Wall clock time and date at job start Mon Mar 30 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47447 * 111.00085 * 2 1 4 4 C 1.54316 * 107.23487 * 123.25322 * 3 2 1 5 5 C 1.55140 * 103.01619 * 22.28532 * 4 3 2 6 6 C 1.47848 * 110.99847 * 120.84163 * 2 1 3 7 7 H 1.08999 * 110.37365 * 332.57424 * 6 2 1 8 8 C 1.50693 * 110.37220 * 94.81026 * 6 2 1 9 9 N 1.29948 * 126.29045 * 43.51697 * 8 6 2 10 10 O 1.21297 * 110.25402 * 179.97438 * 9 8 6 11 11 C 1.33644 * 109.80913 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.54815 * 179.73250 * 11 10 9 13 13 C 1.50703 * 109.47165 * 270.02565 * 12 11 10 14 14 H 1.07998 * 120.00105 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99947 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00138 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99930 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47356 * 60.00193 * 17 15 13 19 19 H 1.48501 * 109.47312 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47429 * 299.99632 * 17 15 13 21 21 N 1.31126 * 106.89983 * 0.02562 * 11 10 9 22 22 H 1.09004 * 109.47215 * 299.15938 * 1 2 3 23 23 H 1.09003 * 109.47397 * 59.15799 * 1 2 3 24 24 H 1.09005 * 109.47368 * 179.15525 * 1 2 3 25 25 H 1.08996 * 109.89115 * 242.66699 * 3 2 1 26 26 H 1.09002 * 109.88375 * 3.69079 * 3 2 1 27 27 H 1.09000 * 110.70335 * 140.66530 * 4 3 2 28 28 H 1.09003 * 110.70918 * 263.73147 * 4 3 2 29 29 H 1.09003 * 110.98982 * 206.24918 * 5 4 3 30 30 H 1.09005 * 110.99123 * 82.43656 * 5 4 3 31 31 H 1.08999 * 109.47336 * 30.02546 * 12 11 10 32 32 H 1.09003 * 109.47254 * 150.02825 * 12 11 10 33 33 H 0.97006 * 120.00150 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3046 0.0445 1.5439 6 6 1.9988 -0.7076 1.1851 7 1 1.2880 -0.6518 2.0096 8 6 2.2974 -2.1456 0.8475 9 7 2.8862 -2.5769 -0.2276 10 8 2.9780 -3.7861 -0.1998 11 6 2.4396 -4.2553 0.9298 12 6 2.3460 -5.7004 1.3467 13 6 1.0534 -6.2867 0.8403 14 1 0.3683 -5.6743 0.2730 15 6 0.7454 -7.6051 1.1014 16 7 1.5794 -8.3508 1.7927 17 14 -0.8565 -8.3320 0.4731 18 1 -0.8937 -8.2415 -1.0087 19 1 -0.9494 -9.7557 0.8850 20 1 -2.0005 -7.5765 1.0439 21 7 2.0025 -3.2184 1.6031 22 1 -0.3634 0.5007 0.8974 23 1 -0.3634 0.5269 -0.8823 24 1 -0.3634 -1.0276 -0.0152 25 1 2.5696 1.5541 -0.9105 26 1 1.1753 2.0892 0.0660 27 1 3.8000 2.1034 0.9905 28 1 2.3751 1.9575 2.0686 29 1 3.5494 -0.0795 2.5988 30 1 4.1301 -0.2832 0.9119 31 1 3.1855 -6.2548 0.9270 32 1 2.3739 -5.7674 2.4343 33 1 1.3628 -9.2784 1.9760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260936441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:10 Heat of formation + Delta-G solvation = 43.555759 kcal Electronic energy + Delta-G solvation = -16645.925169 eV Core-core repulsion = 13901.789677 eV Total energy + Delta-G solvation = -2744.135493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.37947 -40.17882 -36.72205 -35.68471 -33.76871 -33.10074 -30.65176 -29.92219 -26.75253 -25.99814 -24.74149 -23.52123 -22.09810 -20.94960 -19.19953 -18.48577 -18.22199 -17.11366 -16.77825 -16.60359 -15.45884 -15.17628 -14.69043 -14.45403 -14.34832 -14.10079 -13.72723 -13.21135 -13.12719 -13.01200 -12.81923 -12.60674 -12.51741 -12.19652 -12.15864 -12.13045 -11.87961 -11.72266 -11.63794 -10.67327 -10.63545 -9.47023 -8.31022 -6.44563 0.31146 1.31539 1.44269 1.45098 1.54098 2.07073 2.39442 2.51638 3.03197 3.04486 3.35973 3.61123 3.69260 3.91683 4.15445 4.31579 4.37901 4.44329 4.51908 4.70766 4.83026 4.85075 4.89065 4.91075 4.99378 5.02716 5.10071 5.24842 5.27392 5.58200 5.78539 5.88184 6.00253 6.59229 7.24035 7.33292 8.79661 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.042206 B = 0.005501 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.251293 B = 5088.938700 C = 5445.166845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.044 3.956 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.163 3.837 7 H 0.088 0.912 8 C 0.176 3.824 9 N -0.392 5.392 10 O 0.047 5.953 11 C 0.225 3.775 12 C 0.111 3.889 13 C -0.546 4.546 14 H 0.050 0.950 15 C 0.023 3.977 16 N -0.915 5.915 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.271 1.271 21 N -0.522 5.522 22 H 0.049 0.951 23 H 0.088 0.912 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 17.867 -0.576 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.083 4.083 4 C -0.164 4.164 5 C -0.156 4.156 6 C 0.053 3.947 7 H 0.106 0.894 8 C -0.098 4.098 9 N -0.106 5.106 10 O -0.005 6.005 11 C 0.007 3.993 12 C 0.072 3.928 13 C -0.584 4.584 14 H 0.069 0.931 15 C -0.178 4.178 16 N -0.553 5.553 17 Si 0.793 3.207 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.197 1.197 21 N -0.257 5.257 22 H 0.067 0.933 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.641 18.155 -1.271 18.211 hybrid contribution -0.985 -0.741 0.397 1.294 sum -0.343 17.415 -0.874 17.440 Atomic orbital electron populations 1.22536 0.86319 1.01209 1.02307 1.63075 1.09161 1.16144 1.39255 1.22918 0.98943 0.87014 0.99402 1.22776 1.00879 0.94690 0.98099 1.22751 0.94491 0.95727 1.02600 1.20776 0.98970 0.82734 0.92264 0.89419 1.26118 0.97200 0.98848 0.87684 1.74503 1.22535 0.90901 1.22650 1.85277 1.60011 1.16231 1.38969 1.29715 0.88231 1.00080 0.81314 1.17886 0.99071 0.77702 0.98123 1.20979 1.03933 0.96786 1.36720 0.93134 1.25724 1.00766 0.96690 0.94589 1.69997 1.37752 1.08615 1.38945 0.85429 0.78728 0.77540 0.78968 1.19350 1.19743 1.19653 1.71907 1.24690 0.97755 1.31337 0.93274 0.89307 0.94300 0.90278 0.90081 0.88278 0.89222 0.88924 0.91753 0.92925 0.92664 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.12 127.69 1.17 1.75 16 2 N -0.55 -14.95 5.08 -891.00 -4.53 -19.48 16 3 C 0.04 0.81 6.90 86.64 0.60 1.41 16 4 C -0.13 -1.97 6.94 31.77 0.22 -1.75 16 5 C -0.12 -2.71 6.48 31.98 0.21 -2.51 16 6 C 0.16 4.88 2.99 44.64 0.13 5.01 16 7 H 0.09 2.52 7.77 -2.39 -0.02 2.51 16 8 C 0.18 7.08 7.12 138.46 0.99 8.06 16 9 N -0.39 -16.99 12.16 -60.32 -0.73 -17.72 16 10 O 0.05 2.17 11.31 74.83 0.85 3.02 16 11 C 0.23 10.77 7.70 88.38 0.68 11.45 16 12 C 0.11 5.72 5.60 29.10 0.16 5.88 16 13 C -0.55 -30.32 9.09 25.60 0.23 -30.08 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 15 C 0.02 1.26 5.46 84.66 0.46 1.73 16 16 N -0.92 -51.47 13.29 21.45 0.28 -51.18 16 17 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 N -0.52 -23.84 11.55 -303.20 -3.50 -27.34 16 22 H 0.05 0.97 8.09 -2.39 -0.02 0.95 16 23 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 1.14 7.58 -2.39 -0.02 1.13 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.71 8.05 -2.38 -0.02 1.70 16 31 H 0.05 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -63.17 284.33 0.34 -62.83 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.10 Total: 4.20 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 4.85 Total: 0.95 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -8.48 Total: -115.72 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.85 Total: 3.02 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -63.17 0.34 -62.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260936441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.383 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds