Wall clock time and date at job start Mon Mar 30 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48503 * 109.47069 * 269.99511 * 3 2 1 5 5 H 1.48496 * 109.47261 * 29.99943 * 3 2 1 6 6 H 1.48507 * 109.47114 * 150.00049 * 3 2 1 7 7 C 1.37887 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46779 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46837 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99921 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00211 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47303 * 179.97438 * 14 12 11 16 16 H 1.08998 * 115.56112 * 29.31008 * 15 14 12 17 17 C 1.53005 * 117.49838 * 243.62454 * 15 14 12 18 18 C 1.52999 * 59.99893 * 252.50529 * 17 15 14 19 19 H 1.09002 * 117.51736 * 107.47884 * 18 17 15 20 20 C 1.53003 * 117.50280 * 252.50834 * 18 17 15 21 21 C 1.53000 * 117.49792 * 128.62002 * 20 18 17 22 22 C 1.53002 * 60.02940 * 107.48056 * 21 20 18 23 23 H 0.96998 * 119.99328 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47235 * 59.99826 * 9 7 2 25 25 H 1.08998 * 109.46956 * 299.99643 * 9 7 2 26 26 H 1.08999 * 109.47396 * 59.99905 * 10 9 7 27 27 H 1.08998 * 109.47068 * 299.99554 * 10 9 7 28 28 H 0.96997 * 120.00320 * 359.97438 * 11 10 9 29 29 H 1.08999 * 109.46941 * 59.99901 * 14 12 11 30 30 H 1.08998 * 109.46902 * 299.99931 * 14 12 11 31 31 H 1.08994 * 117.49980 * 145.02335 * 17 15 14 32 32 H 1.08994 * 117.50020 * 359.97438 * 17 15 14 33 33 H 1.08999 * 115.55832 * 342.93619 * 20 18 17 34 34 H 1.09002 * 117.49833 * 214.98161 * 21 20 18 35 35 H 1.09002 * 117.49953 * 359.97438 * 21 20 18 36 36 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 37 37 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 7 1.5125 -4.9308 0.0024 12 6 2.1863 -6.0981 0.0031 13 8 3.3992 -6.0982 0.0027 14 6 1.4328 -7.4031 0.0031 15 6 2.4269 -8.5661 0.0033 16 1 3.3843 -8.3664 0.4846 17 6 2.4277 -9.4949 -1.2126 18 6 1.8584 -9.9816 0.1215 19 1 0.7761 -10.0843 0.1997 20 6 2.6771 -11.0085 0.9066 21 6 2.9682 -10.7044 2.3775 22 6 1.9585 -11.7927 2.0074 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8711 -3.6041 0.8922 27 1 2.8724 -3.6049 -0.8877 28 1 0.5426 -4.9308 0.0024 29 1 0.8065 -7.4611 -0.8871 30 1 0.8058 -7.4606 0.8929 31 1 3.3855 -9.9064 -1.5310 32 1 1.7198 -9.2778 -2.0123 33 1 3.4476 -11.5293 0.3383 34 1 3.9303 -11.0252 2.7769 35 1 2.5769 -9.7725 2.7859 36 1 2.2563 -12.8296 2.1633 37 1 0.9029 -11.5768 2.1719 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712904657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:47 Heat of formation + Delta-G solvation = -31.658859 kcal Electronic energy + Delta-G solvation = -15890.165253 eV Core-core repulsion = 13246.308553 eV Total energy + Delta-G solvation = -2643.856700 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81082 -39.32160 -36.68616 -36.17748 -34.81020 -32.00183 -30.06773 -26.63936 -24.54259 -23.32680 -23.09774 -22.28783 -21.07382 -20.62543 -18.59214 -17.93821 -16.87311 -16.64412 -16.53149 -16.37139 -15.78026 -15.16689 -14.83424 -14.53740 -14.26178 -13.96894 -13.23871 -13.20240 -12.90953 -12.56182 -12.49709 -12.32078 -12.23271 -12.13863 -11.74865 -11.67299 -11.49819 -11.46325 -10.84443 -10.71037 -10.61304 -10.30245 -9.98824 -8.25334 -6.35853 1.41076 1.41511 1.53094 1.71563 2.25864 2.44285 2.73343 3.09300 3.10522 3.65450 3.80129 3.87135 4.04728 4.17904 4.26238 4.36811 4.47395 4.48214 4.58549 4.61422 4.74653 4.82803 4.83252 4.85333 4.96499 5.06280 5.27217 5.28199 5.30969 5.33937 5.44925 5.52007 5.57477 5.78284 6.15659 6.68040 6.77463 7.33530 7.34238 8.86516 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.059997 B = 0.003362 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.574908 B = 8326.897355 C = 8343.727786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.720 5.720 12 C 0.504 3.496 13 O -0.593 6.593 14 C -0.099 4.099 15 C -0.147 4.147 16 H 0.088 0.912 17 C -0.169 4.169 18 C -0.105 4.105 19 H 0.122 0.878 20 C -0.136 4.136 21 C -0.189 4.189 22 C -0.164 4.164 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.412 0.588 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -21.631 1.099 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.371 5.371 12 C 0.292 3.708 13 O -0.474 6.474 14 C -0.138 4.138 15 C -0.166 4.166 16 H 0.107 0.893 17 C -0.206 4.206 18 C -0.123 4.123 19 H 0.140 0.860 20 C -0.154 4.154 21 C -0.226 4.226 22 C -0.201 4.201 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.247 0.753 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.424 -21.504 1.104 21.537 hybrid contribution 0.087 1.235 0.006 1.238 sum 0.511 -20.270 1.109 20.306 Atomic orbital electron populations 1.70056 1.07511 1.28036 1.50956 1.25876 0.95818 1.03090 0.94366 0.85446 0.78613 0.78441 0.78560 1.19712 1.20388 1.19146 1.21485 0.93550 0.92070 1.51640 0.92471 1.19126 0.94192 0.91716 0.96367 1.21185 0.95065 0.82681 0.99496 1.46187 1.11127 1.05606 1.74219 1.21412 0.88023 0.86625 0.74729 1.90641 1.16356 1.88417 1.52004 1.21251 0.97832 0.88310 1.06406 1.22022 1.00165 0.90051 1.04333 0.89341 1.23245 1.03006 1.02786 0.91546 1.21944 0.99240 0.92563 0.98583 0.86028 1.21833 1.02205 1.00809 0.90550 1.22992 1.01141 1.00700 0.97742 1.23072 0.98306 0.97050 1.01693 0.92489 0.97247 0.97267 0.93922 0.93864 0.75252 0.86353 0.86405 0.89042 0.87417 0.87667 0.88681 0.89458 0.87758 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.12 5.61 86.38 0.48 6.61 16 11 N -0.72 -24.84 5.56 -463.06 -2.57 -27.41 16 12 C 0.50 16.68 7.83 87.66 0.69 17.36 16 13 O -0.59 -25.01 15.56 -3.05 -0.05 -25.06 16 14 C -0.10 -2.13 5.98 29.85 0.18 -1.95 16 15 C -0.15 -3.31 5.06 -10.79 -0.05 -3.37 16 16 H 0.09 2.58 7.31 -2.39 -0.02 2.56 16 17 C -0.17 -3.14 9.90 30.60 0.30 -2.84 16 18 C -0.11 -1.78 5.59 -10.79 -0.06 -1.84 16 19 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 20 C -0.14 -2.24 5.87 -10.77 -0.06 -2.30 16 21 C -0.19 -3.20 10.17 30.60 0.31 -2.89 16 22 C -0.16 -2.23 10.26 30.62 0.31 -1.92 16 23 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.41 11.81 8.47 -92.71 -0.79 11.03 16 29 H 0.12 1.97 7.87 -2.39 -0.02 1.95 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.70 8.03 -2.39 -0.02 1.68 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -67.63 316.62 2.89 -64.74 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.25 Total: 17.71 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 2.95 Total: -21.71 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -2.29 Total: -81.53 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.63 2.89 -64.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712904657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.082 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds