Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47391 * 2 1 4 4 C 1.50699 * 109.47309 * 240.00364 * 2 1 3 5 5 H 1.08007 * 119.99867 * 275.02623 * 4 2 1 6 6 C 1.37880 * 120.00332 * 95.02381 * 4 2 1 7 7 N 1.31514 * 120.00034 * 184.87732 * 6 4 2 8 8 Si 1.86801 * 119.99589 * 4.87741 * 6 4 2 9 9 H 1.48494 * 109.47256 * 84.75608 * 8 6 4 10 10 H 1.48500 * 109.46445 * 204.75134 * 8 6 4 11 11 H 1.48491 * 109.47101 * 324.74957 * 8 6 4 12 12 N 1.46901 * 109.47444 * 120.00029 * 2 1 3 13 13 C 1.46894 * 111.00585 * 176.04436 * 12 2 1 14 14 C 1.39566 * 110.99828 * 300.00302 * 12 2 1 15 15 C 1.39461 * 120.85228 * 299.99367 * 14 12 2 16 16 C 1.37852 * 119.25324 * 179.97438 * 15 14 12 17 17 N 1.32086 * 121.01400 * 0.02562 * 16 15 14 18 18 C 1.32308 * 121.87157 * 0.02562 * 17 16 15 19 19 O 1.35807 * 119.68194 * 180.02562 * 18 17 16 20 20 C 1.39099 * 120.63109 * 359.97438 * 18 17 16 21 21 N 1.40382 * 120.52901 * 179.97438 * 20 18 17 22 22 H 1.08996 * 109.46971 * 295.30645 * 1 2 3 23 23 H 1.08996 * 109.47120 * 55.30714 * 1 2 3 24 24 H 1.08993 * 109.46985 * 175.30950 * 1 2 3 25 25 H 0.96995 * 119.99669 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.47391 * 183.95135 * 13 12 2 27 27 H 1.09002 * 109.47375 * 303.95828 * 13 12 2 28 28 H 1.09007 * 109.46914 * 63.95326 * 13 12 2 29 29 H 1.08000 * 120.37229 * 359.70406 * 15 14 12 30 30 H 1.07998 * 119.48987 * 179.97438 * 16 15 14 31 31 H 0.96702 * 113.99819 * 269.97857 * 19 18 17 32 32 H 0.97000 * 119.99379 * 180.02562 * 21 20 18 33 33 H 0.97001 * 120.00642 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1351 -1.7855 -1.2292 6 6 2.3608 0.0123 -2.3579 7 7 2.7072 -0.6129 -3.4619 8 14 2.3136 1.8792 -2.3172 9 1 3.5980 2.3952 -1.7795 10 1 2.1084 2.3992 -3.6930 11 1 1.1969 2.3273 -1.4471 12 7 2.0197 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1871 14 6 1.5722 -0.0597 2.3601 15 6 1.9020 1.2697 2.6224 16 6 1.4418 1.8624 3.7788 17 7 0.6963 1.1907 4.6377 18 6 0.3590 -0.0720 4.4317 19 8 -0.4099 -0.7201 5.3444 20 6 0.7835 -0.7416 3.2888 21 7 0.4248 -2.0815 3.0727 22 1 -0.3633 0.4393 0.9290 23 1 -0.3633 0.5849 -0.8449 24 1 -0.3633 -1.0242 -0.0840 25 1 2.9379 -0.1046 -4.2551 26 1 3.8163 -1.3721 2.0500 27 1 3.8070 -1.2915 0.2719 28 1 3.9192 0.2044 1.2300 29 1 2.5148 1.8273 1.9296 30 1 1.6952 2.8916 3.9860 31 1 0.0951 -1.1720 6.0343 32 1 0.7255 -2.5411 2.2732 33 1 -0.1237 -2.5478 3.7229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695490024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = 7.349979 kcal Electronic energy + Delta-G solvation = -17326.385351 eV Core-core repulsion = 14580.679858 eV Total energy + Delta-G solvation = -2745.705493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40341 -37.76671 -36.19201 -34.35863 -32.70551 -30.59466 -29.65867 -28.32274 -25.66044 -24.52747 -22.73273 -22.13594 -19.88301 -18.01084 -17.61074 -17.07191 -16.38284 -15.76151 -15.00292 -14.90524 -14.37350 -13.93656 -13.70346 -13.18573 -12.79457 -12.56489 -12.39094 -11.97101 -11.55795 -11.44876 -11.11586 -10.95767 -10.78429 -10.58069 -10.39989 -9.90743 -9.31587 -9.23261 -8.88894 -8.66067 -7.69952 -7.27338 -6.20603 -4.20297 1.36976 1.70174 3.17387 3.27858 3.29294 3.74637 4.03087 4.18117 4.29263 4.57278 5.14812 5.18760 5.23867 5.54798 5.74363 5.87201 6.07407 6.15299 6.26290 6.43439 6.52744 6.57544 6.73007 6.76710 6.88059 7.18747 7.40356 7.47876 7.75943 7.79287 8.06440 8.09276 8.27821 8.52657 8.87887 9.41882 10.91790 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036065 B = 0.008001 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.182059 B = 3498.859425 C = 3790.907678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.186 3.814 3 H 0.008 0.992 4 C -0.506 4.506 5 H 0.083 0.917 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.868 3.132 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.499 5.499 13 C 0.044 3.956 14 C 0.089 3.911 15 C -0.167 4.167 16 C 0.062 3.938 17 N -0.476 5.476 18 C 0.220 3.780 19 O -0.479 6.479 20 C 0.178 3.822 21 N -0.853 5.853 22 H 0.021 0.979 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.266 0.734 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.017 0.983 29 H 0.131 0.869 30 H 0.151 0.849 31 H 0.383 0.617 32 H 0.412 0.588 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 0.429 12.991 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.025 0.975 4 C -0.544 4.544 5 H 0.101 0.899 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.695 3.305 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.221 5.221 13 C -0.103 4.103 14 C -0.018 4.018 15 C -0.190 4.190 16 C -0.098 4.098 17 N -0.194 5.194 18 C 0.036 3.964 19 O -0.283 6.283 20 C 0.066 3.934 21 N -0.393 5.393 22 H 0.040 0.960 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.036 0.964 29 H 0.149 0.851 30 H 0.168 0.832 31 H 0.238 0.762 32 H 0.243 0.757 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.921 0.546 13.174 13.324 hybrid contribution 0.855 0.971 -0.670 1.457 sum -1.067 1.517 12.504 12.641 Atomic orbital electron populations 1.21907 0.97629 1.00997 0.98384 1.19837 0.92355 0.92249 0.87435 0.97463 1.20833 1.43698 0.95889 0.94005 0.89940 1.24973 0.94438 0.97991 0.95364 1.69875 1.45621 1.35803 1.01664 0.86992 0.79126 0.86802 0.77541 1.20118 1.21216 1.18961 1.59703 1.10849 1.51714 0.99822 1.22238 0.85894 0.99521 1.02618 1.18819 0.98514 0.91118 0.93377 1.22580 1.01667 0.96053 0.98656 1.21919 0.97050 0.99603 0.91231 1.66954 1.11742 1.07627 1.33081 1.18407 0.99094 0.88699 0.90205 1.84883 1.33616 1.68797 1.41004 1.18763 0.94083 0.86648 0.93866 1.42348 1.59421 1.09443 1.28083 0.95995 0.93365 0.92795 0.92428 0.93526 0.88812 0.96415 0.85140 0.83176 0.76235 0.75652 0.77644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.14 37.16 0.34 -2.49 16 2 C 0.19 4.19 1.51 -68.87 -0.10 4.08 16 3 H 0.01 0.18 4.36 -51.92 -0.23 -0.05 16 4 C -0.51 -13.23 7.39 -34.44 -0.25 -13.49 16 5 H 0.08 2.36 8.05 -52.48 -0.42 1.94 16 6 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 8 Si 0.87 20.62 26.99 -169.99 -4.59 16.03 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.26 -6.13 6.82 56.52 0.39 -5.75 16 12 N -0.50 -9.73 3.89 -172.31 -0.67 -10.41 16 13 C 0.04 0.81 9.13 60.06 0.55 1.36 16 14 C 0.09 1.59 3.27 -83.36 -0.27 1.32 16 15 C -0.17 -2.82 8.68 -39.27 -0.34 -3.16 16 16 C 0.06 0.96 11.16 -17.58 -0.20 0.77 16 17 N -0.48 -7.98 10.38 -13.26 -0.14 -8.12 16 18 C 0.22 3.53 7.76 -17.03 -0.13 3.40 16 19 O -0.48 -6.40 12.83 -19.13 -0.25 -6.64 16 20 C 0.18 2.90 6.83 -83.10 -0.57 2.33 16 21 N -0.85 -11.76 9.10 32.73 0.30 -11.46 16 22 H 0.02 0.44 7.06 -51.93 -0.37 0.08 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 1.92 6.82 -51.93 -0.35 1.56 16 28 H 0.02 0.32 7.42 -51.93 -0.39 -0.07 16 29 H 0.13 2.16 7.18 -52.49 -0.38 1.78 16 30 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.38 3.22 9.06 45.56 0.41 3.63 16 32 H 0.41 6.02 8.22 -40.82 -0.34 5.68 16 33 H 0.40 4.43 8.22 -40.82 -0.34 4.09 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -30.18 275.70 -4.72 -34.90 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -3.23 Total: 10.60 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.08 Total: -3.92 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.26 Total: -55.12 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.25 Total: -6.64 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.59 Total: 16.03 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.18 -4.72 -34.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695490024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.253 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds