Wall clock time and date at job start Mon Mar 30 2020 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48495 * 109.47483 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 300.00363 * 3 2 1 6 6 H 1.48501 * 109.47055 * 59.99972 * 3 2 1 7 7 C 1.38949 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00101 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00187 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99689 * 180.02562 * 10 9 7 13 13 H 1.08993 * 109.47221 * 59.99996 * 12 10 9 14 14 C 1.53002 * 109.46931 * 299.99391 * 12 10 9 15 15 C 1.53000 * 109.47233 * 300.00761 * 14 12 10 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 14 12 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 14 18 18 C 1.52997 * 109.46907 * 180.02562 * 12 10 9 19 19 H 1.09002 * 109.47153 * 179.97438 * 18 12 10 20 20 C 1.53002 * 109.47143 * 299.99644 * 18 12 10 21 21 C 1.53002 * 117.49944 * 248.62191 * 20 18 12 22 22 C 1.52994 * 60.00113 * 252.50959 * 21 20 18 23 23 H 0.96999 * 120.00175 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99882 * 0.02562 * 9 7 2 25 25 H 1.08992 * 109.47063 * 180.02562 * 14 12 10 26 26 H 1.09004 * 109.46733 * 60.00104 * 14 12 10 27 27 H 1.09002 * 109.47398 * 59.99826 * 15 14 12 28 28 H 1.09001 * 109.47194 * 180.02562 * 15 14 12 29 29 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 31 31 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 33 33 H 1.09001 * 115.55163 * 34.33174 * 20 18 12 34 34 H 1.08999 * 117.49698 * 359.97438 * 21 20 18 35 35 H 1.08999 * 117.49844 * 145.01579 * 21 20 18 36 36 H 1.08995 * 117.50316 * 252.50842 * 22 21 20 37 37 H 1.09005 * 117.49948 * 107.48786 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 1 0.6175 -4.9205 -0.8902 14 6 0.3638 -4.9443 1.2489 15 6 1.2430 -4.8634 2.4985 16 6 2.2373 -6.0263 2.4986 17 6 3.1173 -5.9451 1.2497 18 6 2.2380 -6.0258 0.0007 19 1 1.6930 -6.9698 0.0008 20 6 3.1186 -5.9448 -1.2479 21 6 2.9341 -7.0267 -2.3139 22 6 4.1844 -7.0269 -1.4322 23 1 -0.4850 0.8400 0.0004 24 1 0.3534 -2.3907 -0.0002 25 1 -0.1809 -5.8884 1.2488 26 1 -0.3445 -4.1157 1.2489 27 1 1.7880 -3.9194 2.4988 28 1 0.6161 -4.9218 3.3883 29 1 2.8634 -5.9690 3.3889 30 1 1.6923 -6.9703 2.4982 31 1 3.8253 -6.7738 1.2495 32 1 3.6623 -5.0011 1.2500 33 1 3.3595 -4.9379 -1.5888 34 1 2.1857 -7.7965 -2.1254 35 1 3.0533 -6.7317 -3.3564 36 1 5.1263 -6.7320 -1.8945 37 1 4.2583 -7.7966 -0.6638 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335527318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:39 Heat of formation + Delta-G solvation = -39.249362 kcal Electronic energy + Delta-G solvation = -17743.110935 eV Core-core repulsion = 15098.925086 eV Total energy + Delta-G solvation = -2644.185849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83254 -36.97376 -35.66714 -33.88229 -31.45168 -30.30473 -29.80725 -25.14558 -23.03922 -22.76855 -21.85455 -20.26160 -19.74787 -18.44378 -17.60979 -15.73210 -15.40887 -14.93016 -14.49075 -14.02608 -13.83387 -13.62695 -13.06511 -12.98329 -12.37166 -12.05637 -11.67660 -11.59563 -11.32024 -11.26735 -11.14347 -11.02391 -10.53064 -10.34333 -10.20952 -10.18383 -10.04045 -9.92247 -9.49440 -9.35286 -9.22537 -8.04483 -7.88871 -6.38428 -3.78574 3.17534 3.27992 3.34898 3.97177 4.19278 4.23174 4.87725 5.05087 5.14134 5.28281 5.34094 5.43069 5.43436 5.46555 5.76493 5.82596 5.89199 5.91290 5.98059 6.05528 6.08125 6.14635 6.15821 6.31447 6.36826 6.41472 6.52408 6.67303 6.72318 6.74303 6.78545 6.95122 7.23248 7.58614 8.11299 8.66722 9.22325 9.61195 10.13029 10.79458 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.007506 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.453665 B = 3729.693901 C = 4165.240999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.454 3.546 11 O -0.585 6.585 12 C -0.096 4.096 13 H 0.079 0.921 14 C -0.108 4.108 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.024 4.024 19 H 0.058 0.942 20 C -0.127 4.127 21 C -0.195 4.195 22 C -0.182 4.182 23 H 0.270 0.730 24 H 0.391 0.609 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 -11.214 0.967 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.240 3.760 11 O -0.471 6.471 12 C -0.118 4.118 13 H 0.097 0.903 14 C -0.146 4.146 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.162 4.162 18 C -0.043 4.043 19 H 0.077 0.923 20 C -0.145 4.145 21 C -0.232 4.232 22 C -0.219 4.219 23 H 0.080 0.920 24 H 0.225 0.775 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.272 -11.034 0.967 11.149 hybrid contribution -0.312 0.848 -0.077 0.907 sum 0.960 -10.186 0.890 10.269 Atomic orbital electron populations 1.69619 1.05908 1.27923 1.50897 1.25237 0.95586 0.99637 0.97521 0.85851 0.79714 0.81415 0.77666 1.19290 1.20838 1.20821 1.19750 0.93342 0.82391 1.47243 0.87939 1.41940 1.09186 1.04662 1.64073 1.19756 0.88139 0.84663 0.83440 1.90414 1.13858 1.86924 1.55867 1.21203 0.97123 0.94817 0.98669 0.90320 1.21495 0.97373 1.01595 0.94101 1.21529 0.97615 0.99685 0.96982 1.21509 0.97702 0.97767 0.98226 1.21815 0.97685 1.04214 0.92477 1.20354 0.94350 0.95972 0.93648 0.92316 1.22589 0.99767 0.95923 0.96248 1.23013 1.00608 1.03082 0.96536 1.22804 0.93504 1.02795 1.02823 0.92011 0.77525 0.92171 0.91489 0.91082 0.92704 0.92743 0.93150 0.93385 0.87933 0.85949 0.89559 0.89548 0.89507 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.56 -14.08 5.18 -10.96 -0.06 -14.13 16 10 C 0.45 10.31 5.13 -10.98 -0.06 10.26 16 11 O -0.58 -14.74 11.28 5.55 0.06 -14.68 16 12 C -0.10 -1.73 2.55 -91.77 -0.23 -1.96 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 14 C -0.11 -1.73 5.36 -26.73 -0.14 -1.87 16 15 C -0.12 -1.97 5.70 -26.73 -0.15 -2.12 16 16 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 17 C -0.12 -2.08 4.77 -26.76 -0.13 -2.21 16 18 C -0.02 -0.40 2.08 -90.64 -0.19 -0.59 16 19 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 20 C -0.13 -2.15 4.50 -90.62 -0.41 -2.55 16 21 C -0.20 -2.73 10.18 -26.73 -0.27 -3.00 16 22 C -0.18 -2.62 9.73 -26.73 -0.26 -2.88 16 23 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.39 9.56 7.32 -40.82 -0.30 9.26 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.11 7.56 -51.93 -0.39 0.72 16 27 H 0.07 1.39 7.22 -51.93 -0.37 1.02 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.73 7.28 -51.93 -0.38 0.35 16 32 H 0.10 2.09 5.51 -51.93 -0.29 1.81 16 33 H 0.12 2.50 6.10 -51.93 -0.32 2.18 16 34 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.15 7.60 -51.93 -0.39 0.76 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -28.37 288.49 -7.93 -36.29 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -5.74 Total: 12.62 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.24 Total: -16.66 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.67 Total: -38.00 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.06 Total: -14.68 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.37 -7.93 -36.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335527318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.957 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds