Wall clock time and date at job start Mon Mar 30 2020 03:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99692 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00146 * 180.02562 * 12 11 10 15 15 C 1.47061 * 136.05422 * 359.62477 * 14 12 11 16 16 C 1.53759 * 87.88473 * 152.97017 * 15 14 12 17 17 C 1.53004 * 114.08793 * 139.78286 * 16 15 14 18 18 C 1.53001 * 117.49936 * 155.30713 * 17 16 15 19 19 C 1.52994 * 117.49966 * 86.64853 * 17 16 15 20 20 C 1.47067 * 136.05475 * 180.02562 * 14 12 11 21 21 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 27 27 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 28 28 H 1.09003 * 113.47075 * 267.69398 * 15 14 12 29 29 H 1.08997 * 113.46988 * 38.13835 * 15 14 12 30 30 H 1.09005 * 114.38956 * 272.67402 * 16 15 14 31 31 H 1.08997 * 115.54457 * 300.97260 * 17 16 15 32 32 H 1.09001 * 117.49784 * 359.97438 * 18 17 16 33 33 H 1.09001 * 117.49979 * 145.01706 * 18 17 16 34 34 H 1.09006 * 117.49542 * 214.97904 * 19 17 16 35 35 H 1.09001 * 117.50054 * 359.97438 * 19 17 16 36 36 H 1.08998 * 113.46837 * 321.85918 * 20 14 12 37 37 H 1.09001 * 113.46520 * 92.24701 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6365 -0.0012 12 6 6.0539 -4.0573 -0.0004 13 8 5.2657 -4.9791 0.0005 14 7 7.3790 -4.3036 -0.0008 15 6 8.6064 -3.4938 -0.0085 16 6 9.3140 -4.6625 0.6970 17 6 10.7348 -4.9271 0.1948 18 6 11.7047 -5.6221 1.1525 19 6 11.8718 -4.1329 0.8407 20 6 8.2335 -5.5005 -0.0007 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6796 0.8894 23 1 3.8746 -0.6807 -0.8905 24 1 3.6585 -3.1502 0.8903 25 1 3.6578 -3.1505 -0.8897 26 1 5.9142 -2.1230 -0.8916 27 1 5.9156 -2.1224 0.8884 28 1 8.9894 -3.2954 -1.0095 29 1 8.5367 -2.5940 0.6027 30 1 9.2348 -4.6464 1.7841 31 1 10.8225 -5.1592 -0.8666 32 1 11.3306 -5.8905 2.1405 33 1 12.4308 -6.3112 0.7211 34 1 12.7079 -3.8428 0.2042 35 1 11.6076 -3.4215 1.6232 36 1 7.8460 -6.3106 0.6171 37 1 8.5173 -5.8312 -0.9998 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594362129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:44 Heat of formation + Delta-G solvation = -12.709870 kcal Electronic energy + Delta-G solvation = -16128.904408 eV Core-core repulsion = 13485.869398 eV Total energy + Delta-G solvation = -2643.035010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.49482 -39.45527 -37.16761 -36.15004 -34.15223 -31.41380 -29.63310 -27.01045 -25.73934 -23.93861 -23.05923 -21.88853 -21.05384 -19.96485 -18.87253 -17.97163 -17.15751 -16.73676 -16.25283 -16.20456 -16.10584 -14.96458 -14.79935 -14.22410 -14.19593 -13.83563 -13.53590 -13.48177 -13.16356 -12.74003 -12.52170 -12.29657 -12.12836 -12.06648 -11.80621 -11.75262 -11.53172 -11.35249 -11.21000 -10.75960 -10.73883 -10.62255 -9.74275 -8.28518 -6.34603 1.38072 1.41949 1.54152 1.57445 1.84951 2.38792 2.79024 3.06354 3.49429 3.64869 3.74611 3.98042 4.09431 4.18304 4.23037 4.30974 4.36665 4.51138 4.53997 4.62045 4.65293 4.72253 4.86449 4.88058 4.91780 5.00533 5.02514 5.14901 5.22844 5.37095 5.43552 5.51571 5.56930 5.66523 6.29429 6.69030 6.73984 7.12421 7.29813 8.89283 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045301 B = 0.003941 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.937280 B = 7102.309194 C = 7616.975095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.236 1.236 7 C -0.542 4.542 8 H 0.018 0.982 9 C -0.007 4.007 10 C -0.081 4.081 11 C -0.121 4.121 12 C 0.535 3.465 13 O -0.594 6.594 14 N -0.659 5.659 15 C 0.106 3.894 16 C -0.075 4.075 17 C -0.144 4.144 18 C -0.182 4.182 19 C -0.171 4.171 20 C 0.099 3.901 21 H 0.267 0.733 22 H 0.031 0.969 23 H 0.030 0.970 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.369 -5.527 0.757 30.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.159 1.159 7 C -0.580 4.580 8 H 0.037 0.963 9 C -0.045 4.045 10 C -0.119 4.119 11 C -0.160 4.160 12 C 0.327 3.673 13 O -0.475 6.475 14 N -0.394 5.394 15 C -0.015 4.015 16 C -0.094 4.094 17 C -0.163 4.163 18 C -0.219 4.219 19 C -0.208 4.208 20 C -0.023 4.023 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 29.571 -5.867 0.762 30.157 hybrid contribution -0.816 0.201 -0.065 0.843 sum 28.755 -5.666 0.697 29.316 Atomic orbital electron populations 1.70108 1.08713 1.28352 1.52609 1.26215 0.95771 1.04185 0.93764 0.85474 0.79641 0.76929 0.79454 1.18805 1.21073 1.15883 1.21550 0.92655 0.92892 1.50889 0.96314 1.19529 0.93528 0.94038 0.97363 1.21062 0.93231 0.97388 1.00245 1.21632 0.96221 0.92088 1.06099 1.20824 0.80058 0.92068 0.74351 1.90677 1.55707 1.48500 1.52605 1.49822 1.03635 1.13157 1.72790 1.23372 0.79368 0.96396 1.02405 1.22454 0.91732 0.95270 0.99978 1.22071 0.88886 1.06364 0.98978 1.23054 1.02445 0.95891 1.00501 1.23016 0.99865 0.94360 1.03562 1.23209 0.87503 0.90124 1.01498 0.92438 0.95051 0.95196 0.94565 0.94578 0.86791 0.86875 0.87535 0.88746 0.87855 0.86510 0.88896 0.88073 0.87792 0.88422 0.91995 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.50 13.96 21.45 0.30 -62.20 16 2 C 0.00 -0.21 5.47 84.65 0.46 0.25 16 3 Si 0.96 44.31 27.47 68.60 1.88 46.20 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 7 C -0.54 -33.23 9.66 25.60 0.25 -32.98 16 8 H 0.02 1.29 7.99 -2.91 -0.02 1.26 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.08 -3.55 4.44 30.60 0.14 -3.42 16 11 C -0.12 -3.80 5.53 29.85 0.17 -3.63 16 12 C 0.54 18.06 8.08 87.66 0.71 18.77 16 13 O -0.59 -26.36 16.76 -3.03 -0.05 -26.41 16 14 N -0.66 -15.75 3.69 -857.67 -3.16 -18.91 16 15 C 0.11 1.44 8.01 83.28 0.67 2.11 16 16 C -0.08 -0.92 4.17 -10.36 -0.04 -0.96 16 17 C -0.14 -1.25 5.47 -10.79 -0.06 -1.31 16 18 C -0.18 -1.53 10.25 30.62 0.31 -1.21 16 19 C -0.17 -1.28 10.25 30.61 0.31 -0.97 16 20 C 0.10 1.82 8.19 83.19 0.68 2.50 16 21 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 22 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 23 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 24 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 25 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 26 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.11 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -79.58 311.08 3.65 -75.93 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.96 Total: 6.45 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 3.71 Total: -21.07 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.86 Total: -81.10 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -79.58 3.65 -75.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594362129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.220 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds