Wall clock time and date at job start Mon Mar 30 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99987 * 2 1 4 4 H 1.48501 * 109.46730 * 269.99712 * 3 2 1 5 5 H 1.48502 * 109.46941 * 29.99409 * 3 2 1 6 6 H 1.48499 * 109.47101 * 149.99600 * 3 2 1 7 7 C 1.37879 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99792 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00043 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.83104 * 59.45098 * 9 7 2 11 11 C 1.54467 * 109.91515 * 180.39564 * 9 7 2 12 12 C 1.55471 * 102.34595 * 140.90028 * 11 9 7 13 13 C 1.54009 * 100.82210 * 326.83851 * 12 11 9 14 14 C 1.53680 * 110.47963 * 156.26964 * 13 12 11 15 15 C 1.55142 * 102.69679 * 141.58913 * 14 13 12 16 16 N 1.48627 * 103.33673 * 323.33716 * 15 14 13 17 17 C 1.46908 * 110.99738 * 159.19916 * 16 15 14 18 18 C 1.53001 * 117.49692 * 126.18710 * 17 16 15 19 19 C 1.52993 * 117.49681 * 57.56494 * 17 16 15 20 20 C 1.48161 * 105.85460 * 38.66780 * 16 15 14 21 21 O 1.42565 * 106.39238 * 35.22036 * 13 12 11 22 22 H 0.96998 * 120.00440 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.83392 * 259.11552 * 11 9 7 24 24 H 1.08994 * 110.83120 * 22.48683 * 11 9 7 25 25 H 1.09003 * 111.14719 * 208.94760 * 12 11 9 26 26 H 1.09003 * 111.14979 * 84.72594 * 12 11 9 27 27 H 1.09007 * 110.76713 * 259.88518 * 14 13 12 28 28 H 1.09000 * 110.76976 * 23.09453 * 14 13 12 29 29 H 1.08997 * 110.64782 * 81.80107 * 15 14 13 30 30 H 1.08996 * 110.64618 * 204.71175 * 15 14 13 31 31 H 1.08999 * 115.55038 * 271.89387 * 17 16 15 32 32 H 1.08998 * 117.50032 * 359.97438 * 18 17 16 33 33 H 1.08996 * 117.49481 * 145.02242 * 18 17 16 34 34 H 1.09002 * 117.49935 * 214.97798 * 19 17 16 35 35 H 1.09002 * 117.50536 * 0.02562 * 19 17 16 36 36 H 1.08997 * 110.01168 * 215.54888 * 20 16 15 37 37 H 1.08999 * 110.01417 * 94.16911 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8810 -0.6726 0.8842 11 6 4.0377 -2.6462 -0.0084 12 6 5.2595 -2.5508 -0.9651 13 6 4.7725 -1.4708 -1.9492 14 6 5.9681 -0.7772 -2.6210 15 6 5.4703 -0.5731 -4.0761 16 7 4.6752 -1.8004 -4.3418 17 6 3.7339 -1.5883 -5.4496 18 6 3.7801 -2.5784 -6.6151 19 6 4.3150 -1.1566 -6.7974 20 6 3.9541 -2.0962 -3.0817 21 8 3.9989 -0.5492 -1.1846 22 1 -0.4851 0.8400 -0.0004 23 1 4.3503 -2.9519 0.9901 24 1 3.2850 -3.3287 -0.4029 25 1 5.4341 -3.4980 -1.4756 26 1 6.1520 -2.2233 -0.4319 27 1 6.1758 0.1815 -2.1456 28 1 6.8498 -1.4176 -2.5973 29 1 4.8418 0.3147 -4.1464 30 1 6.3127 -0.5016 -4.7640 31 1 2.7606 -1.1857 -5.1690 32 1 4.5090 -3.3869 -6.5602 33 1 2.8369 -2.8274 -7.1015 34 1 3.7239 -0.4704 -7.4038 35 1 5.3958 -1.0304 -6.8624 36 1 3.8811 -3.1742 -2.9379 37 1 2.9578 -1.6549 -3.1096 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686226923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:40 Heat of formation + Delta-G solvation = -10.387869 kcal Electronic energy + Delta-G solvation = -17814.145978 eV Core-core repulsion = 15171.211658 eV Total energy + Delta-G solvation = -2642.934320 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79037 -37.66553 -35.01938 -32.46193 -31.30595 -29.92278 -28.65193 -26.01415 -23.06204 -22.50256 -21.71413 -20.50631 -19.92733 -19.29262 -16.82585 -16.38422 -15.87909 -15.14054 -14.52705 -14.08283 -13.79942 -13.62254 -12.97977 -12.77671 -12.60039 -12.24846 -12.00039 -11.65673 -11.47747 -11.32133 -11.08339 -10.98985 -10.69942 -10.46829 -10.34785 -10.04559 -9.99927 -9.74999 -9.67475 -9.44540 -8.61004 -8.31955 -8.04491 -6.10036 -4.18228 3.40474 3.46330 3.56454 3.86491 4.09836 4.48852 4.65126 4.96980 5.01945 5.05905 5.21128 5.28769 5.39977 5.43209 5.56934 5.65546 5.68136 5.79017 5.84122 5.98378 6.04091 6.08906 6.19452 6.23356 6.26933 6.31144 6.39418 6.40602 6.51275 6.63091 6.76624 7.08186 7.29979 7.37029 7.64047 8.27832 8.46059 8.91130 9.54541 11.00650 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.008799 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.428188 B = 3181.312703 C = 3532.885927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.083 3.917 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.076 0.924 9 C 0.165 3.835 10 H 0.042 0.958 11 C -0.135 4.135 12 C -0.142 4.142 13 C 0.104 3.896 14 C -0.121 4.121 15 C 0.041 3.959 16 N -0.491 5.491 17 C 0.000 4.000 18 C -0.164 4.164 19 C -0.179 4.179 20 C 0.033 3.967 21 O -0.378 6.378 22 H 0.264 0.736 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.085 -3.035 -8.796 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.121 4.121 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.094 0.906 9 C 0.110 3.890 10 H 0.060 0.940 11 C -0.173 4.173 12 C -0.180 4.180 13 C 0.063 3.937 14 C -0.159 4.159 15 C -0.087 4.087 16 N -0.215 5.215 17 C -0.109 4.109 18 C -0.202 4.202 19 C -0.216 4.216 20 C -0.095 4.095 21 O -0.298 6.298 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.213 -3.156 -8.983 14.710 hybrid contribution -0.312 1.330 0.206 1.382 sum 10.901 -1.826 -8.777 14.114 Atomic orbital electron populations 1.69941 1.06563 1.27287 1.49496 1.25035 0.94625 0.99755 0.92698 0.86415 0.79668 0.82336 0.78674 1.20236 1.22691 1.19000 1.21297 0.88608 0.94637 1.51939 0.90606 1.20936 0.94907 0.88672 0.84488 0.94048 1.23075 0.96082 0.99566 0.98533 1.23154 0.98577 0.98652 0.97573 1.22065 0.90171 0.89687 0.91774 1.22583 0.97283 1.01359 0.94651 1.23147 0.97121 0.91983 0.96404 1.64699 1.21029 1.31787 1.04031 1.22713 0.96629 1.04121 0.87456 1.23002 1.02608 0.93217 1.01334 1.23007 1.01154 0.98317 0.99171 1.23250 0.97575 1.00913 0.87722 1.88382 1.68465 1.36605 1.36399 0.92619 0.91893 0.90972 0.90882 0.91376 0.90390 0.90422 0.93418 0.90742 0.88905 0.88389 0.89010 0.88998 0.88657 0.90275 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 2 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.90 23.37 26.28 -169.99 -4.47 18.91 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.70 6.53 56.52 0.37 -6.33 16 7 C -0.53 -14.97 9.33 -34.44 -0.32 -15.30 16 8 H 0.08 2.30 7.77 -52.49 -0.41 1.89 16 9 C 0.16 3.97 2.83 -27.12 -0.08 3.89 16 10 H 0.04 1.03 7.18 -51.93 -0.37 0.65 16 11 C -0.13 -2.64 6.43 -24.65 -0.16 -2.80 16 12 C -0.14 -2.38 5.79 -24.89 -0.14 -2.53 16 13 C 0.10 1.96 1.07 -89.70 -0.10 1.87 16 14 C -0.12 -1.93 6.35 -25.24 -0.16 -2.09 16 15 C 0.04 0.63 6.04 -1.73 -0.01 0.62 16 16 N -0.49 -7.97 5.45 -222.64 -1.21 -9.18 16 17 C 0.00 0.00 5.24 -67.71 -0.35 -0.35 16 18 C -0.16 -2.03 10.46 -26.73 -0.28 -2.31 16 19 C -0.18 -2.17 9.90 -26.73 -0.26 -2.43 16 20 C 0.03 0.62 6.08 -3.08 -0.02 0.60 16 21 O -0.38 -8.92 8.21 -35.23 -0.29 -9.21 16 22 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.07 1.45 7.66 -51.93 -0.40 1.06 16 25 H 0.07 1.09 7.70 -51.93 -0.40 0.69 16 26 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 27 H 0.08 1.26 8.08 -51.92 -0.42 0.84 16 28 H 0.08 1.08 7.87 -51.93 -0.41 0.67 16 29 H 0.05 0.80 8.01 -51.93 -0.42 0.39 16 30 H 0.07 0.98 7.97 -51.93 -0.41 0.57 16 31 H 0.09 1.53 7.64 -51.93 -0.40 1.14 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 36 H 0.08 1.41 7.45 -51.93 -0.39 1.03 16 37 H 0.07 1.47 7.34 -51.93 -0.38 1.08 16 LS Contribution 291.12 15.07 4.39 4.39 Total: -1.00 -30.68 291.12 -8.88 -39.56 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.09 Total: 0.86 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.98 Total: -18.48 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.44 Total: -36.03 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.29 Total: -9.21 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.47 Total: 18.91 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.68 -8.88 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686226923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.177 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds