Wall clock time and date at job start Mon Mar 30 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46846 * 111.00225 * 2 1 4 4 C 1.53034 * 109.52521 * 185.84700 * 3 2 1 5 5 C 1.53124 * 109.27326 * 300.81801 * 4 3 2 6 6 C 1.53117 * 109.16112 * 57.65540 * 5 4 3 7 7 H 1.09002 * 109.50143 * 62.29055 * 6 5 4 8 8 C 1.50703 * 109.53474 * 182.38606 * 6 5 4 9 9 N 1.30452 * 126.07415 * 59.59074 * 8 6 5 10 10 O 1.21276 * 110.68310 * 179.80429 * 9 8 6 11 11 C 1.34751 * 109.53596 * 0.45930 * 10 9 8 12 12 C 1.40339 * 126.79548 * 179.69356 * 11 10 9 13 13 H 1.08002 * 120.00005 * 174.36812 * 12 11 10 14 14 C 1.40457 * 120.00142 * 354.36778 * 12 11 10 15 15 N 1.30512 * 120.00101 * 6.00246 * 14 12 11 16 16 Si 1.86804 * 120.00082 * 186.00389 * 14 12 11 17 17 H 1.48496 * 109.47135 * 94.98245 * 16 14 12 18 18 H 1.48498 * 109.46745 * 214.98294 * 16 14 12 19 19 H 1.48498 * 109.46721 * 334.97866 * 16 14 12 20 20 N 1.33337 * 106.41131 * 359.72195 * 11 10 9 21 21 C 1.46848 * 111.00244 * 124.20993 * 2 1 3 22 22 H 1.08998 * 109.46888 * 295.79290 * 1 2 3 23 23 H 1.09003 * 109.47632 * 55.78683 * 1 2 3 24 24 H 1.08999 * 109.47324 * 175.78977 * 1 2 3 25 25 H 1.09006 * 109.45801 * 305.85476 * 3 2 1 26 26 H 1.08995 * 109.46152 * 65.82117 * 3 2 1 27 27 H 1.08996 * 109.51038 * 60.75374 * 4 3 2 28 28 H 1.08996 * 109.50235 * 180.84249 * 4 3 2 29 29 H 1.09005 * 109.52381 * 297.74818 * 5 4 3 30 30 H 1.09000 * 109.51968 * 177.56212 * 5 4 3 31 31 H 0.97002 * 120.00277 * 180.02562 * 15 14 12 32 32 H 1.09001 * 109.45936 * 54.14676 * 21 2 1 33 33 H 1.08992 * 109.45464 * 294.17207 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1469 5 6 4.1188 0.5369 1.0142 6 6 3.5181 -0.8715 1.0207 7 1 3.7814 -1.3837 0.0952 8 6 4.0597 -1.6449 2.1953 9 7 3.9363 -1.3189 3.4524 10 8 4.4751 -2.1409 4.1629 11 6 5.0254 -3.1052 3.3993 12 6 5.7407 -4.2264 3.8473 13 1 6.0577 -4.9814 3.1431 14 6 6.0445 -4.3666 5.2114 15 7 5.5628 -3.5177 6.0778 16 14 7.1379 -5.7681 5.7856 17 1 8.5410 -5.2923 5.8853 18 1 6.6794 -6.2401 7.1168 19 1 7.0623 -6.8860 4.8110 20 7 4.7563 -2.7829 2.1337 21 6 1.9953 -0.7708 1.1337 22 1 -0.3633 0.4472 0.9253 23 1 -0.3634 0.5778 -0.8498 24 1 -0.3634 -1.0249 -0.0754 25 1 1.5634 1.9257 -0.8330 26 1 1.7325 1.8608 0.9375 27 1 3.7813 0.8567 -1.0907 28 1 3.9098 2.3512 -0.1319 29 1 3.8888 1.0354 1.9559 30 1 5.1998 0.4713 0.8903 31 1 5.7728 -3.6143 7.0199 32 1 1.5635 -1.7715 1.1242 33 1 1.7325 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260930825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:27 Heat of formation + Delta-G solvation = 16.703734 kcal Electronic energy + Delta-G solvation = -16845.725496 eV Core-core repulsion = 14100.425612 eV Total energy + Delta-G solvation = -2745.299884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.06426 -40.07033 -36.08778 -36.07026 -34.35678 -32.84334 -31.17419 -28.50355 -27.71060 -25.23433 -23.83576 -23.65879 -22.33912 -20.79827 -19.38868 -17.85538 -17.41502 -16.98279 -16.73718 -16.00755 -15.60949 -15.35220 -15.10497 -14.66811 -14.23745 -13.68519 -13.64192 -13.32134 -13.22012 -13.09070 -12.75958 -12.50686 -12.11418 -11.97923 -11.94963 -11.75678 -11.64492 -11.53440 -11.21335 -10.97914 -10.27646 -9.39260 -8.97132 -7.10689 0.97780 1.40228 1.53532 1.60998 2.00311 2.14951 2.79993 2.98710 3.27296 3.50854 3.71366 3.78550 4.04894 4.09262 4.26328 4.37119 4.48900 4.50708 4.54694 4.68023 4.74199 4.88722 4.92805 4.97614 4.99420 5.02656 5.15260 5.36383 5.53926 5.86827 5.95335 6.07620 6.10445 6.28782 6.44203 8.05461 8.30666 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057542 B = 0.005350 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.482017 B = 5231.925369 C = 5327.726143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.052 3.948 4 C -0.105 4.105 5 C -0.105 4.105 6 C 0.020 3.980 7 H 0.092 0.908 8 C 0.175 3.825 9 N -0.492 5.492 10 O 0.010 5.990 11 C 0.269 3.731 12 C -0.435 4.435 13 H 0.121 0.879 14 C 0.029 3.971 15 N -0.796 5.796 16 Si 1.023 2.977 17 H -0.255 1.255 18 H -0.258 1.258 19 H -0.247 1.247 20 N -0.641 5.641 21 C 0.083 3.917 22 H 0.023 0.977 23 H 0.095 0.905 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.028 0.972 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.306 0.694 32 H 0.060 0.940 33 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 5.090 -6.787 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.075 4.075 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.001 4.001 7 H 0.110 0.890 8 C -0.100 4.100 9 N -0.226 5.226 10 O -0.032 6.032 11 C 0.081 3.919 12 C -0.472 4.472 13 H 0.139 0.861 14 C -0.193 4.193 15 N -0.423 5.423 16 Si 0.839 3.161 17 H -0.179 1.179 18 H -0.181 1.181 19 H -0.170 1.170 20 N -0.386 5.386 21 C -0.046 4.046 22 H 0.041 0.959 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.124 0.876 26 H 0.046 0.954 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.199 5.539 -7.130 9.957 hybrid contribution 0.165 -0.331 1.528 1.572 sum -4.035 5.207 -5.602 8.648 Atomic orbital electron populations 1.22432 0.85618 1.02875 1.01347 1.61927 1.09061 1.14494 1.41710 1.22253 0.95628 0.88330 1.01337 1.21574 0.94404 1.00731 0.97524 1.21549 0.99760 0.93282 0.99803 1.19379 0.94498 0.94731 0.91494 0.89005 1.25642 0.97533 0.93050 0.93813 1.74203 1.25773 1.18066 1.04602 1.85469 1.55412 1.28389 1.33879 1.24853 0.91951 0.91707 0.83402 1.19139 1.30038 1.02739 0.95299 0.86092 1.27409 0.96241 1.00636 0.94993 1.69702 1.33389 1.33820 1.05417 0.84592 0.77097 0.75728 0.78682 1.17931 1.18147 1.17012 1.72248 1.29305 1.17179 1.19893 1.21758 0.93096 0.97980 0.91799 0.95850 0.88681 0.91401 0.87618 0.95363 0.90249 0.88712 0.93296 0.92566 0.88265 0.92161 0.95982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.59 127.69 1.22 1.78 16 2 N -0.55 -15.36 4.91 -922.62 -4.53 -19.89 16 3 C 0.05 1.22 5.46 86.32 0.47 1.69 16 4 C -0.10 -2.57 6.09 30.65 0.19 -2.38 16 5 C -0.11 -3.64 5.27 30.67 0.16 -3.48 16 6 C 0.02 0.80 2.82 -11.49 -0.03 0.76 16 7 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 8 C 0.17 9.23 6.69 138.61 0.93 10.16 16 9 N -0.49 -28.19 12.15 -56.63 -0.69 -28.88 16 10 O 0.01 0.61 9.76 64.24 0.63 1.24 16 11 C 0.27 16.17 7.81 85.06 0.66 16.83 16 12 C -0.44 -23.69 9.47 23.32 0.22 -23.47 16 13 H 0.12 6.17 7.86 -2.91 -0.02 6.14 16 14 C 0.03 1.41 5.50 85.43 0.47 1.88 16 15 N -0.80 -41.23 12.09 21.91 0.26 -40.97 16 16 Si 1.02 35.01 29.57 68.60 2.03 37.04 16 17 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 18 H -0.26 -8.18 7.11 99.48 0.71 -7.47 16 19 H -0.25 -8.07 7.11 99.48 0.71 -7.37 16 20 N -0.64 -37.23 11.61 -305.22 -3.54 -40.78 16 21 C 0.08 3.02 4.73 86.32 0.41 3.43 16 22 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.11 1.85 8.09 -2.38 -0.02 1.83 16 26 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.31 13.76 8.29 -92.71 -0.77 13.00 16 32 H 0.06 2.31 8.12 -2.39 -0.02 2.29 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.97 278.58 -0.04 -68.01 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.10 Total: 17.03 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 4.70 Total: 7.20 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -8.50 Total: -130.52 kcal Atomic # 8 Polarization: 0.61 SS G_CDS: 0.63 Total: 1.24 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Total: -67.97 -0.04 -68.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260930825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.712 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds