Wall clock time and date at job start Mon Mar 30 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48503 * 109.47069 * 269.99511 * 3 2 1 5 5 H 1.48496 * 109.47261 * 29.99943 * 3 2 1 6 6 H 1.48507 * 109.47114 * 150.00049 * 3 2 1 7 7 C 1.37887 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46779 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46837 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99921 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00211 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47303 * 179.97438 * 14 12 11 16 16 H 1.08998 * 115.56112 * 29.31008 * 15 14 12 17 17 C 1.53005 * 117.49838 * 243.62454 * 15 14 12 18 18 C 1.52999 * 59.99893 * 252.50529 * 17 15 14 19 19 H 1.09002 * 117.51736 * 107.47884 * 18 17 15 20 20 C 1.53003 * 117.50280 * 252.50834 * 18 17 15 21 21 C 1.53000 * 117.49792 * 128.62002 * 20 18 17 22 22 C 1.53002 * 60.02940 * 107.48056 * 21 20 18 23 23 H 0.96998 * 119.99328 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47235 * 59.99826 * 9 7 2 25 25 H 1.08998 * 109.46956 * 299.99643 * 9 7 2 26 26 H 1.08999 * 109.47396 * 59.99905 * 10 9 7 27 27 H 1.08998 * 109.47068 * 299.99554 * 10 9 7 28 28 H 0.96997 * 120.00320 * 359.97438 * 11 10 9 29 29 H 1.08999 * 109.46941 * 59.99901 * 14 12 11 30 30 H 1.08998 * 109.46902 * 299.99931 * 14 12 11 31 31 H 1.08994 * 117.49980 * 145.02335 * 17 15 14 32 32 H 1.08994 * 117.50020 * 359.97438 * 17 15 14 33 33 H 1.08999 * 115.55832 * 342.93619 * 20 18 17 34 34 H 1.09002 * 117.49833 * 214.98161 * 21 20 18 35 35 H 1.09002 * 117.49953 * 359.97438 * 21 20 18 36 36 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 37 37 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 7 1.5125 -4.9308 0.0024 12 6 2.1863 -6.0981 0.0031 13 8 3.3992 -6.0982 0.0027 14 6 1.4328 -7.4031 0.0031 15 6 2.4269 -8.5661 0.0033 16 1 3.3843 -8.3664 0.4846 17 6 2.4277 -9.4949 -1.2126 18 6 1.8584 -9.9816 0.1215 19 1 0.7761 -10.0843 0.1997 20 6 2.6771 -11.0085 0.9066 21 6 2.9682 -10.7044 2.3775 22 6 1.9585 -11.7927 2.0074 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8711 -3.6041 0.8922 27 1 2.8724 -3.6049 -0.8877 28 1 0.5426 -4.9308 0.0024 29 1 0.8065 -7.4611 -0.8871 30 1 0.8058 -7.4606 0.8929 31 1 3.3855 -9.9064 -1.5310 32 1 1.7198 -9.2778 -2.0123 33 1 3.4476 -11.5293 0.3383 34 1 3.9303 -11.0252 2.7769 35 1 2.5769 -9.7725 2.7859 36 1 2.2563 -12.8296 2.1633 37 1 0.9029 -11.5768 2.1719 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712904657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:47 Heat of formation + Delta-G solvation = -13.239024 kcal Electronic energy + Delta-G solvation = -15889.366509 eV Core-core repulsion = 13246.308553 eV Total energy + Delta-G solvation = -2643.057956 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.55402 -38.38110 -35.58570 -34.74962 -32.83593 -30.38916 -28.68017 -24.73306 -23.75664 -22.61268 -21.64668 -20.83444 -19.97572 -19.69813 -16.82964 -16.35554 -15.71705 -15.56601 -15.18480 -14.74521 -14.41615 -13.97060 -13.63720 -13.21798 -12.81510 -12.29998 -12.11487 -11.82850 -11.60482 -11.31122 -11.20269 -11.03311 -10.98843 -10.77223 -10.63908 -10.31875 -9.96216 -9.79193 -9.62689 -9.41028 -9.13514 -8.52848 -8.33747 -6.09669 -4.12399 3.05779 3.29356 3.35068 3.36696 3.40194 3.76290 3.84060 4.39518 4.44180 4.64416 4.71747 4.87547 4.91861 5.12989 5.16603 5.27387 5.31750 5.44705 5.48069 5.59777 5.67926 5.71084 5.76000 5.92376 5.99992 6.07307 6.34494 6.36446 6.37054 6.75183 6.95794 7.52051 7.61964 7.88842 8.05557 8.28288 8.70474 8.93796 9.52425 11.01984 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.059997 B = 0.003362 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.574908 B = 8326.897355 C = 8343.727786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.725 5.725 12 C 0.506 3.494 13 O -0.550 6.550 14 C -0.113 4.113 15 C -0.125 4.125 16 H 0.119 0.881 17 C -0.169 4.169 18 C -0.126 4.126 19 H 0.105 0.895 20 C -0.123 4.123 21 C -0.176 4.176 22 C -0.179 4.179 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.397 0.603 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -20.671 1.222 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.375 5.375 12 C 0.292 3.708 13 O -0.429 6.429 14 C -0.153 4.153 15 C -0.144 4.144 16 H 0.137 0.863 17 C -0.206 4.206 18 C -0.144 4.144 19 H 0.123 0.877 20 C -0.141 4.141 21 C -0.213 4.213 22 C -0.216 4.216 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.230 0.770 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.129 -20.521 1.227 20.588 hybrid contribution -0.141 0.981 -0.043 0.992 sum 0.988 -19.540 1.184 19.601 Atomic orbital electron populations 1.69959 1.06095 1.26867 1.50435 1.25005 0.94901 0.99425 0.94990 0.86508 0.79847 0.82976 0.78207 1.20550 1.21158 1.19716 1.21067 0.93257 0.90430 1.51288 0.92259 1.19321 0.94206 0.91166 0.97798 1.21702 0.96034 0.81672 1.00697 1.46348 1.10480 1.06640 1.74009 1.20494 0.88299 0.85531 0.76486 1.90656 1.14146 1.87771 1.50281 1.21246 0.98129 0.91880 1.04032 1.22162 1.00985 0.88708 1.02518 0.86256 1.23142 1.02573 1.03693 0.91223 1.21886 0.98425 0.94557 0.99506 0.87738 1.21747 1.01598 1.00327 0.90446 1.22972 1.00352 1.00375 0.97619 1.22985 0.98226 0.96809 1.03575 0.92848 0.95974 0.95966 0.92662 0.92659 0.76950 0.89057 0.88818 0.88802 0.88791 0.87832 0.88959 0.88482 0.89020 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.65 5.46 -17.81 -0.10 1.55 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.65 5.56 -60.29 -0.33 -12.98 16 12 C 0.51 8.51 7.83 -10.99 -0.09 8.43 16 13 O -0.55 -11.40 15.56 5.55 0.09 -11.32 16 14 C -0.11 -1.34 5.98 -27.89 -0.17 -1.50 16 15 C -0.13 -1.48 5.06 -90.62 -0.46 -1.94 16 16 H 0.12 1.70 7.31 -51.93 -0.38 1.32 16 17 C -0.17 -1.73 9.90 -26.73 -0.26 -1.99 16 18 C -0.13 -1.20 5.59 -90.62 -0.51 -1.71 16 19 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.12 -1.12 5.87 -90.58 -0.53 -1.65 16 21 C -0.18 -1.58 10.17 -26.73 -0.27 -1.85 16 22 C -0.18 -1.42 10.26 -26.69 -0.27 -1.69 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.40 5.92 8.47 -40.82 -0.35 5.57 16 29 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.87 8.03 -51.93 -0.42 0.46 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -31.33 316.62 -9.06 -40.39 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.17 Total: 2.68 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -3.14 Total: -14.50 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.40 Total: -38.47 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.33 -9.06 -40.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712904657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.150 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds