Wall clock time and date at job start Mon Mar 30 2020 03:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47447 * 111.00085 * 2 1 4 4 C 1.54316 * 107.23487 * 123.25322 * 3 2 1 5 5 C 1.55140 * 103.01619 * 22.28532 * 4 3 2 6 6 C 1.47848 * 110.99847 * 120.84163 * 2 1 3 7 7 H 1.08999 * 110.37365 * 332.57424 * 6 2 1 8 8 C 1.50693 * 110.37220 * 94.81026 * 6 2 1 9 9 N 1.29948 * 126.29045 * 43.51697 * 8 6 2 10 10 O 1.21297 * 110.25402 * 179.97438 * 9 8 6 11 11 C 1.33644 * 109.80913 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.54815 * 179.73250 * 11 10 9 13 13 C 1.50703 * 109.47165 * 270.02565 * 12 11 10 14 14 H 1.07998 * 120.00105 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99947 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00138 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99930 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47356 * 60.00193 * 17 15 13 19 19 H 1.48501 * 109.47312 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47429 * 299.99632 * 17 15 13 21 21 N 1.31126 * 106.89983 * 0.02562 * 11 10 9 22 22 H 1.09004 * 109.47215 * 299.15938 * 1 2 3 23 23 H 1.09003 * 109.47397 * 59.15799 * 1 2 3 24 24 H 1.09005 * 109.47368 * 179.15525 * 1 2 3 25 25 H 1.08996 * 109.89115 * 242.66699 * 3 2 1 26 26 H 1.09002 * 109.88375 * 3.69079 * 3 2 1 27 27 H 1.09000 * 110.70335 * 140.66530 * 4 3 2 28 28 H 1.09003 * 110.70918 * 263.73147 * 4 3 2 29 29 H 1.09003 * 110.98982 * 206.24918 * 5 4 3 30 30 H 1.09005 * 110.99123 * 82.43656 * 5 4 3 31 31 H 1.08999 * 109.47336 * 30.02546 * 12 11 10 32 32 H 1.09003 * 109.47254 * 150.02825 * 12 11 10 33 33 H 0.97006 * 120.00150 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3046 0.0445 1.5439 6 6 1.9988 -0.7076 1.1851 7 1 1.2880 -0.6518 2.0096 8 6 2.2974 -2.1456 0.8475 9 7 2.8862 -2.5769 -0.2276 10 8 2.9780 -3.7861 -0.1998 11 6 2.4396 -4.2553 0.9298 12 6 2.3460 -5.7004 1.3467 13 6 1.0534 -6.2867 0.8403 14 1 0.3683 -5.6743 0.2730 15 6 0.7454 -7.6051 1.1014 16 7 1.5794 -8.3508 1.7927 17 14 -0.8565 -8.3320 0.4731 18 1 -0.8937 -8.2415 -1.0087 19 1 -0.9494 -9.7557 0.8850 20 1 -2.0005 -7.5765 1.0439 21 7 2.0025 -3.2184 1.6031 22 1 -0.3634 0.5007 0.8974 23 1 -0.3634 0.5269 -0.8823 24 1 -0.3634 -1.0276 -0.0152 25 1 2.5696 1.5541 -0.9105 26 1 1.1753 2.0892 0.0660 27 1 3.8000 2.1034 0.9905 28 1 2.3751 1.9575 2.0686 29 1 3.5494 -0.0795 2.5988 30 1 4.1301 -0.2832 0.9119 31 1 3.1855 -6.2548 0.9270 32 1 2.3739 -5.7674 2.4343 33 1 1.3628 -9.2784 1.9760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260936441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:11 Heat of formation + Delta-G solvation = 64.621956 kcal Electronic energy + Delta-G solvation = -16645.011670 eV Core-core repulsion = 13901.789677 eV Total energy + Delta-G solvation = -2743.221994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.64990 -39.14630 -34.98332 -33.73359 -32.19320 -31.88963 -29.22612 -28.22546 -25.75462 -23.98282 -23.25635 -21.90513 -21.20846 -19.53215 -17.34660 -16.93446 -16.23637 -15.97225 -15.55594 -14.76345 -14.33108 -13.71655 -13.51497 -13.16841 -12.78566 -12.44555 -12.27261 -11.91421 -11.79909 -11.55810 -11.29366 -11.25037 -11.03948 -10.87521 -10.74116 -10.57028 -10.23652 -10.03271 -9.79549 -8.83482 -8.58769 -8.45481 -6.22445 -4.27840 2.08296 2.98955 3.27705 3.31237 3.35547 3.73147 3.93105 4.28952 4.35295 4.54587 4.67387 4.79910 4.95977 5.14948 5.21904 5.30857 5.35932 5.41697 5.55632 5.64087 5.76803 5.85383 5.92030 6.04293 6.15456 6.62607 6.76033 6.84603 6.97322 7.16238 7.24716 7.71092 7.95616 8.72178 9.09046 9.36717 10.87960 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.042206 B = 0.005501 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.251293 B = 5088.938700 C = 5445.166845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.526 5.526 3 C 0.046 3.954 4 C -0.140 4.140 5 C -0.118 4.118 6 C 0.169 3.831 7 H 0.083 0.917 8 C 0.166 3.834 9 N -0.382 5.382 10 O 0.059 5.941 11 C 0.233 3.767 12 C 0.102 3.898 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.906 3.094 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.275 1.275 21 N -0.509 5.509 22 H 0.029 0.971 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 16.121 -0.559 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.251 5.251 3 C -0.082 4.082 4 C -0.178 4.178 5 C -0.157 4.157 6 C 0.059 3.941 7 H 0.101 0.899 8 C -0.108 4.108 9 N -0.093 5.093 10 O 0.003 5.997 11 C 0.015 3.985 12 C 0.063 3.937 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.733 3.267 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.200 1.200 21 N -0.244 5.244 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.409 16.411 -1.240 16.518 hybrid contribution -1.251 -0.263 0.395 1.338 sum 0.159 16.148 -0.845 16.171 Atomic orbital electron populations 1.22548 0.86957 1.02641 1.00462 1.63169 1.08296 1.13900 1.39718 1.22815 0.97963 0.88679 0.98734 1.22787 1.00159 0.96790 0.98102 1.22734 0.96681 0.93982 1.02310 1.20505 0.97060 0.84958 0.91572 0.89893 1.25226 0.99276 0.97328 0.88994 1.74518 1.21406 0.91522 1.21878 1.85294 1.59689 1.15518 1.39175 1.30079 0.87373 1.00417 0.80656 1.18170 0.99880 0.76608 0.99034 1.20766 1.03129 0.96161 1.36146 0.92166 1.24916 0.97507 0.96553 0.94693 1.69916 1.36146 1.08149 1.38411 0.86421 0.82942 0.77959 0.79413 1.19901 1.20933 1.19999 1.71906 1.24559 0.97155 1.30758 0.95231 0.91105 0.91244 0.90238 0.92416 0.90297 0.91168 0.90023 0.90062 0.92454 0.91456 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.12 60.06 0.55 0.83 16 2 N -0.53 -7.60 5.08 -232.98 -1.18 -8.78 16 3 C 0.05 0.49 6.90 -2.83 -0.02 0.48 16 4 C -0.14 -1.34 6.94 -24.91 -0.17 -1.52 16 5 C -0.12 -1.49 6.48 -24.59 -0.16 -1.65 16 6 C 0.17 2.64 2.99 -67.34 -0.20 2.44 16 7 H 0.08 1.26 7.77 -51.93 -0.40 0.85 16 8 C 0.17 3.33 7.12 -156.37 -1.11 2.22 16 9 N -0.38 -8.19 12.16 30.90 0.38 -7.81 16 10 O 0.06 1.33 11.31 18.10 0.20 1.54 16 11 C 0.23 5.42 7.70 -13.06 -0.10 5.32 16 12 C 0.10 2.54 5.60 -29.03 -0.16 2.38 16 13 C -0.52 -14.27 9.09 -34.44 -0.31 -14.58 16 14 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 17 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 N -0.51 -11.48 11.55 -9.87 -0.11 -11.59 16 22 H 0.03 0.33 8.09 -51.93 -0.42 -0.09 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.52 7.58 -51.93 -0.39 0.13 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 284.33 15.07 4.28 4.28 Total: -1.00 -29.48 284.33 -7.07 -36.55 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -4.56 Total: -3.60 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.79 Total: -2.38 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.19 Total: -52.32 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.48 -7.07 -36.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260936441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.169 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds