Wall clock time and date at job start Mon Mar 30 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37451 * 126.48231 * 2 1 4 4 C 1.34490 * 106.94000 * 179.97438 * 3 2 1 5 5 N 1.34269 * 108.29705 * 0.02562 * 4 3 2 6 6 C 1.31134 * 109.29715 * 359.97438 * 5 4 3 7 7 N 1.38918 * 125.78000 * 179.74075 * 6 5 4 8 8 C 1.34774 * 120.00278 * 0.02562 * 7 6 5 9 9 O 1.21274 * 120.00003 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99882 * 180.02562 * 8 7 6 11 11 C 1.53004 * 109.46724 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46620 * 179.97438 * 11 10 8 13 13 C 1.50704 * 109.46769 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99935 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99970 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99929 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 119.99963 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47488 * 60.00585 * 17 15 13 19 19 H 1.48503 * 109.47162 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47383 * 300.00047 * 17 15 13 21 21 H 1.08997 * 109.47330 * 270.02426 * 1 2 3 22 22 H 1.09000 * 109.47315 * 30.02747 * 1 2 3 23 23 H 1.09004 * 109.46953 * 150.02286 * 1 2 3 24 24 H 1.07996 * 126.53294 * 359.97438 * 3 2 1 25 25 H 1.08000 * 125.84711 * 179.97438 * 4 3 2 26 26 H 0.97001 * 119.99863 * 180.02562 * 7 6 5 27 27 H 1.08990 * 109.46986 * 299.99683 * 10 8 7 28 28 H 1.09003 * 109.47196 * 60.00088 * 10 8 7 29 29 H 1.08990 * 109.47492 * 299.99816 * 11 10 8 30 30 H 1.09003 * 109.46851 * 60.00320 * 11 10 8 31 31 H 1.08998 * 109.47004 * 299.99887 * 12 11 10 32 32 H 1.08995 * 109.47288 * 60.00354 * 12 11 10 33 33 H 0.97000 * 120.00309 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2822 1.1052 0.0000 4 6 3.5497 0.6553 0.0006 5 7 3.5205 -0.6871 0.0004 6 6 2.2737 -1.0934 0.0002 7 7 1.8507 -2.4166 -0.0051 8 6 2.7572 -3.4139 -0.0103 9 8 3.9422 -3.1562 -0.0107 10 6 2.2982 -4.8494 -0.0167 11 6 3.5169 -5.7744 -0.0223 12 6 3.0509 -7.2317 -0.0281 13 6 4.2513 -8.1429 -0.0331 14 1 5.2469 -7.7244 -0.0317 15 6 4.0784 -9.5108 -0.0382 16 7 2.8660 -10.0204 -0.0394 17 14 5.5663 -10.6402 -0.0436 18 1 6.3846 -10.3867 1.1694 19 1 5.1140 -12.0547 -0.0494 20 1 6.3830 -10.3772 -1.2557 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.9668 2.1380 -0.0004 25 1 4.4385 1.2687 0.0003 26 1 0.9028 -2.6228 -0.0052 27 1 1.6987 -5.0431 0.8727 28 1 1.6976 -5.0349 -0.9072 29 1 4.1161 -5.5806 -0.9119 30 1 4.1178 -5.5890 0.8680 31 1 2.4520 -7.4252 0.8618 32 1 2.4497 -7.4174 -0.9182 33 1 2.7444 -10.9828 -0.0434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594048380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:41 Heat of formation + Delta-G solvation = 1.729724 kcal Electronic energy + Delta-G solvation = -15969.024087 eV Core-core repulsion = 13223.074882 eV Total energy + Delta-G solvation = -2745.949206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.02488 -40.64980 -36.22304 -35.83297 -34.85175 -34.01390 -30.40584 -29.12549 -27.79360 -25.96721 -23.49449 -22.40013 -21.52667 -20.72442 -19.06876 -18.42603 -17.65430 -17.21534 -16.60271 -16.46846 -16.38837 -15.23473 -15.00214 -14.75111 -14.30779 -14.25552 -13.83206 -13.78005 -13.41058 -13.11094 -12.61204 -12.51558 -12.43320 -11.73702 -11.53229 -11.47876 -11.29287 -11.07467 -10.57603 -10.55505 -10.52234 -8.85223 -8.19116 -6.28367 0.88836 1.24804 1.40662 1.43267 1.51392 1.69099 2.34243 2.35659 2.43452 3.14065 3.57537 3.89523 4.02146 4.19831 4.26889 4.40717 4.47769 4.65075 4.71593 4.77111 4.92869 4.97192 5.09450 5.20684 5.28902 5.55758 5.77617 5.77671 5.88448 6.13522 6.27983 6.31085 6.86549 7.07079 7.37372 7.40017 8.92112 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.062840 B = 0.003907 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.472605 B = 7164.355260 C = 7578.773319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.472 5.472 3 C -0.037 4.037 4 C -0.057 4.057 5 N -0.534 5.534 6 C 0.404 3.596 7 N -0.629 5.629 8 C 0.514 3.486 9 O -0.527 6.527 10 C -0.117 4.117 11 C -0.085 4.085 12 C 0.027 3.973 13 C -0.550 4.550 14 H 0.049 0.951 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.959 3.041 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 H 0.092 0.908 22 H 0.116 0.884 23 H 0.096 0.904 24 H 0.224 0.776 25 H 0.182 0.818 26 H 0.433 0.567 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.005 0.995 32 H 0.005 0.995 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.355 22.342 0.013 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.162 5.162 3 C -0.169 4.169 4 C -0.203 4.203 5 N -0.260 5.260 6 C 0.053 3.947 7 N -0.284 5.284 8 C 0.301 3.699 9 O -0.398 6.398 10 C -0.157 4.157 11 C -0.123 4.123 12 C -0.010 4.010 13 C -0.588 4.588 14 H 0.067 0.933 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.784 3.216 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.196 1.196 21 H 0.110 0.890 22 H 0.134 0.866 23 H 0.114 0.886 24 H 0.240 0.760 25 H 0.199 0.801 26 H 0.274 0.726 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.071 21.793 0.012 24.007 hybrid contribution -0.254 -0.374 0.012 0.452 sum -10.324 21.419 0.023 23.777 Atomic orbital electron populations 1.22450 0.73542 1.06755 1.05249 1.45649 1.08913 1.04372 1.57308 1.23167 0.89806 0.93125 1.10787 1.22704 0.98743 0.89899 1.08975 1.70715 1.17816 1.13700 1.23791 1.19759 0.86050 0.82859 1.06038 1.42519 1.11790 0.99877 1.74245 1.21486 0.85650 0.87866 0.74851 1.90800 1.18476 1.84402 1.46090 1.21673 1.00366 0.86944 1.06724 1.21201 0.96080 0.94664 1.00393 1.19009 0.95417 0.90709 0.95873 1.21678 0.93936 0.92339 1.50806 0.93255 1.25860 0.98868 0.99862 0.94707 1.70044 1.22579 1.12629 1.51546 0.85591 0.79418 0.77598 0.78993 1.19555 1.20266 1.19560 0.88972 0.86584 0.88584 0.75994 0.80080 0.72634 0.86275 0.86261 0.94140 0.94158 0.97660 0.97647 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 11.01 127.77 1.41 1.78 16 2 N -0.47 -8.46 3.19 -548.89 -1.75 -10.21 16 3 C -0.04 -0.64 11.60 82.95 0.96 0.33 16 4 C -0.06 -1.47 11.85 83.46 0.99 -0.48 16 5 N -0.53 -19.05 9.43 -197.67 -1.86 -20.92 16 6 C 0.40 11.38 8.43 260.20 2.19 13.58 16 7 N -0.63 -15.65 5.40 -311.96 -1.68 -17.33 16 8 C 0.51 17.36 7.79 87.66 0.68 18.04 16 9 O -0.53 -23.80 14.66 -3.01 -0.04 -23.84 16 10 C -0.12 -3.67 5.70 29.85 0.17 -3.50 16 11 C -0.09 -3.76 4.44 30.60 0.14 -3.62 16 12 C 0.03 1.42 4.97 29.85 0.15 1.57 16 13 C -0.55 -32.52 9.11 25.60 0.23 -32.28 16 14 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 15 C 0.01 0.30 5.46 84.66 0.46 0.76 16 16 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 17 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 21 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 22 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 23 H 0.10 0.35 7.51 -2.38 -0.02 0.33 16 24 H 0.22 1.53 8.06 -2.91 -0.02 1.51 16 25 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 26 H 0.43 6.23 7.96 -92.71 -0.74 5.49 16 27 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 30 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 31 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -85.45 289.86 4.72 -80.74 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 0.37 Total: 3.67 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 7.38 Total: -3.83 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -5.02 Total: -104.29 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.84 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -85.45 4.72 -80.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594048380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.465 kcal (2) G-P(sol) polarization free energy of solvation -85.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds