Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47391 * 2 1 4 4 C 1.50699 * 109.47309 * 240.00364 * 2 1 3 5 5 H 1.08007 * 119.99867 * 275.02623 * 4 2 1 6 6 C 1.37880 * 120.00332 * 95.02381 * 4 2 1 7 7 N 1.31514 * 120.00034 * 184.87732 * 6 4 2 8 8 Si 1.86801 * 119.99589 * 4.87741 * 6 4 2 9 9 H 1.48494 * 109.47256 * 84.75608 * 8 6 4 10 10 H 1.48500 * 109.46445 * 204.75134 * 8 6 4 11 11 H 1.48491 * 109.47101 * 324.74957 * 8 6 4 12 12 N 1.46901 * 109.47444 * 120.00029 * 2 1 3 13 13 C 1.46894 * 111.00585 * 176.04436 * 12 2 1 14 14 C 1.39566 * 110.99828 * 300.00302 * 12 2 1 15 15 C 1.39461 * 120.85228 * 299.99367 * 14 12 2 16 16 C 1.37852 * 119.25324 * 179.97438 * 15 14 12 17 17 N 1.32086 * 121.01400 * 0.02562 * 16 15 14 18 18 C 1.32308 * 121.87157 * 0.02562 * 17 16 15 19 19 O 1.35807 * 119.68194 * 180.02562 * 18 17 16 20 20 C 1.39099 * 120.63109 * 359.97438 * 18 17 16 21 21 N 1.40382 * 120.52901 * 179.97438 * 20 18 17 22 22 H 1.08996 * 109.46971 * 295.30645 * 1 2 3 23 23 H 1.08996 * 109.47120 * 55.30714 * 1 2 3 24 24 H 1.08993 * 109.46985 * 175.30950 * 1 2 3 25 25 H 0.96995 * 119.99669 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.47391 * 183.95135 * 13 12 2 27 27 H 1.09002 * 109.47375 * 303.95828 * 13 12 2 28 28 H 1.09007 * 109.46914 * 63.95326 * 13 12 2 29 29 H 1.08000 * 120.37229 * 359.70406 * 15 14 12 30 30 H 1.07998 * 119.48987 * 179.97438 * 16 15 14 31 31 H 0.96702 * 113.99819 * 269.97857 * 19 18 17 32 32 H 0.97000 * 119.99379 * 180.02562 * 21 20 18 33 33 H 0.97001 * 120.00642 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1351 -1.7855 -1.2292 6 6 2.3608 0.0123 -2.3579 7 7 2.7072 -0.6129 -3.4619 8 14 2.3136 1.8792 -2.3172 9 1 3.5980 2.3952 -1.7795 10 1 2.1084 2.3992 -3.6930 11 1 1.1969 2.3273 -1.4471 12 7 2.0197 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1871 14 6 1.5722 -0.0597 2.3601 15 6 1.9020 1.2697 2.6224 16 6 1.4418 1.8624 3.7788 17 7 0.6963 1.1907 4.6377 18 6 0.3590 -0.0720 4.4317 19 8 -0.4099 -0.7201 5.3444 20 6 0.7835 -0.7416 3.2888 21 7 0.4248 -2.0815 3.0727 22 1 -0.3633 0.4393 0.9290 23 1 -0.3633 0.5849 -0.8449 24 1 -0.3633 -1.0242 -0.0840 25 1 2.9379 -0.1046 -4.2551 26 1 3.8163 -1.3721 2.0500 27 1 3.8070 -1.2915 0.2719 28 1 3.9192 0.2044 1.2300 29 1 2.5148 1.8273 1.9296 30 1 1.6952 2.8916 3.9860 31 1 0.0951 -1.1720 6.0343 32 1 0.7255 -2.5411 2.2732 33 1 -0.1237 -2.5478 3.7229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695490024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = -18.719786 kcal Electronic energy + Delta-G solvation = -17327.515821 eV Core-core repulsion = 14580.679858 eV Total energy + Delta-G solvation = -2746.835963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66988 -39.14327 -37.43930 -35.63765 -34.58545 -32.28671 -31.08088 -29.54192 -27.47737 -26.13183 -24.06899 -23.48937 -21.47096 -19.33654 -19.20617 -18.45741 -17.74174 -17.15380 -16.64715 -16.12027 -15.76660 -15.52798 -15.07649 -14.72157 -14.55581 -14.14325 -13.86857 -13.36802 -13.12205 -12.92643 -12.68082 -12.59678 -12.22003 -12.19365 -12.09176 -11.84049 -11.25118 -10.78188 -10.49123 -10.13500 -9.26292 -8.44857 -8.30070 -6.33139 0.12090 0.45773 1.30378 1.34719 1.42694 2.31088 2.61089 2.80105 2.91138 3.09028 3.27202 3.96791 4.05031 4.19650 4.43254 4.55928 4.62000 4.70364 4.74044 4.76611 4.83314 5.04429 5.23059 5.25930 5.41250 5.54629 5.61588 6.01248 6.24180 6.37481 6.70109 6.75393 6.83386 7.01745 7.08931 7.32458 8.85774 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036065 B = 0.008001 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.182059 B = 3498.859425 C = 3790.907678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.192 3.808 3 H 0.005 0.995 4 C -0.498 4.498 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.926 3.074 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.252 1.252 12 N -0.498 5.498 13 C 0.048 3.952 14 C 0.064 3.936 15 C -0.173 4.173 16 C 0.064 3.936 17 N -0.489 5.489 18 C 0.224 3.776 19 O -0.481 6.481 20 C 0.175 3.825 21 N -0.844 5.844 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.266 0.734 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.022 0.978 29 H 0.132 0.868 30 H 0.180 0.820 31 H 0.407 0.593 32 H 0.409 0.591 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 1.672 15.062 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 H 0.023 0.977 4 C -0.536 4.536 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.750 3.250 9 H -0.190 1.190 10 H -0.214 1.214 11 H -0.176 1.176 12 N -0.220 5.220 13 C -0.099 4.099 14 C -0.044 4.044 15 C -0.195 4.195 16 C -0.095 4.095 17 N -0.207 5.207 18 C 0.039 3.961 19 O -0.288 6.288 20 C 0.063 3.937 21 N -0.384 5.384 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.150 0.850 30 H 0.197 0.803 31 H 0.265 0.735 32 H 0.239 0.761 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.467 1.763 15.301 15.599 hybrid contribution 0.994 0.463 -1.181 1.612 sum -1.473 2.226 14.119 14.370 Atomic orbital electron populations 1.21773 0.96829 1.00745 0.98707 1.19634 0.92797 0.91707 0.87260 0.97695 1.20946 1.42722 0.94338 0.95641 0.93745 1.25704 0.94437 1.02508 0.94950 1.70013 1.47798 1.37634 1.02543 0.86059 0.79927 0.81374 0.77621 1.18962 1.21356 1.17566 1.59474 1.11232 1.51618 0.99630 1.22180 0.85620 0.99819 1.02238 1.18850 1.00274 0.91995 0.93233 1.22643 1.01880 0.95698 0.99298 1.22334 0.96145 1.00684 0.90334 1.67064 1.12186 1.07999 1.33460 1.18505 0.98430 0.88694 0.90461 1.84823 1.33862 1.68802 1.41361 1.18789 0.93835 0.87380 0.93738 1.42314 1.59166 1.08712 1.28179 0.94737 0.93972 0.93218 0.92456 0.91137 0.91586 0.95975 0.85048 0.80265 0.73475 0.76075 0.76123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.14 71.98 0.66 -4.49 16 2 C 0.19 8.49 1.51 44.17 0.07 8.56 16 3 H 0.01 0.24 4.36 -2.38 -0.01 0.23 16 4 C -0.50 -26.50 7.39 25.60 0.19 -26.31 16 5 H 0.04 2.65 8.05 -2.91 -0.02 2.63 16 6 C 0.02 1.24 5.47 84.66 0.46 1.71 16 7 N -0.94 -56.02 13.96 21.45 0.30 -55.72 16 8 Si 0.93 42.18 26.99 68.60 1.85 44.04 16 9 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.25 -10.85 6.82 99.48 0.68 -10.17 16 12 N -0.50 -18.97 3.89 -699.07 -2.72 -21.69 16 13 C 0.05 1.75 9.13 127.69 1.17 2.92 16 14 C 0.06 2.15 3.27 38.54 0.13 2.28 16 15 C -0.17 -5.40 8.68 22.47 0.20 -5.21 16 16 C 0.06 1.80 11.16 84.56 0.94 2.75 16 17 N -0.49 -14.89 10.38 -308.64 -3.20 -18.09 16 18 C 0.22 6.53 7.76 84.83 0.66 7.19 16 19 O -0.48 -11.31 12.83 -91.38 -1.17 -12.48 16 20 C 0.17 5.29 6.83 38.31 0.26 5.55 16 21 N -0.84 -21.55 9.10 -50.37 -0.46 -22.01 16 22 H 0.03 1.35 7.06 -2.39 -0.02 1.33 16 23 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.07 2.75 6.82 -2.39 -0.02 2.74 16 28 H 0.02 0.77 7.42 -2.38 -0.02 0.75 16 29 H 0.13 4.04 7.18 -2.91 -0.02 4.02 16 30 H 0.18 3.84 8.06 -2.91 -0.02 3.81 16 31 H 0.41 5.43 9.06 -74.06 -0.67 4.76 16 32 H 0.41 11.38 8.22 -92.71 -0.76 10.62 16 33 H 0.41 8.15 8.22 -92.71 -0.76 7.39 16 Total: -1.00 -64.19 275.70 -1.74 -65.93 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -1.06 Total: 25.10 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 4.73 Total: -5.06 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -6.09 Total: -117.52 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.17 Total: -12.48 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.85 Total: 44.04 kcal Total: -64.19 -1.74 -65.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695490024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.206 kcal (2) G-P(sol) polarization free energy of solvation -64.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds