Wall clock time and date at job start Mon Mar 30 2020 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48495 * 109.47483 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 300.00363 * 3 2 1 6 6 H 1.48501 * 109.47055 * 59.99972 * 3 2 1 7 7 C 1.38949 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00101 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00187 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99689 * 180.02562 * 10 9 7 13 13 H 1.08993 * 109.47221 * 59.99996 * 12 10 9 14 14 C 1.53002 * 109.46931 * 299.99391 * 12 10 9 15 15 C 1.53000 * 109.47233 * 300.00761 * 14 12 10 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 14 12 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 14 18 18 C 1.52997 * 109.46907 * 180.02562 * 12 10 9 19 19 H 1.09002 * 109.47153 * 179.97438 * 18 12 10 20 20 C 1.53002 * 109.47143 * 299.99644 * 18 12 10 21 21 C 1.53002 * 117.49944 * 248.62191 * 20 18 12 22 22 C 1.52994 * 60.00113 * 252.50959 * 21 20 18 23 23 H 0.96999 * 120.00175 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99882 * 0.02562 * 9 7 2 25 25 H 1.08992 * 109.47063 * 180.02562 * 14 12 10 26 26 H 1.09004 * 109.46733 * 60.00104 * 14 12 10 27 27 H 1.09002 * 109.47398 * 59.99826 * 15 14 12 28 28 H 1.09001 * 109.47194 * 180.02562 * 15 14 12 29 29 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 31 31 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 33 33 H 1.09001 * 115.55163 * 34.33174 * 20 18 12 34 34 H 1.08999 * 117.49698 * 359.97438 * 21 20 18 35 35 H 1.08999 * 117.49844 * 145.01579 * 21 20 18 36 36 H 1.08995 * 117.50316 * 252.50842 * 22 21 20 37 37 H 1.09005 * 117.49948 * 107.48786 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 1 0.6175 -4.9205 -0.8902 14 6 0.3638 -4.9443 1.2489 15 6 1.2430 -4.8634 2.4985 16 6 2.2373 -6.0263 2.4986 17 6 3.1173 -5.9451 1.2497 18 6 2.2380 -6.0258 0.0007 19 1 1.6930 -6.9698 0.0008 20 6 3.1186 -5.9448 -1.2479 21 6 2.9341 -7.0267 -2.3139 22 6 4.1844 -7.0269 -1.4322 23 1 -0.4850 0.8400 0.0004 24 1 0.3534 -2.3907 -0.0002 25 1 -0.1809 -5.8884 1.2488 26 1 -0.3445 -4.1157 1.2489 27 1 1.7880 -3.9194 2.4988 28 1 0.6161 -4.9218 3.3883 29 1 2.8634 -5.9690 3.3889 30 1 1.6923 -6.9703 2.4982 31 1 3.8253 -6.7738 1.2495 32 1 3.6623 -5.0011 1.2500 33 1 3.3595 -4.9379 -1.5888 34 1 2.1857 -7.7965 -2.1254 35 1 3.0533 -6.7317 -3.3564 36 1 5.1263 -6.7320 -1.8945 37 1 4.2583 -7.7966 -0.6638 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335527318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:39 Heat of formation + Delta-G solvation = -55.436259 kcal Electronic energy + Delta-G solvation = -17743.812852 eV Core-core repulsion = 15098.925086 eV Total energy + Delta-G solvation = -2644.887765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.36931 -38.54844 -36.98255 -35.86778 -33.35108 -31.77230 -31.13497 -27.10625 -24.39209 -24.15699 -23.06269 -21.71274 -21.04463 -20.25291 -19.48902 -17.33351 -16.88387 -16.40835 -16.31683 -15.74716 -15.21715 -15.00095 -14.61084 -14.47051 -13.84503 -13.54060 -13.37334 -13.04183 -12.85716 -12.80579 -12.47509 -12.36907 -12.29359 -12.12818 -11.84275 -11.62948 -11.43269 -11.20594 -11.09847 -10.74341 -10.46133 -9.91898 -9.84211 -8.43740 -5.90930 1.35210 1.39347 1.53260 2.15713 2.30243 3.03243 3.24394 3.30545 3.73258 3.87125 4.01226 4.18114 4.20087 4.23855 4.41058 4.54694 4.59176 4.67542 4.73528 4.76489 4.81982 4.85179 4.96483 5.03200 5.11299 5.16881 5.32925 5.37805 5.40628 5.42991 5.45172 5.49698 5.59567 5.84804 6.08249 6.65948 7.18442 7.65180 8.21915 8.74367 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.007506 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.453665 B = 3729.693901 C = 4165.240999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.016 4.016 3 Si 0.988 3.012 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.327 4.327 8 H 0.077 0.923 9 N -0.579 5.579 10 C 0.456 3.544 11 O -0.612 6.612 12 C -0.092 4.092 13 H 0.090 0.910 14 C -0.104 4.104 15 C -0.121 4.121 16 C -0.109 4.109 17 C -0.123 4.123 18 C -0.019 4.019 19 H 0.094 0.906 20 C -0.159 4.159 21 C -0.174 4.174 22 C -0.174 4.174 23 H 0.275 0.725 24 H 0.392 0.608 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.023 0.977 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -13.396 1.212 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.215 4.215 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.456 4.456 8 H 0.095 0.905 9 N -0.215 5.215 10 C 0.244 3.756 11 O -0.499 6.499 12 C -0.113 4.113 13 H 0.108 0.892 14 C -0.142 4.142 15 C -0.159 4.159 16 C -0.146 4.146 17 C -0.161 4.161 18 C -0.037 4.037 19 H 0.112 0.888 20 C -0.177 4.177 21 C -0.211 4.211 22 C -0.211 4.211 23 H 0.085 0.915 24 H 0.226 0.774 25 H 0.119 0.881 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.374 -13.228 1.210 13.289 hybrid contribution 0.036 1.478 -0.169 1.488 sum 0.410 -11.750 1.041 11.804 Atomic orbital electron populations 1.69683 1.06769 1.28937 1.51130 1.25974 0.96491 1.02243 0.96773 0.84939 0.78017 0.77545 0.78254 1.19937 1.19724 1.19693 1.19670 0.92533 0.84244 1.49202 0.90525 1.42006 1.09097 1.04812 1.65598 1.20755 0.88104 0.85849 0.80866 1.90414 1.15590 1.87690 1.56157 1.21261 0.97516 0.92234 1.00332 0.89221 1.21516 0.96799 1.03254 0.92586 1.21528 0.97990 0.98129 0.98239 1.21495 0.97311 0.98421 0.97403 1.21730 0.98188 1.02284 0.93873 1.20380 0.93908 0.96373 0.93059 0.88798 1.22366 1.02551 0.94650 0.98171 1.23105 1.00536 1.01485 0.95925 1.22883 0.93341 1.01642 1.03255 0.91519 0.77438 0.88092 0.92665 0.95826 0.90525 0.92239 0.89785 0.91660 0.92713 0.90735 0.87063 0.89308 0.89833 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.08 13.05 21.66 0.28 -50.80 16 2 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 3 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.58 -30.27 5.18 -306.98 -1.59 -31.86 16 10 C 0.46 21.61 5.13 87.66 0.45 22.06 16 11 O -0.61 -32.76 11.28 -3.05 -0.03 -32.80 16 12 C -0.09 -3.22 2.55 -11.54 -0.03 -3.25 16 13 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 14 C -0.10 -3.12 5.36 30.60 0.16 -2.95 16 15 C -0.12 -3.81 5.70 30.59 0.17 -3.63 16 16 C -0.11 -2.97 5.92 30.59 0.18 -2.78 16 17 C -0.12 -3.96 4.77 30.58 0.15 -3.81 16 18 C -0.02 -0.57 2.08 -10.81 -0.02 -0.60 16 19 H 0.09 2.29 7.90 -2.39 -0.02 2.27 16 20 C -0.16 -5.25 4.50 -10.79 -0.05 -5.30 16 21 C -0.17 -4.37 10.18 30.59 0.31 -4.06 16 22 C -0.17 -4.66 9.73 30.59 0.30 -4.37 16 23 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 24 H 0.39 19.92 7.32 -92.71 -0.68 19.24 16 25 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.05 1.79 7.56 -2.39 -0.02 1.77 16 27 H 0.02 0.94 7.22 -2.39 -0.02 0.92 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.83 7.28 -2.39 -0.02 1.82 16 32 H 0.05 2.31 5.51 -2.39 -0.01 2.29 16 33 H 0.07 3.19 6.10 -2.39 -0.01 3.18 16 34 H 0.11 2.28 8.05 -2.39 -0.02 2.26 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.11 2.43 7.60 -2.38 -0.02 2.41 16 Total: -1.00 -64.73 288.49 3.97 -60.76 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.38 Total: 35.76 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 2.90 Total: -27.17 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.31 Total: -82.66 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.03 Total: -32.80 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.73 3.97 -60.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335527318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.324 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds