Wall clock time and date at job start Mon Mar 30 2020 03:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47028 * 2 1 4 4 C 1.48674 * 111.10695 * 285.41868 * 3 2 1 5 5 C 1.54384 * 104.67123 * 201.09527 * 4 3 2 6 6 C 1.54264 * 105.06072 * 23.77337 * 5 4 3 7 7 C 1.48559 * 111.00197 * 170.00166 * 3 2 1 8 8 H 1.09003 * 110.40964 * 40.14156 * 7 3 2 9 9 C 1.50699 * 110.41237 * 277.81826 * 7 3 2 10 10 N 1.30746 * 126.28622 * 136.64669 * 9 7 3 11 11 C 1.36357 * 105.51063 * 179.97438 * 10 9 7 12 12 C 1.41744 * 126.59063 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99360 * 5.93888 * 12 11 10 14 14 C 1.39968 * 120.00394 * 185.94224 * 12 11 10 15 15 N 1.30737 * 120.00163 * 184.15893 * 14 12 11 16 16 Si 1.86804 * 119.99854 * 4.42978 * 14 12 11 17 17 H 1.48497 * 109.46899 * 179.72364 * 16 14 12 18 18 H 1.48501 * 109.47357 * 299.72930 * 16 14 12 19 19 H 1.48503 * 109.46767 * 59.72809 * 16 14 12 20 20 N 1.31868 * 106.82759 * 0.22829 * 11 10 9 21 21 O 1.21277 * 109.89751 * 359.60404 * 20 11 10 22 22 H 1.09000 * 109.47387 * 299.99598 * 1 2 3 23 23 H 1.08997 * 109.47478 * 60.00360 * 1 2 3 24 24 H 1.09006 * 109.46776 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47057 * 239.99981 * 2 1 3 26 26 H 1.08997 * 109.47478 * 119.99640 * 2 1 3 27 27 H 1.08996 * 110.44431 * 82.25851 * 4 3 2 28 28 H 1.08997 * 110.40389 * 319.91484 * 4 3 2 29 29 H 1.08992 * 110.32504 * 264.87627 * 5 4 3 30 30 H 1.09001 * 110.32205 * 142.66889 * 5 4 3 31 31 H 1.08994 * 110.32439 * 241.10252 * 6 5 4 32 32 H 1.09003 * 110.40711 * 118.93249 * 6 5 4 33 33 H 0.97002 * 120.00118 * 355.13149 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8504 2.0127 -1.3371 5 6 2.8535 3.1862 -1.3479 6 6 3.9288 2.8040 -0.3099 7 6 3.4848 1.4317 0.2408 8 1 3.9844 0.6263 -0.2976 9 6 3.7783 1.3375 1.7159 10 7 4.7115 0.6118 2.2744 11 6 4.6011 0.8434 3.6136 12 6 5.4009 0.2773 4.6378 13 1 6.2512 -0.3372 4.3813 14 6 5.0887 0.5145 5.9814 15 7 5.8721 0.0607 6.9246 16 14 3.5486 1.4732 6.4272 17 1 3.4428 1.5806 7.9045 18 1 3.6236 2.8333 5.8360 19 1 2.3551 0.7674 5.8955 20 7 3.6036 1.6910 3.7734 21 8 3.1320 1.9817 2.6946 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.8321 2.3820 -1.4582 28 1 2.0914 1.2992 -2.1251 29 1 2.3570 4.1114 -1.0556 30 1 3.3017 3.2920 -2.3359 31 1 3.9600 3.5416 0.4919 32 1 4.9055 2.7224 -0.7868 33 1 6.6304 -0.4999 6.6973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260908083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:38 Heat of formation + Delta-G solvation = 49.893909 kcal Electronic energy + Delta-G solvation = -17106.771138 eV Core-core repulsion = 14362.910488 eV Total energy + Delta-G solvation = -2743.860650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.49976 -39.08475 -34.56736 -33.56329 -33.18287 -31.41059 -28.94600 -28.37488 -26.26901 -23.40196 -22.18569 -21.61497 -20.62738 -20.08603 -18.01600 -16.48789 -16.29684 -15.96071 -15.38844 -14.60740 -14.14094 -13.62263 -13.53476 -13.21322 -12.90058 -12.50001 -12.41490 -11.70517 -11.63296 -11.48812 -11.25967 -11.15256 -11.03348 -10.79064 -10.57625 -10.23654 -10.01044 -9.68072 -9.10064 -8.87053 -8.53155 -8.51667 -7.27678 -4.80579 2.53100 3.36770 3.45125 3.76048 3.81746 3.97169 4.12079 4.33120 4.60127 4.76449 4.92285 5.04439 5.15048 5.21271 5.29180 5.41045 5.49278 5.54680 5.60734 5.80274 5.81441 5.84078 5.95675 6.08216 6.16193 6.26184 6.31792 6.60937 6.84521 6.98538 7.48928 7.60500 8.11758 8.25932 8.71208 10.02021 10.15030 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035861 B = 0.007156 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.608863 B = 3912.107326 C = 4143.123993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 N -0.502 5.502 4 C 0.035 3.965 5 C -0.121 4.121 6 C -0.117 4.117 7 C 0.164 3.836 8 H 0.086 0.914 9 C 0.162 3.838 10 N -0.521 5.521 11 C 0.291 3.709 12 C -0.483 4.483 13 H 0.088 0.912 14 C 0.055 3.945 15 N -0.818 5.818 16 Si 1.094 2.906 17 H -0.299 1.299 18 H -0.263 1.263 19 H -0.279 1.279 20 N -0.511 5.511 21 O 0.036 5.964 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 3.100 -15.782 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 N -0.228 5.228 4 C -0.093 4.093 5 C -0.159 4.159 6 C -0.156 4.156 7 C 0.054 3.946 8 H 0.104 0.896 9 C -0.061 4.061 10 N -0.262 5.262 11 C 0.043 3.957 12 C -0.525 4.525 13 H 0.106 0.894 14 C -0.165 4.165 15 N -0.445 5.445 16 Si 0.922 3.078 17 H -0.227 1.227 18 H -0.189 1.189 19 H -0.205 1.205 20 N -0.249 5.249 21 O 0.002 5.998 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.812 4.010 -13.444 16.567 hybrid contribution 1.522 -1.382 -2.033 2.891 sum -7.290 2.627 -15.477 17.308 Atomic orbital electron populations 1.21697 0.94415 1.01410 1.02468 1.22273 0.96654 0.88727 1.01262 1.65233 1.12252 1.17745 1.27540 1.23143 1.00541 0.96077 0.89540 1.22299 0.96047 0.98776 0.98809 1.22340 0.98789 0.95375 0.99064 1.20721 0.89601 0.99262 0.85059 0.89604 1.27550 0.91286 0.92697 0.94583 1.72202 1.22686 1.24469 1.06865 1.22690 0.92095 0.91928 0.89033 1.19623 1.12336 1.30793 0.89736 0.89361 1.27142 1.02414 0.95448 0.91525 1.70602 1.13180 1.24627 1.36095 0.83018 0.73211 0.78338 0.73210 1.22718 1.18861 1.20537 1.74418 1.21049 1.27990 1.01415 1.85035 1.49559 1.54765 1.10408 0.91606 0.92884 0.92403 0.94375 0.90592 0.89676 0.93608 0.90552 0.91059 0.90116 0.90381 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.03 37.16 0.37 -1.25 16 2 C 0.04 0.53 5.50 -3.82 -0.02 0.51 16 3 N -0.50 -7.25 5.01 -223.40 -1.12 -8.36 16 4 C 0.03 0.37 5.92 -2.12 -0.01 0.35 16 5 C -0.12 -1.22 7.00 -25.34 -0.18 -1.39 16 6 C -0.12 -1.54 6.54 -25.35 -0.17 -1.70 16 7 C 0.16 2.64 2.81 -67.22 -0.19 2.46 16 8 H 0.09 1.31 7.99 -51.93 -0.42 0.90 16 9 C 0.16 3.59 6.86 -12.92 -0.09 3.50 16 10 N -0.52 -13.51 11.62 -10.83 -0.13 -13.63 16 11 C 0.29 8.36 7.44 -156.99 -1.17 7.19 16 12 C -0.48 -14.36 9.95 -37.60 -0.37 -14.73 16 13 H 0.09 2.66 8.05 -52.49 -0.42 2.24 16 14 C 0.06 1.60 5.52 -17.37 -0.10 1.50 16 15 N -0.82 -23.41 13.65 55.55 0.76 -22.65 16 16 Si 1.09 28.37 25.93 -169.99 -4.41 23.96 16 17 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.26 -6.88 6.78 56.52 0.38 -6.50 16 19 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 20 N -0.51 -14.27 7.56 30.27 0.23 -14.04 16 21 O 0.04 0.89 11.28 17.70 0.20 1.09 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.52 7.48 -51.93 -0.39 0.13 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.45 7.77 -51.93 -0.40 0.05 16 26 H 0.08 1.24 7.78 -51.93 -0.40 0.84 16 27 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 28 H 0.05 0.43 7.76 -51.93 -0.40 0.03 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.28 7.79 8.72 -40.82 -0.36 7.44 16 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -32.30 275.58 -6.77 -39.07 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -4.54 Total: -6.02 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.92 Total: -3.56 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.26 Total: -58.69 kcal Atomic # 8 Polarization: 0.89 SS G_CDS: 0.20 Total: 1.09 kcal Atomic # 14 Polarization: 28.37 SS G_CDS: -4.41 Total: 23.96 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.30 -6.77 -39.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.960 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds