Wall clock time and date at job start Mon Mar 30 2020 03:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00168 * 2 1 4 4 C 1.53000 * 109.47457 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47377 * 64.99665 * 4 3 2 6 6 C 1.36932 * 119.99818 * 89.90788 * 5 4 3 7 7 H 1.07997 * 119.99994 * 213.25272 * 6 5 4 8 8 C 1.38806 * 119.99898 * 32.97881 * 6 5 4 9 9 N 1.31618 * 119.99982 * 207.14478 * 8 6 5 10 10 Si 1.86805 * 120.00244 * 27.14758 * 8 6 5 11 11 H 1.48499 * 109.47020 * 4.52776 * 10 8 6 12 12 H 1.48499 * 109.47309 * 124.52737 * 10 8 6 13 13 H 1.48495 * 109.47159 * 244.52935 * 10 8 6 14 14 C 1.46503 * 119.99936 * 269.91148 * 5 4 3 15 15 C 1.50700 * 109.47056 * 269.99692 * 14 5 4 16 16 N 1.31790 * 119.12547 * 269.73210 * 15 14 5 17 17 C 1.32334 * 120.81856 * 179.75717 * 16 15 14 18 18 C 1.38591 * 119.10492 * 0.51152 * 17 16 15 19 19 C 1.38597 * 118.40117 * 359.73963 * 18 17 16 20 20 N 1.31802 * 119.12206 * 89.99977 * 15 14 5 21 21 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47183 * 300.00515 * 1 2 3 23 23 H 1.08996 * 109.47133 * 59.99877 * 1 2 3 24 24 H 1.08999 * 109.47344 * 59.99986 * 3 2 1 25 25 H 1.09004 * 109.47260 * 300.00041 * 3 2 1 26 26 H 1.09003 * 109.46592 * 304.99359 * 4 3 2 27 27 H 1.09002 * 109.47354 * 185.00205 * 4 3 2 28 28 H 0.96997 * 120.00300 * 0.02562 * 9 8 6 29 29 H 1.09002 * 109.47310 * 29.99677 * 14 5 4 30 30 H 1.09000 * 109.47002 * 149.99659 * 14 5 4 31 31 H 1.08004 * 120.44854 * 180.22899 * 17 16 15 32 32 H 1.08006 * 120.80447 * 179.77252 * 18 17 16 33 33 H 1.07996 * 120.44977 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2643 1.3459 -2.3394 7 1 4.0665 0.9794 -3.3359 8 6 4.8057 2.6114 -2.1601 9 7 4.6020 3.5481 -3.0620 10 14 5.8235 2.9849 -0.6389 11 1 5.9950 1.7442 0.1588 12 1 7.1554 3.4984 -1.0482 13 1 5.1290 4.0091 0.1820 14 6 4.1072 -0.8920 -1.3420 15 6 5.5038 -1.2956 -0.9449 16 7 6.4368 -1.3747 -1.8723 17 6 7.6752 -1.7211 -1.5603 18 6 7.9815 -2.0125 -0.2404 19 6 6.9725 -1.9232 0.7056 20 7 5.7584 -1.5653 0.3199 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8514 0.5683 0.8410 27 1 3.9785 2.1765 0.0890 28 1 4.0733 3.3543 -3.8517 29 1 3.3883 -1.3635 -0.6719 30 1 3.9137 -1.2121 -2.3658 31 1 8.4361 -1.7805 -2.3246 32 1 8.9824 -2.3018 0.0443 33 1 7.1745 -2.1425 1.7436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316540030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:29 Heat of formation + Delta-G solvation = 7.948603 kcal Electronic energy + Delta-G solvation = -17178.475044 eV Core-core repulsion = 14432.795509 eV Total energy + Delta-G solvation = -2745.679535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.74739 -39.07815 -37.35757 -34.49840 -34.16379 -33.04743 -30.70080 -28.26066 -27.04454 -25.32426 -24.89179 -23.84187 -22.17896 -19.49224 -18.32660 -17.82546 -17.43312 -17.05944 -16.40299 -16.20690 -15.98957 -15.89074 -15.23387 -14.99372 -14.56467 -14.30679 -13.89153 -13.44606 -13.09806 -12.80369 -12.53349 -12.37593 -11.87399 -11.79651 -11.68447 -11.64938 -11.37775 -10.67022 -10.46789 -10.34898 -10.02902 -9.15659 -8.53782 -5.56696 0.09103 0.34709 1.31487 1.43000 1.60721 2.42656 2.83604 2.96215 3.03093 3.26965 3.45891 3.54697 3.86340 4.27318 4.33471 4.35616 4.38514 4.44414 4.58010 4.60938 4.62551 4.72504 4.72860 4.86261 4.96515 5.03554 5.06741 5.62336 5.84737 6.24823 6.28285 6.36335 6.88085 7.37543 7.49358 8.06187 8.78653 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.017815 B = 0.011650 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.313897 B = 2402.943881 C = 3325.717329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.055 3.945 4 C 0.149 3.851 5 N -0.589 5.589 6 C -0.322 4.322 7 H 0.030 0.970 8 C -0.050 4.050 9 N -0.941 5.941 10 Si 1.090 2.910 11 H -0.279 1.279 12 H -0.306 1.306 13 H -0.272 1.272 14 C 0.216 3.784 15 C 0.293 3.707 16 N -0.544 5.544 17 C 0.122 3.878 18 C -0.229 4.229 19 C 0.128 3.872 20 N -0.539 5.539 21 H 0.099 0.901 22 H 0.053 0.947 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.188 0.812 32 H 0.187 0.813 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -10.610 10.333 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.024 4.024 4 C 0.024 3.976 5 N -0.311 5.311 6 C -0.452 4.452 7 H 0.048 0.952 8 C -0.247 4.247 9 N -0.582 5.582 10 Si 0.918 3.082 11 H -0.204 1.204 12 H -0.235 1.235 13 H -0.198 1.198 14 C 0.088 3.912 15 C 0.023 3.977 16 N -0.259 5.259 17 C -0.043 4.043 18 C -0.250 4.250 19 C -0.037 4.037 20 N -0.254 5.254 21 H 0.117 0.883 22 H 0.071 0.929 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.205 0.795 32 H 0.205 0.795 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.649 -9.332 10.807 14.373 hybrid contribution -0.116 -0.846 -1.268 1.529 sum 1.533 -10.178 9.539 14.033 Atomic orbital electron populations 1.22865 0.80406 1.03458 1.00122 1.87846 1.20737 1.28029 1.95399 1.23050 0.95360 0.84604 0.99340 1.21160 0.91770 0.96278 0.88378 1.44117 1.75554 1.01051 1.10344 1.19854 1.39620 0.98989 0.86755 0.95222 1.27074 0.98831 0.92842 1.06000 1.70955 1.41663 1.32984 1.12565 0.83320 0.75552 0.75495 0.73814 1.20437 1.23489 1.19850 1.19768 0.87108 0.84665 0.99687 1.24664 0.98777 0.89187 0.85031 1.68329 1.03206 1.14473 1.39893 1.23873 0.93162 0.89891 0.97394 1.23225 1.03589 1.03683 0.94547 1.23938 0.87482 0.90098 1.02220 1.68304 1.24455 1.13737 1.18892 0.88308 0.92855 0.94953 0.91599 0.95279 0.91380 0.93868 0.93706 0.89562 0.92762 0.79468 0.79530 0.78275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -14.76 9.53 -148.98 -1.42 -16.18 16 3 C 0.06 2.16 6.28 71.98 0.45 2.61 16 4 C 0.15 6.65 4.65 86.38 0.40 7.05 16 5 N -0.59 -29.44 2.09 -706.34 -1.48 -30.92 16 6 C -0.32 -18.79 9.77 84.03 0.82 -17.97 16 7 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 8 C -0.05 -2.98 5.25 84.86 0.45 -2.53 16 9 N -0.94 -59.84 13.71 21.65 0.30 -59.54 16 10 Si 1.09 54.95 25.43 68.60 1.74 56.70 16 11 H -0.28 -13.55 6.58 99.48 0.65 -12.90 16 12 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 13 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.22 9.75 5.92 85.63 0.51 10.26 16 15 C 0.29 12.46 7.23 138.75 1.00 13.47 16 16 N -0.54 -22.71 10.33 -187.84 -1.94 -24.65 16 17 C 0.12 3.76 11.30 84.70 0.96 4.72 16 18 C -0.23 -5.52 10.17 22.44 0.23 -5.29 16 19 C 0.13 3.54 11.30 84.70 0.96 4.50 16 20 N -0.54 -20.19 10.33 -187.85 -1.94 -22.13 16 21 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 23 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 25 H 0.03 1.27 8.14 -2.38 -0.02 1.26 16 26 H 0.07 2.87 8.07 -2.39 -0.02 2.85 16 27 H 0.04 2.03 3.37 -2.39 -0.01 2.02 16 28 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 29 H 0.09 3.66 7.12 -2.39 -0.02 3.64 16 30 H 0.05 2.56 8.04 -2.39 -0.02 2.54 16 31 H 0.19 4.35 8.06 -2.91 -0.02 4.32 16 32 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.20 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -74.51 283.39 3.29 -71.22 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.00 Total: 6.69 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 7.02 Total: 18.81 kcal Atomic # 7 Polarization: -132.17 SS G_CDS: -5.06 Total: -137.24 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.42 Total: -16.18 kcal Atomic # 14 Polarization: 54.95 SS G_CDS: 1.74 Total: 56.70 kcal Total: -74.51 3.29 -71.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316540030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.171 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds