109.50622 * 297.73856 * 19 5 4 32 32 H 1.09007 * 109.46226 * 305.85596 * 20 2 1 33 33 H 1.09000 * 109.46287 * 65.82198 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1189 0.5369 -1.0143 6 6 5.6135 0.4476 -0.8438 7 7 6.5155 0.8863 -1.6824 8 6 7.7183 0.5911 -1.1117 9 6 8.9997 0.8751 -1.6467 10 1 9.0902 1.2954 -2.6375 11 6 10.1479 0.6108 -0.8910 12 7 10.0469 -0.0048 0.2580 13 14 11.8245 1.1376 -1.5242 14 1 12.1788 2.4591 -0.9469 15 1 12.8427 0.1336 -1.1239 16 1 11.7848 1.2391 -3.0052 17 7 7.4601 -0.0147 0.0308 18 8 6.2611 -0.1003 0.1909 19 6 3.5195 -0.8721 -1.0213 20 6 1.9953 -0.7708 -1.1337 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8899 24 1 1.5634 1.9257 0.8329 25 1 1.7325 1.8608 -0.9377 26 1 3.7813 0.8568 1.0907 27 1 3.9099 2.3512 0.1311 28 1 3.8887 1.0354 -1.9559 29 1 10.8425 -0.1876 0.7819 30 1 3.9123 -1.4304 -1.8712 31 1 3.7827 -1.3842 -0.0958 32 1 1.5635 -1.7716 -1.1241 33 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260811377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = 50.570991 kcal Electronic energy + Delta-G solvation = -16764.682663 eV Core-core repulsion = 14020.851374 eV Total energy + Delta-G solvation = -2743.831289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.17238 -38.92614 -34.43122 -34.22627 -32.68085 -30.81932 -29.82232 -26.81350 -26.31060 -23.23565 -23.07582 -21.77706 -20.72652 -19.50882 -17.22910 -16.00597 -15.86848 -15.43592 -15.06942 -14.83023 -14.58673 -14.20629 -13.56503 -13.16400 -12.81244 -12.46377 -12.40959 -11.74347 -11.41214 -11.31292 -11.11121 -11.10637 -10.70059 -10.53228 -10.52010 -10.22596 -10.13297 -10.00648 -9.17803 -8.98905 -8.38227 -8.02203 -6.58815 -4.58501 2.93884 3.07076 3.13862 3.19307 3.88125 4.01200 4.10626 4.30359 4.86291 4.89775 5.00936 5.15841 5.30389 5.33735 5.39095 5.49658 5.52515 5.66480 5.72453 5.73792 5.83240 5.96239 6.06795 6.18547 6.36867 6.58320 6.69637 7.01142 7.03531 7.04801 7.30607 7.83049 8.35198 8.58139 8.90125 10.37277 10.51606 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.076146 B = 0.004998 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.625836 B = 5600.552734 C = 5628.085076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.112 4.112 5 C 0.019 3.981 6 C 0.124 3.876 7 N -0.523 5.523 8 C 0.287 3.713 9 C -0.436 4.436 10 H 0.090 0.910 11 C 0.071 3.929 12 N -0.774 5.774 13 Si 0.923 3.077 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.261 1.261 17 N -0.425 5.425 18 O 0.019 5.981 19 C -0.112 4.112 20 C 0.059 3.941 21 H 0.023 0.977 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.277 0.723 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.716 0.492 -0.785 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.068 4.068 4 C -0.150 4.150 5 C -0.002 4.002 6 C -0.098 4.098 7 N -0.263 5.263 8 C 0.035 3.965 9 C -0.477 4.477 10 H 0.109 0.891 11 C -0.150 4.150 12 N -0.402 5.402 13 Si 0.747 3.253 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.185 1.185 17 N -0.153 5.153 18 O -0.022 6.022 19 C -0.150 4.150 20 C -0.069 4.069 21 H 0.041 0.959 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.817 0.051 0.036 13.817 hybrid contribution 0.486 0.646 -1.001 1.286 sum -13.331 0.697 -0.964 13.384 Atomic orbital electron populations 1.22338 0.87497 1.01930 1.00467 1.61917 1.07295 1.14040 1.43703 1.22087 0.95356 0.88866 1.00537 1.21657 0.93612 1.00649 0.99107 1.19446 0.83280 0.97331 1.00107 1.27854 0.97232 0.97456 0.87292 1.72180 0.99587 1.25184 1.29378 1.22454 0.92775 0.93834 0.87417 1.18400 0.86039 1.40488 1.02759 0.89150 1.25829 1.01238 0.93524 0.94435 1.69886 1.31110 1.28815 1.10427 0.86065 0.80309 0.78853 0.80058 1.19573 1.20244 1.18538 1.75591 0.88708 1.29367 1.21623 1.85180 1.15328 1.60728 1.40952 1.21681 0.93598 0.95976 1.03762 1.22112 0.95356 0.98189 0.91209 0.95871 0.91465 0.91436 0.90479 0.94736 0.90018 0.90889 0.88772 0.91246 0.90876 0.90022 0.90483 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.59 60.07 0.58 0.81 16 2 N -0.54 -6.31 4.91 -242.88 -1.19 -7.51 16 3 C 0.06 0.68 5.46 -3.84 -0.02 0.66 16 4 C -0.11 -1.61 5.36 -26.65 -0.14 -1.75 16 5 C 0.02 0.31 2.72 -91.65 -0.25 0.07 16 6 C 0.12 2.86 6.99 -12.92 -0.09 2.77 16 7 N -0.52 -14.04 11.62 -10.83 -0.13 -14.16 16 8 C 0.29 8.61 7.70 -156.98 -1.21 7.40 16 9 C -0.44 -12.79 9.51 -37.60 -0.36 -13.15 16 10 H 0.09 2.52 7.85 -52.49 -0.41 2.11 16 11 C 0.07 1.94 5.49 -17.36 -0.10 1.85 16 12 N -0.77 -22.36 12.01 55.55 0.67 -21.69 16 13 Si 0.92 20.05 29.56 -169.99 -5.03 15.02 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 17 N -0.42 -12.75 10.51 30.27 0.32 -12.43 16 18 O 0.02 0.49 11.28 17.71 0.20 0.69 16 19 C -0.11 -1.61 5.37 -26.58 -0.14 -1.75 16 20 C 0.06 0.68 5.47 -3.77 -0.02 0.66 16 21 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 22 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.28 7.23 8.29 -40.82 -0.34 6.89 16 30 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 278.60 15.07 4.20 4.20 Total: -1.00 -33.23 278.60 -7.33 -40.55 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.61 Total: -2.24 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -1.75 Total: -2.43 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.33 Total: -55.79 kcal Atomic # 8 Polarization: 0.49 SS G_CDS: 0.20 Total: 0.69 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.23 -7.33 -40.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260811377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.123 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds