Wall clock time and date at job start Mon Mar 30 2020 03:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.46985 * 2 1 4 4 C 1.50693 * 109.47288 * 240.00074 * 2 1 3 5 5 H 1.08001 * 119.99800 * 239.99943 * 4 2 1 6 6 C 1.37883 * 120.00021 * 59.99616 * 4 2 1 7 7 N 1.31511 * 120.00228 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99770 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46891 * 60.00197 * 8 6 4 10 10 H 1.48498 * 109.46912 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47030 * 300.00230 * 8 6 4 12 12 N 1.46499 * 109.47147 * 119.99768 * 2 1 3 13 13 N 1.40105 * 120.00063 * 270.00164 * 12 2 1 14 14 C 1.29736 * 119.99968 * 180.02562 * 13 12 2 15 15 C 1.47466 * 119.99958 * 180.02562 * 14 13 12 16 16 C 1.41098 * 126.42836 * 179.68912 * 15 14 13 17 17 N 1.30554 * 108.25895 * 179.81198 * 16 15 14 18 18 N 1.39927 * 109.06269 * 0.44280 * 17 16 15 19 19 C 1.46497 * 125.82548 * 179.74340 * 18 17 16 20 20 C 1.35181 * 108.35042 * 359.71954 * 18 17 16 21 21 N 1.38763 * 126.40879 * 179.97438 * 20 18 17 22 22 H 1.09005 * 109.46870 * 60.00056 * 1 2 3 23 23 H 1.08997 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47403 * 300.00446 * 1 2 3 25 25 H 0.96997 * 120.00073 * 179.97438 * 7 6 4 26 26 H 0.96999 * 119.99984 * 89.99974 * 12 2 1 27 27 H 1.07999 * 120.00073 * 359.97438 * 14 13 12 28 28 H 1.08009 * 125.86991 * 359.97438 * 16 15 14 29 29 H 1.08998 * 109.47682 * 269.96223 * 19 18 17 30 30 H 1.08995 * 109.47130 * 29.96984 * 19 18 17 31 31 H 1.09001 * 109.46940 * 149.96328 * 19 18 17 32 32 H 0.97000 * 119.99725 * 179.97438 * 21 20 18 33 33 H 0.96993 * 120.00055 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8282 -2.5198 -4.0081 10 1 1.8280 -0.4193 -5.2204 11 1 3.8076 -1.1189 -4.0076 12 7 2.0183 -0.6906 1.1962 13 7 2.2518 0.0300 2.3748 14 6 2.6848 -0.5814 3.4340 15 6 2.9300 0.1769 4.6747 16 6 3.3919 -0.3481 5.9002 17 7 3.4863 0.6332 6.7560 18 7 3.0853 1.8213 6.1351 19 6 3.0431 3.1446 6.7621 20 6 2.7441 1.5397 4.8577 21 7 2.2920 2.4443 3.9075 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7095 1.1617 -3.4844 26 1 2.1800 -1.6467 1.1722 27 1 2.8648 -1.6460 3.4073 28 1 3.6294 -1.3835 6.0957 29 1 2.0637 3.3015 7.2141 30 1 3.8126 3.2069 7.5314 31 1 3.2216 3.9103 6.0070 32 1 2.0727 2.1392 3.0132 33 1 2.1953 3.3816 4.1375 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382408978.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:06 Heat of formation + Delta-G solvation = 96.394763 kcal Electronic energy + Delta-G solvation = -16151.508244 eV Core-core repulsion = 13441.956774 eV Total energy + Delta-G solvation = -2709.551470 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.90524 -37.85979 -35.90960 -35.46067 -33.99789 -32.75191 -30.03079 -28.34639 -27.45418 -27.11733 -23.38833 -22.10128 -21.81189 -20.66116 -18.71520 -18.28999 -17.35762 -16.93779 -16.46762 -16.41075 -15.92475 -15.30508 -14.46920 -14.42215 -14.13012 -13.91072 -13.67997 -13.30722 -13.19978 -12.84868 -12.69760 -12.36463 -12.15820 -12.05286 -11.98347 -11.52795 -11.07307 -10.70680 -10.53800 -9.88039 -9.08476 -8.16153 -7.80264 -6.29337 1.03338 1.38903 1.44687 1.46178 1.51196 1.54192 2.34214 2.61284 2.63592 3.00411 3.15248 3.69871 4.20074 4.44793 4.51503 4.56850 4.65675 4.74008 4.82509 5.03108 5.16131 5.22476 5.41687 5.57009 5.70337 5.86052 5.90377 5.98572 6.29425 6.46349 6.56850 6.74027 6.96004 7.10258 7.42968 8.04170 8.90874 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.047957 B = 0.004618 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.715027 B = 6061.536928 C = 6327.699096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.313 3.687 3 H 0.001 0.999 4 C -0.547 4.547 5 H 0.058 0.942 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.654 5.654 13 N -0.285 5.285 14 C 0.098 3.902 15 C -0.291 4.291 16 C 0.106 3.894 17 N -0.337 5.337 18 N -0.408 5.408 19 C 0.095 3.905 20 C 0.387 3.613 21 N -0.833 5.833 22 H 0.066 0.934 23 H 0.025 0.975 24 H 0.018 0.982 25 H 0.265 0.735 26 H 0.368 0.632 27 H 0.117 0.883 28 H 0.215 0.785 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.423 0.577 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 2.846 15.263 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.208 3.792 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.199 1.199 12 N -0.391 5.391 13 N -0.094 5.094 14 C -0.113 4.113 15 C -0.310 4.310 16 C -0.083 4.083 17 N -0.158 5.158 18 N -0.197 5.197 19 C -0.045 4.045 20 C 0.153 3.847 21 N -0.385 5.385 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.205 0.795 27 H 0.134 0.866 28 H 0.231 0.769 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.259 0.741 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.109 4.395 15.857 16.746 hybrid contribution 0.026 -1.370 -1.874 2.322 sum 3.135 3.025 13.983 14.646 Atomic orbital electron populations 1.22026 0.99250 0.98751 0.99435 1.17971 0.89849 0.91493 0.79841 0.98069 1.21544 1.32207 1.13384 0.91438 0.92400 1.25656 0.94962 0.95669 1.01737 1.69999 1.36987 1.23714 1.24543 0.85495 0.78549 0.78698 0.78151 1.19452 1.20667 1.19938 1.48250 1.76654 1.07249 1.06938 1.73484 1.12924 1.28482 0.94515 1.23065 1.01102 0.97051 0.90063 1.18028 1.26726 0.90544 0.95691 1.24056 0.95494 0.99902 0.88878 1.77086 1.27048 0.90156 1.21474 1.48335 1.55661 1.09078 1.06669 1.22060 1.04718 0.77778 0.99957 1.18511 0.92438 0.90683 0.83099 1.41950 1.73865 1.09042 1.13608 0.91517 0.95587 0.96320 0.92532 0.79533 0.86578 0.76898 0.89877 0.88165 0.88405 0.74123 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 9.29 71.98 0.67 -6.12 16 2 C 0.31 16.28 3.23 44.24 0.14 16.42 16 3 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 4 C -0.55 -29.88 8.74 25.60 0.22 -29.66 16 5 H 0.06 3.09 7.79 -2.91 -0.02 3.07 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -51.51 11.32 21.45 0.24 -51.26 16 8 Si 0.97 42.69 29.54 68.60 2.03 44.71 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 N -0.65 -29.44 6.10 -172.52 -1.05 -30.50 16 13 N -0.28 -11.50 9.29 -52.19 -0.48 -11.98 16 14 C 0.10 3.34 11.01 87.44 0.96 4.30 16 15 C -0.29 -8.90 6.14 -20.02 -0.12 -9.02 16 16 C 0.11 2.71 12.00 85.58 1.03 3.74 16 17 N -0.34 -9.16 12.50 -56.34 -0.70 -9.87 16 18 N -0.41 -10.12 4.01 -364.88 -1.46 -11.58 16 19 C 0.09 1.39 11.26 127.77 1.44 2.83 16 20 C 0.39 11.11 7.99 132.20 1.06 12.17 16 21 N -0.83 -21.90 9.06 -54.25 -0.49 -22.40 16 22 H 0.07 3.61 6.07 -2.38 -0.01 3.60 16 23 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.37 15.60 8.58 -213.32 -1.83 13.77 16 27 H 0.12 3.46 8.02 -2.91 -0.02 3.43 16 28 H 0.21 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.02 7.48 -2.39 -0.02 1.00 16 32 H 0.42 13.55 6.77 -92.71 -0.63 12.92 16 33 H 0.41 7.64 8.08 -92.71 -0.75 6.89 16 Total: -1.00 -65.86 287.97 1.87 -64.00 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: -2.06 Total: 32.70 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.85 Total: -3.82 kcal Atomic # 7 Polarization: -133.64 SS G_CDS: -3.95 Total: -137.59 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -65.86 1.87 -64.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382408978.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.391 kcal (2) G-P(sol) polarization free energy of solvation -65.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds