Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47193 * 2 1 4 4 C 1.48538 * 110.99977 * 52.60132 * 3 2 1 5 5 C 1.54938 * 103.22593 * 159.72113 * 4 3 2 6 6 C 1.54597 * 102.92082 * 322.58898 * 5 4 3 7 7 C 1.47891 * 111.00138 * 169.99993 * 3 2 1 8 8 H 1.08997 * 110.08461 * 333.60369 * 7 3 2 9 9 C 1.50702 * 109.91703 * 94.80338 * 7 3 2 10 10 N 1.30752 * 126.28769 * 224.38345 * 9 7 3 11 11 C 1.36360 * 105.51258 * 180.10513 * 10 9 7 12 12 C 1.41736 * 126.58700 * 179.84816 * 11 10 9 13 13 H 1.07995 * 120.00080 * 359.97438 * 12 11 10 14 14 C 1.39975 * 119.99862 * 179.71357 * 12 11 10 15 15 N 1.30743 * 119.99903 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99785 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46986 * 90.00183 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00200 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00030 * 16 14 12 20 20 N 1.31862 * 106.82329 * 359.58591 * 11 10 9 21 21 O 1.21268 * 109.90137 * 0.25960 * 20 11 10 22 22 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47200 * 299.99831 * 1 2 3 24 24 H 1.09001 * 109.47463 * 60.00078 * 1 2 3 25 25 H 1.09001 * 109.47200 * 240.00169 * 2 1 3 26 26 H 1.08997 * 109.47107 * 119.99607 * 2 1 3 27 27 H 1.08996 * 110.66538 * 41.28900 * 4 3 2 28 28 H 1.09000 * 110.81329 * 278.22624 * 4 3 2 29 29 H 1.09001 * 110.72391 * 204.23002 * 5 4 3 30 30 H 1.09000 * 110.72090 * 80.94440 * 5 4 3 31 31 H 1.08996 * 110.30769 * 263.04013 * 6 5 4 32 32 H 1.09002 * 110.30555 * 140.87687 * 6 5 4 33 33 H 0.97000 * 119.99507 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4030 2.1676 1.1017 5 6 2.3780 3.3586 1.2793 6 6 3.7623 2.7091 1.0512 7 6 3.4783 1.4315 0.2398 8 1 3.7927 0.5546 0.8057 9 6 4.2132 1.4842 -1.0749 10 7 5.2736 0.7904 -1.3970 11 6 5.5833 1.1677 -2.6703 12 6 6.6630 0.6894 -3.4541 13 1 7.3390 -0.0490 -3.0489 14 6 6.8501 1.1702 -4.7553 15 7 6.0284 2.0600 -5.2478 16 14 8.2735 0.5404 -5.7881 17 1 7.8371 -0.6522 -6.5577 18 1 8.7112 1.6033 -6.7282 19 1 9.4039 0.1696 -4.8993 20 7 4.6819 2.0587 -3.0342 21 8 3.8965 2.2447 -2.1292 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.3517 1.5732 2.0138 28 1 0.4117 2.5210 0.8180 29 1 2.3059 3.7692 2.2864 30 1 2.1858 4.1291 0.5326 31 1 4.2235 2.4563 2.0058 32 1 4.4069 3.3815 0.4850 33 1 6.1583 2.3934 -6.1494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260908073.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = 59.776808 kcal Electronic energy + Delta-G solvation = -16983.768005 eV Core-core repulsion = 14240.335910 eV Total energy + Delta-G solvation = -2743.432095 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.09294 -39.01088 -34.27274 -33.49437 -32.89309 -30.86972 -28.74833 -27.97769 -26.35652 -23.38049 -21.85898 -21.69758 -20.48258 -19.90380 -17.31899 -16.10840 -15.83110 -15.66715 -15.27471 -14.56871 -14.32676 -14.04717 -13.28488 -13.00705 -12.80321 -12.39043 -11.69742 -11.53973 -11.38644 -11.25658 -11.17704 -11.06846 -10.88301 -10.79508 -10.54515 -10.32379 -10.10699 -9.99134 -9.16102 -8.98775 -8.32561 -7.98245 -6.54610 -4.54489 2.95456 3.08467 3.15337 3.20704 3.94565 4.05115 4.16235 4.35618 4.74464 4.90164 5.04800 5.21061 5.24091 5.31460 5.41761 5.51806 5.53586 5.70657 5.78778 5.86618 5.91919 6.05993 6.07864 6.19615 6.23378 6.33225 6.74276 6.86455 7.13323 7.15553 7.34291 7.86940 8.38495 8.62350 8.93929 10.42013 10.57954 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043255 B = 0.006036 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.169526 B = 4637.577823 C = 4852.264049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 N -0.509 5.509 4 C 0.038 3.962 5 C -0.123 4.123 6 C -0.122 4.122 7 C 0.172 3.828 8 H 0.083 0.917 9 C 0.134 3.866 10 N -0.526 5.526 11 C 0.287 3.713 12 C -0.436 4.436 13 H 0.089 0.911 14 C 0.070 3.930 15 N -0.775 5.775 16 Si 0.922 3.078 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 N -0.425 5.425 21 O 0.035 5.965 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 -0.257 11.355 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 N -0.234 5.234 4 C -0.090 4.090 5 C -0.161 4.161 6 C -0.161 4.161 7 C 0.061 3.939 8 H 0.101 0.899 9 C -0.089 4.089 10 N -0.268 5.268 11 C 0.035 3.965 12 C -0.477 4.477 13 H 0.108 0.892 14 C -0.151 4.151 15 N -0.404 5.404 16 Si 0.747 3.253 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.186 1.186 20 N -0.151 5.151 21 O -0.007 6.007 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.079 0.208 10.024 12.876 hybrid contribution 0.829 -0.746 0.220 1.137 sum -7.250 -0.538 10.244 12.561 Atomic orbital electron populations 1.21831 0.94762 1.01671 1.02420 1.22270 0.95890 0.89069 1.01268 1.64532 1.02945 1.12371 1.43568 1.23210 0.98920 0.94510 0.92312 1.22512 0.93897 0.97874 1.01785 1.22437 0.98204 0.95893 0.99598 1.20375 0.86901 0.99244 0.87332 0.89914 1.27548 0.94296 0.93205 0.93811 1.72152 1.13978 1.26211 1.14445 1.22420 0.95910 0.91693 0.86513 1.18371 1.09187 1.23406 0.96728 0.89248 1.25823 0.97266 0.94061 0.97911 1.69884 1.32939 1.21927 1.15607 0.86090 0.80953 0.78911 0.79376 1.19537 1.20277 1.18601 1.75607 1.07104 1.25219 1.07176 1.85222 1.45189 1.52353 1.17895 0.92318 0.92700 0.91642 0.90406 0.94631 0.93720 0.89705 0.90918 0.90236 0.90653 0.90213 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.57 37.16 0.36 -1.29 16 2 C 0.04 0.60 5.75 -3.82 -0.02 0.58 16 3 N -0.51 -7.93 5.01 -223.95 -1.12 -9.05 16 4 C 0.04 0.44 5.10 -1.89 -0.01 0.43 16 5 C -0.12 -1.43 7.06 -24.87 -0.18 -1.60 16 6 C -0.12 -1.74 6.56 -25.37 -0.17 -1.91 16 7 C 0.17 2.98 3.01 -67.80 -0.20 2.78 16 8 H 0.08 1.37 7.58 -51.93 -0.39 0.97 16 9 C 0.13 3.19 7.11 -12.92 -0.09 3.09 16 10 N -0.53 -14.29 11.62 -10.83 -0.13 -14.42 16 11 C 0.29 8.69 7.70 -156.99 -1.21 7.48 16 12 C -0.44 -12.89 9.52 -37.60 -0.36 -13.25 16 13 H 0.09 2.51 7.85 -52.49 -0.41 2.10 16 14 C 0.07 1.95 5.50 -17.36 -0.10 1.85 16 15 N -0.77 -22.63 11.98 55.55 0.67 -21.96 16 16 Si 0.92 20.23 29.56 -169.99 -5.02 15.20 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 20 N -0.42 -12.96 10.49 30.27 0.32 -12.64 16 21 O 0.03 0.95 11.28 17.71 0.20 1.15 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.52 6.79 -51.93 -0.35 0.17 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.04 0.45 7.82 -51.93 -0.41 0.04 16 27 H 0.04 0.45 8.00 -51.93 -0.42 0.04 16 28 H 0.08 0.90 7.67 -51.93 -0.40 0.50 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.30 7.68 -51.93 -0.40 0.90 16 33 H 0.28 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 278.65 15.07 4.20 4.20 Total: -1.00 -33.82 278.65 -7.31 -41.13 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.45 Total: -1.76 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.98 Total: -1.84 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.27 Total: -58.07 kcal Atomic # 8 Polarization: 0.95 SS G_CDS: 0.20 Total: 1.15 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.82 -7.31 -41.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908073.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.907 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds