Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 110.99923 * 2 1 4 4 C 1.53033 * 109.52101 * 174.15859 * 3 2 1 5 5 C 1.53122 * 109.28225 * 59.17791 * 4 3 2 6 6 C 1.50694 * 109.52484 * 182.37700 * 5 4 3 7 7 N 1.30750 * 126.28400 * 239.59132 * 6 5 4 8 8 C 1.36363 * 105.51134 * 179.86469 * 7 6 5 9 9 C 1.41735 * 126.58959 * 180.12497 * 8 7 6 10 10 H 1.08001 * 119.99926 * 354.63435 * 9 8 7 11 11 C 1.39973 * 119.99853 * 174.63476 * 9 8 7 12 12 N 1.30745 * 120.00273 * 5.99451 * 11 9 8 13 13 Si 1.86804 * 119.99694 * 185.98966 * 11 9 8 14 14 H 1.48498 * 109.47042 * 94.98614 * 13 11 9 15 15 H 1.48500 * 109.47057 * 214.97954 * 13 11 9 16 16 H 1.48491 * 109.47406 * 334.98412 * 13 11 9 17 17 N 1.31872 * 106.82007 * 0.39596 * 8 7 6 18 18 O 1.21264 * 109.90144 * 359.74886 * 17 8 7 19 19 C 1.53118 * 109.20819 * 302.31421 * 5 4 3 20 20 C 1.46846 * 111.00256 * 235.78789 * 2 1 3 21 21 H 1.09005 * 109.47045 * 60.00339 * 1 2 3 22 22 H 1.09001 * 109.47370 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47870 * 300.00290 * 1 2 3 24 24 H 1.08995 * 109.46294 * 54.14214 * 3 2 1 25 25 H 1.09004 * 109.45940 * 294.16953 * 3 2 1 26 26 H 1.09003 * 109.50354 * 299.23541 * 4 3 2 27 27 H 1.09003 * 109.50325 * 179.12032 * 4 3 2 28 28 H 1.09004 * 109.51694 * 62.24751 * 5 4 3 29 29 H 0.96998 * 120.00115 * 180.02562 * 12 11 9 30 30 H 1.09007 * 109.49845 * 177.62434 * 19 5 4 31 31 H 1.08994 * 109.50622 * 297.73856 * 19 5 4 32 32 H 1.09007 * 109.46226 * 305.85596 * 20 2 1 33 33 H 1.09000 * 109.46287 * 65.82198 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1189 0.5369 -1.0143 6 6 5.6135 0.4476 -0.8438 7 7 6.5155 0.8863 -1.6824 8 6 7.7183 0.5911 -1.1117 9 6 8.9997 0.8751 -1.6467 10 1 9.0902 1.2954 -2.6375 11 6 10.1479 0.6108 -0.8910 12 7 10.0469 -0.0048 0.2580 13 14 11.8245 1.1376 -1.5242 14 1 12.1788 2.4591 -0.9469 15 1 12.8427 0.1336 -1.1239 16 1 11.7848 1.2391 -3.0052 17 7 7.4601 -0.0147 0.0308 18 8 6.2611 -0.1003 0.1909 19 6 3.5195 -0.8721 -1.0213 20 6 1.9953 -0.7708 -1.1337 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8899 24 1 1.5634 1.9257 0.8329 25 1 1.7325 1.8608 -0.9377 26 1 3.7813 0.8568 1.0907 27 1 3.9099 2.3512 0.1311 28 1 3.8887 1.0354 -1.9559 29 1 10.8425 -0.1876 0.7819 30 1 3.9123 -1.4304 -1.8712 31 1 3.7827 -1.3842 -0.0958 32 1 1.5635 -1.7716 -1.1241 33 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260811377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = 25.425532 kcal Electronic energy + Delta-G solvation = -16765.773052 eV Core-core repulsion = 14020.851374 eV Total energy + Delta-G solvation = -2744.921678 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.28678 -39.97149 -36.44777 -35.72029 -34.58318 -31.86143 -31.69619 -28.67054 -27.72665 -24.45045 -24.12505 -23.90824 -22.40780 -20.80091 -19.09091 -18.09816 -17.78776 -16.86272 -16.40780 -15.98270 -15.93571 -15.45879 -14.97233 -14.69001 -14.18567 -13.38945 -13.35749 -13.28957 -13.17055 -12.93902 -12.61172 -12.37849 -12.23728 -12.12428 -12.06393 -11.90125 -11.64227 -11.54612 -11.13631 -11.09731 -10.12912 -9.21264 -8.66020 -6.81046 0.99316 1.34365 1.36332 1.54720 2.03578 2.19114 2.61176 3.03449 3.18453 3.39048 3.81908 3.82258 4.18179 4.19872 4.39437 4.40143 4.55130 4.61629 4.62489 4.71474 4.78428 4.89913 4.98263 4.98603 5.12431 5.16780 5.17218 5.24827 5.35626 5.75103 6.15259 6.15356 6.20465 6.44172 6.74035 8.32361 8.44032 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.076146 B = 0.004998 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.625836 B = 5600.552734 C = 5628.085076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.562 5.562 3 C 0.067 3.933 4 C -0.107 4.107 5 C 0.019 3.981 6 C 0.149 3.851 7 N -0.551 5.551 8 C 0.257 3.743 9 C -0.472 4.472 10 H 0.093 0.907 11 C 0.023 3.977 12 N -0.813 5.813 13 Si 1.011 2.989 14 H -0.260 1.260 15 H -0.264 1.264 16 H -0.252 1.252 17 N -0.464 5.464 18 O 0.010 5.990 19 C -0.107 4.107 20 C 0.067 3.933 21 H 0.032 0.968 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.287 0.713 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 0.956 -1.403 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.287 5.287 3 C -0.060 4.060 4 C -0.146 4.146 5 C -0.001 4.001 6 C -0.073 4.073 7 N -0.291 5.291 8 C 0.005 3.995 9 C -0.513 4.513 10 H 0.111 0.889 11 C -0.194 4.194 12 N -0.442 5.442 13 Si 0.829 3.171 14 H -0.184 1.184 15 H -0.188 1.188 16 H -0.175 1.175 17 N -0.195 5.195 18 O -0.029 6.029 19 C -0.146 4.146 20 C -0.061 4.061 21 H 0.051 0.949 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.901 0.511 -0.581 14.921 hybrid contribution 0.676 0.479 -0.783 1.140 sum -14.225 0.991 -1.365 14.325 Atomic orbital electron populations 1.22390 0.85430 1.02905 1.01354 1.61894 1.09162 1.13864 1.43829 1.22019 0.92596 0.89468 1.01962 1.21623 0.96161 0.99656 0.97150 1.19872 0.78948 0.99600 1.01728 1.29081 0.99445 0.93790 0.85033 1.72163 0.99413 1.27016 1.30514 1.22969 0.94149 0.94325 0.88011 1.18859 0.87036 1.41816 1.03546 0.88883 1.27017 1.05649 0.92569 0.94192 1.69987 1.33081 1.29298 1.11816 0.84783 0.73780 0.78815 0.79719 1.18448 1.18787 1.17528 1.75557 0.90346 1.31062 1.22487 1.85087 1.14582 1.61407 1.41847 1.21648 0.96153 0.93945 1.02841 1.22045 0.92591 0.99547 0.91877 0.94923 0.90533 0.90562 0.88713 0.93489 0.91564 0.91261 0.87499 0.90316 0.91234 0.91562 0.88696 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.59 127.69 1.22 1.61 16 2 N -0.56 -11.43 4.91 -922.32 -4.53 -15.96 16 3 C 0.07 1.37 5.46 86.32 0.47 1.84 16 4 C -0.11 -2.99 5.36 30.65 0.16 -2.83 16 5 C 0.02 0.62 2.72 -11.46 -0.03 0.59 16 6 C 0.15 7.02 6.99 88.33 0.62 7.64 16 7 N -0.55 -30.48 11.62 -304.63 -3.54 -34.02 16 8 C 0.26 16.00 7.70 134.75 1.04 17.04 16 9 C -0.47 -28.46 9.51 23.55 0.22 -28.24 16 10 H 0.09 5.33 7.85 -2.91 -0.02 5.31 16 11 C 0.02 1.27 5.49 85.28 0.47 1.74 16 12 N -0.81 -47.93 12.01 21.83 0.26 -47.66 16 13 Si 1.01 40.97 29.56 68.60 2.03 43.00 16 14 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 16 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 17 N -0.46 -28.97 10.51 -60.21 -0.63 -29.61 16 18 O 0.01 0.53 11.28 73.45 0.83 1.36 16 19 C -0.11 -2.99 5.37 30.69 0.16 -2.82 16 20 C 0.07 1.37 5.47 86.37 0.47 1.84 16 21 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 22 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 24 H 0.09 1.64 8.12 -2.39 -0.02 1.62 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.29 15.13 8.29 -92.71 -0.77 14.36 16 30 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 1.63 8.09 -2.38 -0.02 1.61 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -74.43 278.60 0.33 -74.10 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.10 Total: 10.38 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 4.81 Total: -1.59 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -8.44 Total: -127.25 kcal Atomic # 8 Polarization: 0.53 SS G_CDS: 0.83 Total: 1.36 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -74.43 0.33 -74.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260811377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.527 kcal (2) G-P(sol) polarization free energy of solvation -74.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds