Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99733 * 2 1 4 4 H 1.48497 * 109.47074 * 240.00242 * 3 2 1 5 5 H 1.48504 * 109.46760 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47086 * 119.99955 * 3 2 1 7 7 C 1.37874 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00448 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99918 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47367 * 180.02562 * 9 7 2 11 11 C 1.46847 * 111.00190 * 66.04409 * 10 9 7 12 12 C 1.53034 * 109.52571 * 174.16319 * 11 10 9 13 13 C 1.53119 * 109.27983 * 59.17905 * 12 11 10 14 14 C 1.53114 * 109.16106 * 302.34946 * 13 12 11 15 15 H 1.09007 * 109.50484 * 297.67264 * 14 13 12 16 16 C 1.50696 * 109.50430 * 177.59769 * 14 13 12 17 17 N 1.33324 * 126.54691 * 300.01864 * 16 14 13 18 18 N 1.28995 * 107.35213 * 179.73916 * 17 16 14 19 19 N 1.28780 * 108.72938 * 0.02562 * 18 17 16 20 20 H 0.96995 * 125.44835 * 180.02562 * 19 18 17 21 21 N 1.28884 * 109.10354 * 359.97438 * 19 18 17 22 22 C 1.46851 * 111.00006 * 301.83549 * 10 9 7 23 23 H 0.96996 * 120.00171 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47118 * 59.99624 * 9 7 2 25 25 H 1.09001 * 109.46695 * 300.00378 * 9 7 2 26 26 H 1.09000 * 109.46191 * 54.14379 * 11 10 9 27 27 H 1.09005 * 109.46464 * 294.17904 * 11 10 9 28 28 H 1.09004 * 109.50293 * 299.23587 * 12 11 10 29 29 H 1.09003 * 109.50372 * 179.11973 * 12 11 10 30 30 H 1.08999 * 109.52175 * 182.44081 * 13 12 11 31 31 H 1.09000 * 109.51805 * 62.25029 * 13 12 11 32 32 H 1.09006 * 109.46132 * 65.82152 * 22 10 9 33 33 H 1.08998 * 109.46250 * 305.85854 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 2.9709 -3.6539 1.2523 12 6 3.8473 -4.9082 1.2783 13 6 4.7982 -4.8855 0.0783 14 6 3.9777 -4.7967 -1.2114 15 1 3.3483 -5.6819 -1.3041 16 6 4.9074 -4.7144 -2.3945 17 7 5.8185 -3.7685 -2.6240 18 7 6.4071 -4.0623 -3.7336 19 7 5.8961 -5.1496 -4.1974 20 1 6.1602 -5.5887 -5.0210 21 7 4.9785 -5.5617 -3.3916 22 6 3.0975 -3.5457 -1.1653 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8902 25 1 0.6249 -2.5570 0.8897 26 1 2.2829 -3.6740 2.0975 27 1 3.6026 -2.7681 1.3194 28 1 3.2155 -5.7948 1.2252 29 1 4.4267 -4.9282 2.2013 30 1 5.3944 -5.7979 0.0687 31 1 5.4564 -4.0198 0.1516 32 1 3.7285 -2.6603 -1.0869 33 1 2.5014 -3.4871 -2.0759 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685978491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = 91.537331 kcal Electronic energy + Delta-G solvation = -16996.568000 eV Core-core repulsion = 14286.805896 eV Total energy + Delta-G solvation = -2709.762104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.46415 -39.96374 -36.07203 -35.10692 -34.45387 -33.29828 -31.41203 -28.72227 -25.75992 -25.56328 -25.40971 -23.21421 -22.45645 -20.84802 -19.78193 -18.41714 -18.02285 -17.07605 -16.27879 -16.05336 -15.68504 -15.08019 -14.87757 -14.53564 -14.42193 -13.62833 -13.38188 -13.30187 -12.99727 -12.88275 -12.48654 -12.27995 -12.23651 -12.12068 -12.06537 -11.83274 -11.63274 -11.53089 -11.36140 -10.88919 -10.59631 -9.02506 -8.14823 -6.33918 0.14402 1.04250 1.36483 1.37835 1.45945 1.52577 2.37563 2.78267 3.09949 3.29142 3.50534 3.91432 4.02140 4.13956 4.38473 4.48658 4.57304 4.60765 4.72082 4.93299 4.94480 5.04271 5.11742 5.23050 5.25877 5.33820 5.36118 5.53962 5.69671 5.75846 6.06087 6.25539 6.54983 6.86808 7.23274 7.37387 8.87223 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.024594 B = 0.007329 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.193734 B = 3819.371807 C = 4434.204098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.200 3.800 10 N -0.535 5.535 11 C 0.056 3.944 12 C -0.102 4.102 13 C -0.102 4.102 14 C 0.018 3.982 15 H 0.116 0.884 16 C 0.181 3.819 17 N -0.303 5.303 18 N -0.065 5.065 19 N -0.205 5.205 20 H 0.492 0.508 21 N -0.299 5.299 22 C 0.084 3.916 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.012 0.988 26 H 0.063 0.937 27 H 0.017 0.983 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.024 0.976 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.645 -12.727 -4.423 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.596 4.596 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.258 5.258 11 C -0.072 4.072 12 C -0.140 4.140 13 C -0.140 4.140 14 C -0.004 4.004 15 H 0.134 0.866 16 C -0.102 4.102 17 N -0.175 5.175 18 N -0.060 5.060 19 N -0.056 5.056 20 H 0.351 0.649 21 N -0.151 5.151 22 C -0.046 4.046 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.030 0.970 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.683 -12.784 -4.801 17.971 hybrid contribution 0.215 1.650 -0.429 1.718 sum 11.898 -11.134 -5.229 17.114 Atomic orbital electron populations 1.70044 1.07415 1.27894 1.51125 1.25758 0.95583 1.02629 0.94593 0.85712 0.78533 0.79204 0.78907 1.20016 1.20437 1.19305 1.21983 0.93378 0.93103 1.51169 0.92690 1.19408 0.91107 0.86519 0.95597 1.62354 1.17166 1.44089 1.02207 1.22026 0.95886 0.97293 0.91989 1.21561 0.96981 0.97454 0.97990 1.21556 0.97451 1.02740 0.92302 1.19603 0.92543 1.00336 0.87929 0.86603 1.25739 0.98179 0.88818 0.97473 1.75906 1.09200 1.24072 1.08275 1.78885 1.19187 1.01966 1.05927 1.47819 1.21151 1.15939 1.20642 0.64899 1.74687 1.11029 1.26021 1.03394 1.21658 0.93884 0.95162 0.93857 0.92581 0.97806 0.96983 0.91841 0.96501 0.89955 0.89170 0.89471 0.92547 0.95764 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 2 C 0.01 0.80 5.46 84.65 0.46 1.26 16 3 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.56 -31.58 7.74 25.60 0.20 -31.38 16 8 H 0.05 3.11 5.84 -2.91 -0.02 3.09 16 9 C 0.20 10.68 5.13 85.56 0.44 11.12 16 10 N -0.53 -22.93 4.86 -900.93 -4.38 -27.30 16 11 C 0.06 2.11 5.13 86.32 0.44 2.55 16 12 C -0.10 -2.72 6.09 30.65 0.19 -2.54 16 13 C -0.10 -2.72 5.27 30.67 0.16 -2.56 16 14 C 0.02 0.54 2.82 -11.49 -0.03 0.51 16 15 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 16 C 0.18 5.46 6.88 138.55 0.95 6.41 16 17 N -0.30 -9.92 12.50 -51.26 -0.64 -10.56 16 18 N -0.06 -1.72 13.48 37.02 0.50 -1.23 16 19 N -0.20 -4.01 7.91 37.00 0.29 -3.72 16 20 H 0.49 4.15 8.96 -347.68 -3.12 1.03 16 21 N -0.30 -7.52 12.36 -51.20 -0.63 -8.15 16 22 C 0.08 3.38 4.28 86.32 0.37 3.75 16 23 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 24 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.01 0.68 8.06 -2.39 -0.02 0.66 16 26 H 0.06 2.39 8.06 -2.39 -0.02 2.37 16 27 H 0.02 0.70 7.03 -2.38 -0.02 0.68 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.02 1.11 6.57 -2.38 -0.02 1.09 16 33 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 Total: -1.00 -68.59 273.87 -1.36 -69.94 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -1.99 Total: 0.24 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 3.18 Total: -10.87 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -4.57 Total: -106.45 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.59 -1.36 -69.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685978491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.480 kcal (2) G-P(sol) polarization free energy of solvation -68.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds