Wall clock time and date at job start Mon Mar 30 2020 03:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47028 * 2 1 4 4 C 1.48674 * 111.10695 * 285.41868 * 3 2 1 5 5 C 1.54384 * 104.67123 * 201.09527 * 4 3 2 6 6 C 1.54264 * 105.06072 * 23.77337 * 5 4 3 7 7 C 1.48559 * 111.00197 * 170.00166 * 3 2 1 8 8 H 1.09003 * 110.40964 * 40.14156 * 7 3 2 9 9 C 1.50699 * 110.41237 * 277.81826 * 7 3 2 10 10 N 1.30746 * 126.28622 * 136.64669 * 9 7 3 11 11 C 1.36357 * 105.51063 * 179.97438 * 10 9 7 12 12 C 1.41744 * 126.59063 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99360 * 5.93888 * 12 11 10 14 14 C 1.39968 * 120.00394 * 185.94224 * 12 11 10 15 15 N 1.30737 * 120.00163 * 184.15893 * 14 12 11 16 16 Si 1.86804 * 119.99854 * 4.42978 * 14 12 11 17 17 H 1.48497 * 109.46899 * 179.72364 * 16 14 12 18 18 H 1.48501 * 109.47357 * 299.72930 * 16 14 12 19 19 H 1.48503 * 109.46767 * 59.72809 * 16 14 12 20 20 N 1.31868 * 106.82759 * 0.22829 * 11 10 9 21 21 O 1.21277 * 109.89751 * 359.60404 * 20 11 10 22 22 H 1.09000 * 109.47387 * 299.99598 * 1 2 3 23 23 H 1.08997 * 109.47478 * 60.00360 * 1 2 3 24 24 H 1.09006 * 109.46776 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47057 * 239.99981 * 2 1 3 26 26 H 1.08997 * 109.47478 * 119.99640 * 2 1 3 27 27 H 1.08996 * 110.44431 * 82.25851 * 4 3 2 28 28 H 1.08997 * 110.40389 * 319.91484 * 4 3 2 29 29 H 1.08992 * 110.32504 * 264.87627 * 5 4 3 30 30 H 1.09001 * 110.32205 * 142.66889 * 5 4 3 31 31 H 1.08994 * 110.32439 * 241.10252 * 6 5 4 32 32 H 1.09003 * 110.40711 * 118.93249 * 6 5 4 33 33 H 0.97002 * 120.00118 * 355.13149 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8504 2.0127 -1.3371 5 6 2.8535 3.1862 -1.3479 6 6 3.9288 2.8040 -0.3099 7 6 3.4848 1.4317 0.2408 8 1 3.9844 0.6263 -0.2976 9 6 3.7783 1.3375 1.7159 10 7 4.7115 0.6118 2.2744 11 6 4.6011 0.8434 3.6136 12 6 5.4009 0.2773 4.6378 13 1 6.2512 -0.3372 4.3813 14 6 5.0887 0.5145 5.9814 15 7 5.8721 0.0607 6.9246 16 14 3.5486 1.4732 6.4272 17 1 3.4428 1.5806 7.9045 18 1 3.6236 2.8333 5.8360 19 1 2.3551 0.7674 5.8955 20 7 3.6036 1.6910 3.7734 21 8 3.1320 1.9817 2.6946 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.8321 2.3820 -1.4582 28 1 2.0914 1.2992 -2.1251 29 1 2.3570 4.1114 -1.0556 30 1 3.3017 3.2920 -2.3359 31 1 3.9600 3.5416 0.4919 32 1 4.9055 2.7224 -0.7868 33 1 6.6304 -0.4999 6.6973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:38 Heat of formation + Delta-G solvation = 25.239909 kcal Electronic energy + Delta-G solvation = -17107.840216 eV Core-core repulsion = 14362.910488 eV Total energy + Delta-G solvation = -2744.929727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.58028 -40.15508 -36.70260 -35.39109 -34.47183 -33.21194 -30.09915 -29.59057 -28.44222 -24.66524 -23.75582 -23.40678 -21.79506 -21.54232 -20.00482 -18.37256 -18.19628 -17.16059 -16.91175 -15.70311 -15.65282 -15.31890 -15.16782 -14.76559 -14.44649 -13.88868 -13.45288 -13.27516 -13.10689 -12.91099 -12.66504 -12.42694 -12.25845 -12.11777 -12.05519 -11.87736 -11.81293 -11.44976 -11.23333 -10.91055 -10.59351 -9.60108 -9.53939 -7.07472 0.62611 1.27688 1.37030 1.76181 1.83153 2.16031 2.43266 2.72339 2.95293 3.47124 3.56295 3.79149 3.96032 4.14053 4.15889 4.30523 4.33870 4.51628 4.55583 4.69358 4.79892 4.86868 4.94716 5.00268 5.07258 5.12351 5.29321 5.32206 5.32803 5.41648 5.71938 5.94999 5.96652 6.01123 6.48577 7.86363 8.00462 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035861 B = 0.007156 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.608863 B = 3912.107326 C = 4143.123993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.038 3.962 3 N -0.522 5.522 4 C 0.036 3.964 5 C -0.111 4.111 6 C -0.115 4.115 7 C 0.159 3.841 8 H 0.098 0.902 9 C 0.189 3.811 10 N -0.550 5.550 11 C 0.275 3.725 12 C -0.511 4.511 13 H 0.069 0.931 14 C 0.030 3.970 15 N -0.827 5.827 16 Si 1.128 2.872 17 H -0.275 1.275 18 H -0.269 1.269 19 H -0.286 1.286 20 N -0.524 5.524 21 O 0.031 5.969 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 4.020 -18.295 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 N -0.248 5.248 4 C -0.091 4.091 5 C -0.149 4.149 6 C -0.155 4.155 7 C 0.049 3.951 8 H 0.115 0.885 9 C -0.034 4.034 10 N -0.290 5.290 11 C 0.024 3.976 12 C -0.552 4.552 13 H 0.088 0.912 14 C -0.188 4.188 15 N -0.454 5.454 16 Si 0.953 3.047 17 H -0.202 1.202 18 H -0.195 1.195 19 H -0.213 1.213 20 N -0.262 5.262 21 O -0.003 6.003 22 H 0.064 0.936 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.255 4.918 -15.965 19.602 hybrid contribution 1.946 -1.672 -1.424 2.934 sum -8.309 3.246 -17.389 19.544 Atomic orbital electron populations 1.21656 0.92725 1.02338 1.02594 1.22293 0.98017 0.88370 1.00356 1.65215 1.10495 1.18411 1.30660 1.23293 1.01730 0.96314 0.87728 1.22317 0.94774 0.98618 0.99177 1.22392 1.00996 0.92693 0.99378 1.21104 0.91635 1.01631 0.80777 0.88471 1.28765 0.88649 0.89441 0.96498 1.72178 1.24652 1.26218 1.05935 1.22794 0.92432 0.92286 0.90056 1.19639 1.12729 1.31959 0.90897 0.91241 1.27946 1.03761 0.95773 0.91302 1.70615 1.13515 1.25182 1.36062 0.82588 0.70848 0.77026 0.74251 1.20223 1.19482 1.21278 1.74414 1.20865 1.27906 1.03022 1.84969 1.49689 1.55118 1.10481 0.93566 0.90553 0.91169 0.92190 0.94531 0.88042 0.91510 0.90107 0.87933 0.92295 0.88660 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 10.03 71.98 0.72 -2.05 16 2 C 0.04 0.95 5.50 86.30 0.47 1.42 16 3 N -0.52 -13.76 5.01 -860.71 -4.31 -18.07 16 4 C 0.04 0.60 5.92 86.43 0.51 1.11 16 5 C -0.11 -1.74 7.00 31.49 0.22 -1.52 16 6 C -0.12 -2.74 6.54 31.49 0.21 -2.53 16 7 C 0.16 4.84 2.81 44.32 0.12 4.97 16 8 H 0.10 2.76 7.99 -2.39 -0.02 2.74 16 9 C 0.19 8.34 6.86 88.33 0.61 8.95 16 10 N -0.55 -28.94 11.62 -304.62 -3.54 -32.48 16 11 C 0.28 16.14 7.44 134.75 1.00 17.15 16 12 C -0.51 -31.33 9.95 23.56 0.23 -31.10 16 13 H 0.07 4.38 8.05 -2.91 -0.02 4.36 16 14 C 0.03 1.75 5.52 85.28 0.47 2.22 16 15 N -0.83 -47.88 13.65 21.82 0.30 -47.58 16 16 Si 1.13 57.91 25.93 68.60 1.78 59.69 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.27 -13.95 6.78 99.48 0.67 -13.27 16 19 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 20 N -0.52 -29.58 7.56 -60.20 -0.45 -30.03 16 21 O 0.03 1.57 11.28 73.39 0.83 2.40 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.08 1.20 7.48 -2.39 -0.02 1.19 16 24 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.06 1.23 7.77 -2.39 -0.02 1.21 16 26 H 0.04 1.19 7.78 -2.39 -0.02 1.17 16 27 H 0.10 1.43 7.86 -2.39 -0.02 1.41 16 28 H 0.07 0.88 7.76 -2.39 -0.02 0.87 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.66 7.85 -2.39 -0.02 1.64 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.28 15.92 8.72 -92.71 -0.81 15.11 16 Total: -1.00 -71.17 275.58 0.20 -70.97 By element: Atomic # 1 Polarization: -4.53 SS G_CDS: 1.03 Total: -3.50 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 4.57 Total: -1.39 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -8.01 Total: -128.17 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.83 Total: 2.40 kcal Atomic # 14 Polarization: 57.91 SS G_CDS: 1.78 Total: 59.69 kcal Total: -71.17 0.20 -70.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.210 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds