Wall clock time and date at job start Mon Mar 30 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47231 * 265.00602 * 7 6 2 9 9 O 1.21287 * 119.99797 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00137 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99800 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46718 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.46708 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00461 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99479 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00102 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99575 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47659 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47120 * 120.00491 * 17 15 13 20 20 H 1.48507 * 109.47435 * 240.00312 * 17 15 13 21 21 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 22 22 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 23 23 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 24 24 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 25 25 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 26 26 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 27 27 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 28 28 H 0.96997 * 119.99969 * 359.97438 * 10 8 7 29 29 H 1.08998 * 109.46867 * 299.99452 * 11 10 8 30 30 H 1.08997 * 109.47045 * 60.00348 * 11 10 8 31 31 H 1.09002 * 109.47059 * 299.99955 * 12 11 10 32 32 H 1.09003 * 109.46839 * 59.99993 * 12 11 10 33 33 H 0.97000 * 119.99447 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7619 -3.0421 1.4148 9 8 2.0804 -2.3167 2.3331 10 7 1.3762 -4.3100 1.6601 11 6 1.3422 -4.8121 3.0359 12 6 0.8724 -6.2682 3.0359 13 6 0.8380 -6.7849 4.4512 14 1 1.1232 -6.1395 5.2688 15 6 0.4425 -8.0817 4.7021 16 7 0.0958 -8.8678 3.7064 17 14 0.4006 -8.7223 6.4563 18 1 0.8344 -7.6488 7.3860 19 1 -0.9824 -9.1425 6.7969 20 1 1.3159 -9.8852 6.5807 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5143 24 1 4.4053 1.3713 0.0112 25 1 4.4212 -1.2961 -0.0013 26 1 0.7995 -2.5863 -0.4346 27 1 2.4874 -3.1293 -0.5903 28 1 1.1212 -4.8900 0.9257 29 1 2.3405 -4.7521 3.4693 30 1 0.6529 -4.2083 3.6261 31 1 -0.1260 -6.3279 2.6026 32 1 1.5615 -6.8723 2.4456 33 1 -0.1821 -9.7802 3.8831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436028271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:13 Heat of formation + Delta-G solvation = 27.911604 kcal Electronic energy + Delta-G solvation = -16009.921202 eV Core-core repulsion = 13265.107328 eV Total energy + Delta-G solvation = -2744.813874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.27437 -39.11928 -34.94271 -33.46629 -32.90934 -32.18492 -29.78056 -27.51972 -26.74672 -24.62924 -21.31702 -21.13196 -20.61275 -19.50699 -17.01462 -16.84099 -16.31872 -15.32928 -15.26388 -15.01308 -14.47326 -14.32852 -13.87998 -13.37523 -13.21771 -12.74992 -12.59774 -12.47415 -12.31564 -11.91880 -11.24419 -11.07834 -10.66894 -10.64191 -10.38776 -9.89409 -9.59636 -9.33722 -9.14698 -8.60819 -8.47420 -8.41160 -6.13460 -4.16270 1.82916 2.49889 2.85171 2.89136 3.25910 3.33706 3.38644 3.68469 4.38703 4.40357 4.50043 4.85800 5.01600 5.12033 5.14301 5.23941 5.27184 5.36071 5.67846 5.74761 6.14441 6.27534 6.29278 6.67364 6.68123 6.83239 6.97908 7.46648 7.56252 7.71022 7.84683 7.91921 8.23129 8.55932 8.89962 9.48993 10.98148 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057507 B = 0.003949 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.784241 B = 7088.520995 C = 7151.564352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.301 5.301 4 C 0.046 3.954 5 C -0.260 4.260 6 C 0.109 3.891 7 C -0.083 4.083 8 C 0.506 3.494 9 O -0.538 6.538 10 N -0.721 5.721 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.182 0.818 25 H 0.145 0.855 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.398 0.602 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 12.626 -11.257 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.150 5.150 3 N -0.122 5.122 4 C -0.140 4.140 5 C -0.289 4.289 6 C -0.019 4.019 7 C -0.125 4.125 8 C 0.290 3.710 9 O -0.415 6.415 10 N -0.372 5.372 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.103 0.897 24 H 0.199 0.801 25 H 0.163 0.837 26 H 0.120 0.880 27 H 0.137 0.863 28 H 0.232 0.768 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.195 13.984 -10.608 17.593 hybrid contribution 0.318 -1.527 0.606 1.674 sum 1.513 12.457 -10.001 16.046 Atomic orbital electron populations 1.21845 0.74656 1.04094 1.03689 1.48370 1.06385 1.03350 1.56920 1.77307 1.01893 1.07809 1.25224 1.23754 0.95159 0.95025 1.00020 1.21166 0.96148 0.95043 1.16553 1.20296 0.91391 0.89062 1.01156 1.20329 1.04379 0.90825 0.96989 1.20237 0.78081 0.82512 0.90184 1.90734 1.48007 1.56699 1.46041 1.46312 1.67152 1.12270 1.11433 1.21738 1.00905 0.97765 0.79605 1.19334 0.96869 0.88076 0.98238 1.21090 1.45322 0.97315 0.92337 0.92201 1.24995 0.95021 0.96842 0.97410 1.69961 1.45083 1.07345 1.30908 0.86459 0.77705 0.78912 0.84518 1.19571 1.20920 1.20886 0.90561 0.89309 0.89653 0.80116 0.83688 0.87995 0.86270 0.76805 0.92479 0.92614 0.95936 0.95869 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 11.27 59.85 0.67 1.62 16 2 N -0.37 -4.97 4.01 -63.89 -0.26 -5.22 16 3 N -0.30 -4.41 12.58 30.63 0.39 -4.03 16 4 C 0.05 0.59 12.03 -17.36 -0.21 0.38 16 5 C -0.26 -3.44 10.72 -40.01 -0.43 -3.87 16 6 C 0.11 1.46 5.42 -82.27 -0.45 1.01 16 7 C -0.08 -0.92 5.99 -29.04 -0.17 -1.09 16 8 C 0.51 8.01 7.82 -10.98 -0.09 7.92 16 9 O -0.54 -11.01 16.03 5.55 0.09 -10.92 16 10 N -0.72 -11.65 5.56 -60.29 -0.33 -11.98 16 11 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 12 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 13 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.60 6.98 -51.92 -0.36 0.23 16 24 H 0.18 1.67 8.06 -52.48 -0.42 1.25 16 25 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.10 0.83 6.95 -51.93 -0.36 0.47 16 27 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.40 5.31 8.47 -40.82 -0.35 4.96 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 292.39 15.07 4.41 4.41 Total: -1.00 -34.46 292.39 -5.65 -40.11 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.42 Total: 0.91 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.24 Total: -4.42 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.53 Total: -46.20 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.46 -5.65 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436028271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.022 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds