Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47193 * 2 1 4 4 C 1.48538 * 110.99977 * 52.60132 * 3 2 1 5 5 C 1.54938 * 103.22593 * 159.72113 * 4 3 2 6 6 C 1.54597 * 102.92082 * 322.58898 * 5 4 3 7 7 C 1.47891 * 111.00138 * 169.99993 * 3 2 1 8 8 H 1.08997 * 110.08461 * 333.60369 * 7 3 2 9 9 C 1.50702 * 109.91703 * 94.80338 * 7 3 2 10 10 N 1.30752 * 126.28769 * 224.38345 * 9 7 3 11 11 C 1.36360 * 105.51258 * 180.10513 * 10 9 7 12 12 C 1.41736 * 126.58700 * 179.84816 * 11 10 9 13 13 H 1.07995 * 120.00080 * 359.97438 * 12 11 10 14 14 C 1.39975 * 119.99862 * 179.71357 * 12 11 10 15 15 N 1.30743 * 119.99903 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99785 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46986 * 90.00183 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00200 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00030 * 16 14 12 20 20 N 1.31862 * 106.82329 * 359.58591 * 11 10 9 21 21 O 1.21268 * 109.90137 * 0.25960 * 20 11 10 22 22 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47200 * 299.99831 * 1 2 3 24 24 H 1.09001 * 109.47463 * 60.00078 * 1 2 3 25 25 H 1.09001 * 109.47200 * 240.00169 * 2 1 3 26 26 H 1.08997 * 109.47107 * 119.99607 * 2 1 3 27 27 H 1.08996 * 110.66538 * 41.28900 * 4 3 2 28 28 H 1.09000 * 110.81329 * 278.22624 * 4 3 2 29 29 H 1.09001 * 110.72391 * 204.23002 * 5 4 3 30 30 H 1.09000 * 110.72090 * 80.94440 * 5 4 3 31 31 H 1.08996 * 110.30769 * 263.04013 * 6 5 4 32 32 H 1.09002 * 110.30555 * 140.87687 * 6 5 4 33 33 H 0.97000 * 119.99507 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4030 2.1676 1.1017 5 6 2.3780 3.3586 1.2793 6 6 3.7623 2.7091 1.0512 7 6 3.4783 1.4315 0.2398 8 1 3.7927 0.5546 0.8057 9 6 4.2132 1.4842 -1.0749 10 7 5.2736 0.7904 -1.3970 11 6 5.5833 1.1677 -2.6703 12 6 6.6630 0.6894 -3.4541 13 1 7.3390 -0.0490 -3.0489 14 6 6.8501 1.1702 -4.7553 15 7 6.0284 2.0600 -5.2478 16 14 8.2735 0.5404 -5.7881 17 1 7.8371 -0.6522 -6.5577 18 1 8.7112 1.6033 -6.7282 19 1 9.4039 0.1696 -4.8993 20 7 4.6819 2.0587 -3.0342 21 8 3.8965 2.2447 -2.1292 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.3517 1.5732 2.0138 28 1 0.4117 2.5210 0.8180 29 1 2.3059 3.7692 2.2864 30 1 2.1858 4.1291 0.5326 31 1 4.2235 2.4563 2.0058 32 1 4.4069 3.3815 0.4850 33 1 6.1583 2.3934 -6.1494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908073.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = 33.562896 kcal Electronic energy + Delta-G solvation = -16984.904725 eV Core-core repulsion = 14240.335910 eV Total energy + Delta-G solvation = -2744.568816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.23307 -40.17472 -36.41304 -35.14092 -34.41159 -32.65495 -29.99853 -29.31603 -28.55445 -24.61683 -23.85679 -23.30869 -21.64239 -21.46042 -19.16919 -18.06788 -17.77490 -17.07119 -16.85668 -16.24659 -15.61564 -15.27369 -14.95295 -14.42854 -13.91679 -13.46772 -13.23538 -13.10750 -13.04540 -12.72833 -12.51229 -12.44582 -12.26641 -12.14896 -12.06480 -11.95698 -11.78936 -11.60289 -11.17067 -11.12554 -10.12879 -9.47826 -8.64398 -6.80020 1.01057 1.34434 1.35741 1.54101 2.03823 2.19106 2.60442 2.83187 3.21107 3.59870 3.65715 3.86037 4.03844 4.17955 4.31333 4.36487 4.56850 4.57790 4.58115 4.68337 4.88881 4.92887 5.02044 5.07726 5.11305 5.15521 5.21560 5.29297 5.33722 5.72536 5.85306 6.08375 6.15991 6.46177 6.74990 8.34626 8.47157 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043255 B = 0.006036 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.169526 B = 4637.577823 C = 4852.264049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 N -0.535 5.535 4 C 0.041 3.959 5 C -0.115 4.115 6 C -0.120 4.120 7 C 0.169 3.831 8 H 0.094 0.906 9 C 0.158 3.842 10 N -0.554 5.554 11 C 0.257 3.743 12 C -0.472 4.472 13 H 0.093 0.907 14 C 0.021 3.979 15 N -0.814 5.814 16 Si 1.011 2.989 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.252 1.252 20 N -0.465 5.465 21 O 0.020 5.980 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 -0.562 12.866 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 N -0.261 5.261 4 C -0.085 4.085 5 C -0.153 4.153 6 C -0.159 4.159 7 C 0.058 3.942 8 H 0.112 0.888 9 C -0.064 4.064 10 N -0.295 5.295 11 C 0.005 3.995 12 C -0.512 4.512 13 H 0.111 0.889 14 C -0.196 4.196 15 N -0.443 5.443 16 Si 0.829 3.171 17 H -0.183 1.183 18 H -0.188 1.188 19 H -0.175 1.175 20 N -0.195 5.195 21 O -0.019 6.019 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.503 -0.092 11.579 14.366 hybrid contribution 0.851 -0.640 -0.152 1.076 sum -7.652 -0.732 11.427 13.772 Atomic orbital electron populations 1.21782 0.92319 1.02865 1.02843 1.22291 0.97855 0.88226 1.00286 1.64429 1.01724 1.13755 1.46195 1.23345 0.99080 0.94021 0.92038 1.22539 0.91774 0.97419 1.03558 1.22479 0.99751 0.93852 0.99812 1.20732 0.88025 1.01468 0.83979 0.88850 1.28873 0.92949 0.90008 0.94614 1.72126 1.15866 1.27755 1.13745 1.22946 0.96525 0.92177 0.87822 1.18840 1.09719 1.24433 0.98239 0.88914 1.27038 1.00423 0.93578 0.98549 1.69996 1.34982 1.22874 1.16492 0.84791 0.76436 0.78651 0.77174 1.18321 1.18798 1.17535 1.75568 1.08218 1.26673 1.09013 1.85120 1.44953 1.53232 1.18569 0.90815 0.90311 0.93075 0.94173 0.92836 0.90923 0.88264 0.87112 0.91672 0.87513 0.93100 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.57 71.98 0.69 -2.11 16 2 C 0.04 1.10 5.75 86.30 0.50 1.60 16 3 N -0.53 -16.00 5.01 -862.45 -4.32 -20.32 16 4 C 0.04 0.82 5.10 86.65 0.44 1.26 16 5 C -0.12 -2.33 7.06 31.80 0.22 -2.11 16 6 C -0.12 -3.22 6.56 31.47 0.21 -3.02 16 7 C 0.17 5.75 3.01 44.31 0.13 5.89 16 8 H 0.09 2.97 7.58 -2.39 -0.02 2.95 16 9 C 0.16 7.76 7.11 88.33 0.63 8.39 16 10 N -0.55 -31.31 11.62 -304.64 -3.54 -34.85 16 11 C 0.26 16.31 7.70 134.75 1.04 17.35 16 12 C -0.47 -28.86 9.52 23.56 0.22 -28.64 16 13 H 0.09 5.38 7.85 -2.91 -0.02 5.35 16 14 C 0.02 1.18 5.50 85.28 0.47 1.65 16 15 N -0.81 -48.81 11.98 21.83 0.26 -48.55 16 16 Si 1.01 41.56 29.56 68.60 2.03 43.58 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 20 N -0.46 -29.77 10.49 -60.23 -0.63 -30.40 16 21 O 0.02 1.15 11.28 73.43 0.83 1.98 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 1.20 6.79 -2.39 -0.02 1.18 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.23 7.82 -2.39 -0.02 1.21 16 27 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 28 H 0.10 1.73 7.67 -2.39 -0.02 1.71 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.66 7.68 -2.39 -0.02 1.64 16 33 H 0.29 15.36 8.29 -92.71 -0.77 14.59 16 Total: -1.00 -78.03 278.65 0.28 -77.75 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.10 Total: 10.52 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.55 Total: 0.27 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -8.23 Total: -134.12 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.83 Total: 1.98 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -78.03 0.28 -77.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908073.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.317 kcal (2) G-P(sol) polarization free energy of solvation -78.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds