Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46504 * 119.99858 * 359.97438 * 14 12 2 16 16 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 17 17 C 1.50703 * 109.47468 * 89.99360 * 16 14 12 18 18 N 1.30496 * 125.65062 * 275.03163 * 17 16 14 19 19 C 1.34129 * 109.25466 * 179.97438 * 18 17 16 20 20 C 1.34662 * 108.02066 * 0.02562 * 19 18 17 21 21 N 1.35047 * 125.64810 * 94.72051 * 17 16 14 22 22 H 0.96996 * 126.39127 * 359.97438 * 21 17 16 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46944 * 90.00712 * 15 14 12 28 28 H 1.09001 * 109.47272 * 209.99997 * 15 14 12 29 29 H 1.08996 * 109.47264 * 330.00264 * 15 14 12 30 30 H 1.08997 * 109.47484 * 209.99674 * 16 14 12 31 31 H 1.09004 * 109.47079 * 329.99531 * 16 14 12 32 32 H 1.08006 * 125.99158 * 180.02562 * 19 18 17 33 33 H 1.08005 * 126.59426 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 0.8649 0.9415 2.5890 16 6 2.1955 -0.9402 3.6508 17 6 3.5229 -0.3562 4.0607 18 7 4.6870 -0.7064 3.5861 19 6 5.6439 0.0229 4.1790 20 6 5.0503 0.8562 5.0545 21 7 3.7043 0.6203 4.9757 22 1 3.0104 1.0693 5.4834 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 -0.1832 0.6439 2.6222 28 1 1.1227 1.4667 3.5086 29 1 1.0288 1.6002 1.7362 30 1 1.4776 -0.8150 4.4614 31 1 2.3169 -2.0015 3.4337 32 1 6.7047 -0.0462 3.9877 33 1 5.5414 1.5756 5.6931 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597178268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = 31.862469 kcal Electronic energy + Delta-G solvation = -16982.852624 eV Core-core repulsion = 14238.210072 eV Total energy + Delta-G solvation = -2744.642552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.86427 -38.95063 -34.92535 -33.79625 -32.33193 -31.16017 -29.63144 -26.93219 -25.59898 -25.01388 -22.09873 -21.43443 -20.40448 -18.78767 -17.68959 -16.29545 -15.79751 -15.56132 -14.76461 -14.51955 -14.22476 -14.00991 -13.56920 -13.13576 -12.88111 -12.62665 -12.18403 -12.09570 -11.64949 -11.16590 -10.91897 -10.67708 -10.41858 -10.19310 -9.89575 -9.86642 -9.72614 -8.90936 -8.65083 -8.35356 -8.18772 -8.10424 -5.97006 -3.99217 2.09473 3.14685 3.25448 3.41989 3.43248 3.50279 3.80860 3.89547 4.53044 4.61387 5.04024 5.18341 5.36182 5.38786 5.48435 5.67437 5.79039 5.85954 6.03886 6.15218 6.23998 6.68786 6.87004 6.88005 6.96286 7.08643 7.44048 7.51636 7.79546 8.01023 8.14968 8.33276 8.44763 9.09671 9.30386 9.65896 11.10727 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033911 B = 0.006658 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.481581 B = 4204.241488 C = 4619.426723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.034 3.966 3 H 0.049 0.951 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.899 5.899 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.520 3.480 13 O -0.521 6.521 14 N -0.630 5.630 15 C 0.087 3.913 16 C 0.199 3.801 17 C 0.197 3.803 18 N -0.462 5.462 19 C -0.029 4.029 20 C -0.065 4.065 21 N -0.568 5.568 22 H 0.414 0.586 23 H 0.091 0.909 24 H 0.024 0.976 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.167 0.833 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 3.707 16.100 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.067 0.933 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.539 5.539 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.394 6.394 14 N -0.367 5.367 15 C -0.056 4.056 16 C 0.073 3.927 17 C -0.069 4.069 18 N -0.181 5.181 19 C -0.178 4.178 20 C -0.199 4.199 21 N -0.172 5.172 22 H 0.251 0.749 23 H 0.110 0.890 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.184 0.816 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.692 2.636 15.225 15.467 hybrid contribution -0.003 0.756 0.171 0.775 sum 0.689 3.392 15.396 15.780 Atomic orbital electron populations 1.21982 0.96616 0.99995 1.01511 1.18827 0.94153 0.96542 0.89206 0.93304 1.21141 1.30722 1.12781 0.89016 0.90800 1.24934 0.95155 0.95095 0.99060 1.69865 1.37333 1.23173 1.23513 0.86512 0.79350 0.79723 0.81605 1.20175 1.21439 1.20189 1.22068 0.78334 0.84475 0.83993 1.90572 1.36475 1.26489 1.85835 1.48215 1.52870 1.30155 1.05462 1.21858 0.94256 0.87656 1.01862 1.19532 0.86382 0.98511 0.88252 1.24077 0.97691 0.92535 0.92574 1.70416 0.97751 1.25864 1.24039 1.22438 0.99559 0.97699 0.98138 1.22683 0.83329 1.06602 1.07244 1.43362 1.08235 1.31535 1.34034 0.74889 0.89020 0.95731 0.95139 0.93018 0.92432 0.93408 0.89992 0.89886 0.87152 0.81607 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.61 37.16 0.32 -2.97 16 2 C 0.03 0.86 1.83 -92.92 -0.17 0.69 16 3 H 0.05 1.31 7.40 -51.93 -0.38 0.92 16 4 C -0.50 -14.59 8.37 -34.44 -0.29 -14.88 16 5 H 0.07 2.30 6.75 -52.49 -0.35 1.94 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.52 12.36 7.07 -10.98 -0.08 12.28 16 13 O -0.52 -14.23 15.04 5.56 0.08 -14.14 16 14 N -0.63 -11.32 2.86 -182.95 -0.52 -11.84 16 15 C 0.09 1.22 8.80 59.85 0.53 1.75 16 16 C 0.20 3.03 6.03 -5.19 -0.03 3.00 16 17 C 0.20 3.13 7.73 -155.41 -1.20 1.93 16 18 N -0.46 -8.84 11.25 -10.81 -0.12 -8.96 16 19 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 16 20 C -0.06 -0.75 12.04 -16.57 -0.20 -0.95 16 21 N -0.57 -6.58 6.15 -10.23 -0.06 -6.64 16 22 H 0.41 3.16 8.96 -40.82 -0.37 2.80 16 23 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 24 H 0.02 0.45 4.53 -51.93 -0.24 0.22 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.06 0.73 6.95 -51.93 -0.36 0.37 16 28 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 29 H 0.08 1.30 6.01 -51.93 -0.31 0.99 16 30 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.11 1.90 7.42 -51.93 -0.39 1.52 16 32 H 0.17 2.12 8.06 -52.48 -0.42 1.69 16 33 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 277.94 15.07 4.19 4.19 Total: -1.00 -35.68 277.94 -6.21 -41.90 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.96 Total: 1.36 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.43 Total: 1.74 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.08 Total: -52.46 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.08 Total: -14.14 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -35.68 -6.21 -41.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597178268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.758 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds