Wall clock time and date at job start Mon Mar 30 2020 03:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35761 * 117.00046 * 2 1 4 4 N 1.32264 * 120.11418 * 0.34229 * 3 2 1 5 5 C 1.32419 * 120.01435 * 180.29274 * 4 3 2 6 6 C 1.37958 * 120.25629 * 359.66575 * 5 4 3 7 7 N 1.32388 * 120.23877 * 359.97438 * 6 5 4 8 8 C 1.32469 * 119.97157 * 0.02603 * 7 6 5 9 9 N 1.39182 * 120.12000 * 180.02562 * 8 7 6 10 10 C 1.46906 * 110.99737 * 110.50351 * 9 8 7 11 11 C 1.46897 * 111.00463 * 346.54367 * 9 8 7 12 12 H 1.08990 * 109.47222 * 312.17672 * 11 9 8 13 13 C 1.53001 * 109.47110 * 192.17424 * 11 9 8 14 14 C 1.50701 * 109.47088 * 72.17907 * 11 9 8 15 15 H 1.08005 * 119.99470 * 3.90323 * 14 11 9 16 16 C 1.37873 * 120.00143 * 183.63534 * 14 11 9 17 17 N 1.31512 * 120.00001 * 358.26153 * 16 14 11 18 18 Si 1.86802 * 120.00199 * 178.26465 * 16 14 11 19 19 H 1.48499 * 109.47351 * 94.98531 * 18 16 14 20 20 H 1.48492 * 109.47001 * 214.98905 * 18 16 14 21 21 H 1.48505 * 109.46926 * 334.98539 * 18 16 14 22 22 H 1.08999 * 109.47620 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46814 * 299.99181 * 1 2 3 24 24 H 1.09001 * 109.47665 * 59.99336 * 1 2 3 25 25 H 1.07996 * 119.86955 * 179.68591 * 5 4 3 26 26 H 1.08006 * 119.87643 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.46689 * 296.03448 * 10 9 8 28 28 H 1.08993 * 109.47402 * 56.04006 * 10 9 8 29 29 H 1.08998 * 109.46761 * 176.04148 * 10 9 8 30 30 H 1.09001 * 109.47433 * 302.03453 * 13 11 9 31 31 H 1.09003 * 109.46994 * 62.03961 * 13 11 9 32 32 H 1.08999 * 109.47077 * 182.03431 * 13 11 9 33 33 H 0.97000 * 120.00115 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3272 2.3203 0.0068 5 6 1.9304 3.4991 0.0010 6 6 3.3079 3.5751 -0.0053 7 7 4.0366 2.4698 -0.0050 8 6 3.4428 1.2857 0.0008 9 7 4.2059 0.1217 0.0017 10 6 4.0974 -0.5779 1.2889 11 6 5.6088 0.4116 -0.3234 12 1 5.6527 1.0541 -1.2027 13 6 6.3466 -0.8975 -0.6111 14 6 6.2606 1.1099 0.8422 15 1 5.7087 1.2613 1.7582 16 6 7.5631 1.5505 0.7411 17 7 8.2479 1.3312 -0.3600 18 14 8.3552 2.4589 2.1683 19 1 9.1187 1.4979 3.0042 20 1 9.2761 3.4987 1.6432 21 1 7.3003 3.1023 2.9921 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.3417 4.4045 0.0014 26 1 3.7935 4.5398 -0.0097 27 1 4.5173 0.0459 2.0779 28 1 3.0485 -0.7803 1.5052 29 1 4.6460 -1.5184 1.2385 30 1 6.2719 -1.5547 0.2553 31 1 5.8979 -1.3849 -1.4766 32 1 7.3958 -0.6856 -0.8169 33 1 9.1644 1.6409 -0.4309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686307924.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:07 Heat of formation + Delta-G solvation = 37.944159 kcal Electronic energy + Delta-G solvation = -17452.115311 eV Core-core repulsion = 14707.736482 eV Total energy + Delta-G solvation = -2744.378830 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.82186 -37.92850 -37.07965 -33.19974 -32.51356 -30.22315 -28.50454 -27.24762 -25.52464 -25.07452 -23.35171 -22.52666 -19.65175 -17.99518 -17.37120 -16.59003 -16.08333 -15.78814 -14.75981 -14.48106 -14.18945 -13.87223 -13.43075 -13.06867 -12.82673 -12.29744 -11.71564 -11.43503 -11.23509 -11.12942 -10.91761 -10.89156 -10.60040 -10.49535 -10.28307 -10.05849 -9.92793 -9.30106 -8.53009 -8.43587 -8.29617 -7.18658 -5.91411 -3.95729 1.40455 1.73107 3.32300 3.32853 3.39683 3.43410 4.19191 4.47385 4.49545 4.64109 4.97077 5.38501 5.39275 5.40948 5.43872 5.59054 5.71999 5.86585 6.09183 6.35835 6.49773 6.60992 6.87895 7.00239 7.11132 7.31219 7.49511 7.70039 7.78139 7.83985 8.08816 8.25348 8.38881 8.55479 9.02761 9.65930 11.13448 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.008914 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.885895 B = 3140.447919 C = 3660.190761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.289 6.289 3 C 0.254 3.746 4 N -0.494 5.494 5 C 0.032 3.968 6 C 0.027 3.973 7 N -0.396 5.396 8 C 0.284 3.716 9 N -0.473 5.473 10 C 0.039 3.961 11 C 0.212 3.788 12 H 0.049 0.951 13 C -0.131 4.131 14 C -0.504 4.504 15 H 0.054 0.946 16 C 0.067 3.933 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.284 1.284 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.092 0.908 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.160 0.840 26 H 0.162 0.838 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.016 0.984 32 H 0.085 0.915 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 0.424 1.247 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.194 6.194 3 C 0.066 3.934 4 N -0.224 5.224 5 C -0.124 4.124 6 C -0.132 4.132 7 N -0.114 5.114 8 C 0.045 3.955 9 N -0.191 5.191 10 C -0.107 4.107 11 C 0.107 3.893 12 H 0.067 0.933 13 C -0.189 4.189 14 C -0.543 4.543 15 H 0.072 0.928 16 C -0.134 4.134 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.211 1.211 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.110 0.890 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.178 0.822 26 H 0.179 0.821 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.793 -0.170 0.811 11.822 hybrid contribution 0.523 1.336 1.250 1.903 sum -11.269 1.166 2.060 11.515 Atomic orbital electron populations 1.22799 0.78692 1.02478 1.01792 1.86409 1.21443 1.23558 1.87967 1.20546 0.89509 0.85466 0.97924 1.67870 1.39773 0.98509 1.16244 1.23076 0.93874 0.94614 1.00859 1.23548 0.91786 0.98380 0.99478 1.69238 1.36925 0.96890 1.08370 1.20289 0.87613 0.90899 0.96698 1.59894 1.14896 1.15609 1.28743 1.22273 1.00387 0.98944 0.89070 1.19361 0.78794 0.93799 0.97360 0.93275 1.21820 1.03068 0.96729 0.97332 1.21348 0.97367 1.36388 0.99230 0.92797 1.24777 0.97169 0.95904 0.95557 1.69884 1.10224 1.46972 1.26129 0.86656 0.79169 0.79748 0.82797 1.21058 1.21292 1.20219 0.88950 0.92909 0.92795 0.82241 0.82092 0.93591 0.92737 0.90650 0.95218 0.96531 0.89608 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.40 101.05 1.05 1.54 16 2 O -0.29 -5.03 8.88 -18.99 -0.17 -5.20 16 3 C 0.25 4.87 7.25 -16.72 -0.12 4.75 16 4 N -0.49 -8.56 9.40 -12.97 -0.12 -8.68 16 5 C 0.03 0.50 11.20 -17.40 -0.19 0.30 16 6 C 0.03 0.47 11.20 -17.41 -0.20 0.28 16 7 N -0.40 -8.79 7.85 -12.10 -0.10 -8.88 16 8 C 0.28 6.19 5.89 -154.48 -0.91 5.28 16 9 N -0.47 -10.68 4.53 -174.42 -0.79 -11.47 16 10 C 0.04 0.80 8.73 60.07 0.52 1.32 16 11 C 0.21 5.39 1.91 -68.86 -0.13 5.26 16 12 H 0.05 1.41 7.72 -51.93 -0.40 1.01 16 13 C -0.13 -3.17 9.04 37.16 0.34 -2.84 16 14 C -0.50 -13.56 6.29 -34.44 -0.22 -13.77 16 15 H 0.05 1.48 5.96 -52.48 -0.31 1.17 16 16 C 0.07 1.84 5.33 -17.82 -0.09 1.75 16 17 N -0.89 -25.44 11.51 55.43 0.64 -24.80 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 24 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 26 H 0.16 2.32 8.06 -52.48 -0.42 1.90 16 27 H 0.05 0.99 5.96 -51.93 -0.31 0.68 16 28 H 0.05 0.99 6.63 -51.93 -0.34 0.64 16 29 H 0.07 1.45 6.51 -51.93 -0.34 1.11 16 30 H 0.03 0.67 6.54 -51.93 -0.34 0.33 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 2.26 6.25 -51.93 -0.32 1.94 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 272.78 15.07 4.11 4.11 Total: -1.00 -30.68 272.78 -5.44 -36.12 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.04 Total: -1.59 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 0.05 Total: 3.86 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.37 Total: -53.83 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.17 Total: -5.20 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.68 -5.44 -36.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686307924.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.067 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds