Wall clock time and date at job start Mon Mar 30 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46504 * 119.99858 * 359.97438 * 14 12 2 16 16 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 17 17 C 1.50703 * 109.47468 * 89.99360 * 16 14 12 18 18 N 1.30496 * 125.65062 * 275.03163 * 17 16 14 19 19 C 1.34129 * 109.25466 * 179.97438 * 18 17 16 20 20 C 1.34662 * 108.02066 * 0.02562 * 19 18 17 21 21 N 1.35047 * 125.64810 * 94.72051 * 17 16 14 22 22 H 0.96996 * 126.39127 * 359.97438 * 21 17 16 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46944 * 90.00712 * 15 14 12 28 28 H 1.09001 * 109.47272 * 209.99997 * 15 14 12 29 29 H 1.08996 * 109.47264 * 330.00264 * 15 14 12 30 30 H 1.08997 * 109.47484 * 209.99674 * 16 14 12 31 31 H 1.09004 * 109.47079 * 329.99531 * 16 14 12 32 32 H 1.08006 * 125.99158 * 180.02562 * 19 18 17 33 33 H 1.08005 * 126.59426 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 0.8649 0.9415 2.5890 16 6 2.1955 -0.9402 3.6508 17 6 3.5229 -0.3562 4.0607 18 7 4.6870 -0.7064 3.5861 19 6 5.6439 0.0229 4.1790 20 6 5.0503 0.8562 5.0545 21 7 3.7043 0.6203 4.9757 22 1 3.0104 1.0693 5.4834 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 -0.1832 0.6439 2.6222 28 1 1.1227 1.4667 3.5086 29 1 1.0288 1.6002 1.7362 30 1 1.4776 -0.8150 4.4614 31 1 2.3169 -2.0015 3.4337 32 1 6.7047 -0.0462 3.9877 33 1 5.5414 1.5756 5.6931 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597178268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:16 Heat of formation + Delta-G solvation = 5.551133 kcal Electronic energy + Delta-G solvation = -16983.993569 eV Core-core repulsion = 14238.210072 eV Total energy + Delta-G solvation = -2745.783497 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.93679 -40.65354 -36.51504 -35.84358 -33.43098 -32.91729 -31.09105 -28.17065 -27.09694 -27.00617 -23.87076 -22.50393 -21.58977 -20.34383 -18.83520 -18.32884 -17.48100 -17.20129 -16.48287 -16.02559 -15.59551 -15.10891 -14.86676 -14.59923 -14.50351 -14.04767 -13.85659 -13.48494 -13.08899 -12.95048 -12.81291 -12.66995 -12.20144 -12.16936 -11.99176 -11.01331 -10.99216 -10.86784 -10.59617 -10.25542 -9.67462 -9.33430 -8.15066 -6.24855 1.04835 1.38937 1.41188 1.49860 1.91166 2.05460 2.31203 2.41792 2.60391 3.13945 3.54535 3.98811 4.24846 4.30274 4.42767 4.47169 4.62507 4.74232 4.74622 4.83642 4.92338 5.01994 5.10804 5.14126 5.50504 5.67745 5.76211 5.82664 5.95983 6.22422 6.55985 6.61091 6.83154 7.27085 7.40876 7.55894 8.90453 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033911 B = 0.006658 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.481581 B = 4204.241488 C = 4619.426723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.031 3.969 3 H 0.033 0.967 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.270 1.270 11 H -0.280 1.280 12 C 0.517 3.483 13 O -0.572 6.572 14 N -0.619 5.619 15 C 0.077 3.923 16 C 0.199 3.801 17 C 0.175 3.825 18 N -0.529 5.529 19 C -0.077 4.077 20 C -0.025 4.025 21 N -0.545 5.545 22 H 0.437 0.563 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.019 0.981 26 H 0.265 0.735 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.173 0.827 33 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 5.450 18.285 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 H 0.050 0.950 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.195 1.195 11 H -0.206 1.206 12 C 0.308 3.692 13 O -0.449 6.449 14 N -0.354 5.354 15 C -0.064 4.064 16 C 0.074 3.926 17 C -0.090 4.090 18 N -0.249 5.249 19 C -0.225 4.225 20 C -0.161 4.161 21 N -0.151 5.151 22 H 0.278 0.722 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.099 0.901 32 H 0.191 0.809 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.302 4.436 17.468 18.025 hybrid contribution 0.333 0.292 -0.398 0.595 sum 0.031 4.727 17.070 17.712 Atomic orbital electron populations 1.21797 0.94641 0.99523 1.02578 1.18721 0.95696 0.95198 0.89413 0.94967 1.21292 1.31519 1.12717 0.91471 0.93875 1.25559 0.95205 0.95790 1.01256 1.69935 1.37196 1.23454 1.24317 0.85697 0.78504 0.78915 0.79036 1.20052 1.19491 1.20626 1.21673 0.78074 0.83871 0.85620 1.90543 1.38783 1.28633 1.86947 1.48032 1.52076 1.30764 1.04520 1.22129 0.94817 0.86075 1.03405 1.19746 0.87866 0.96615 0.88326 1.23866 0.96880 0.94182 0.94111 1.70298 0.99941 1.28317 1.26379 1.22817 0.99967 0.99466 1.00204 1.23330 0.82923 1.04799 1.05036 1.43224 1.09005 1.30108 1.32762 0.72150 0.91364 0.91166 0.96188 0.92568 0.90141 0.88667 0.92026 0.84030 0.90127 0.80947 0.76056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.61 71.98 0.62 -5.24 16 2 C 0.03 1.62 1.83 -12.28 -0.02 1.60 16 3 H 0.03 1.78 7.40 -2.39 -0.02 1.77 16 4 C -0.53 -32.41 8.37 25.60 0.21 -32.19 16 5 H 0.04 2.84 6.75 -2.91 -0.02 2.82 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -52.26 11.32 21.45 0.24 -52.02 16 8 Si 0.95 46.73 29.54 68.60 2.03 48.76 16 9 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 12 C 0.52 25.19 7.07 87.66 0.62 25.81 16 13 O -0.57 -32.90 15.04 -3.03 -0.05 -32.95 16 14 N -0.62 -21.43 2.86 -851.12 -2.43 -23.87 16 15 C 0.08 1.91 8.80 127.77 1.12 3.03 16 16 C 0.20 5.73 6.03 85.63 0.52 6.24 16 17 C 0.18 5.31 7.73 138.13 1.07 6.37 16 18 N -0.53 -20.53 11.25 -188.13 -2.12 -22.64 16 19 C -0.08 -2.28 11.87 83.52 0.99 -1.29 16 20 C -0.03 -0.50 12.04 83.09 1.00 0.50 16 21 N -0.55 -10.55 6.15 -186.27 -1.15 -11.69 16 22 H 0.44 4.29 8.96 -92.71 -0.83 3.46 16 23 H 0.07 3.46 6.07 -2.39 -0.01 3.45 16 24 H 0.07 2.50 4.53 -2.39 -0.01 2.49 16 25 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.08 1.67 6.95 -2.39 -0.02 1.65 16 28 H 0.09 1.49 8.07 -2.39 -0.02 1.47 16 29 H 0.06 1.82 6.01 -2.39 -0.01 1.81 16 30 H 0.14 2.33 8.07 -2.39 -0.02 2.31 16 31 H 0.08 2.83 7.42 -2.38 -0.02 2.81 16 32 H 0.17 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.22 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -83.78 277.94 3.41 -80.36 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.30 Total: 7.54 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.58 Total: 6.51 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -5.45 Total: -110.22 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -83.78 3.41 -80.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597178268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.916 kcal (2) G-P(sol) polarization free energy of solvation -83.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds