Wall clock time and date at job start Mon Mar 30 2020 03:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 119.99988 * 2 1 4 4 H 1.48499 * 109.47210 * 270.00032 * 3 2 1 5 5 H 1.48501 * 109.47074 * 30.00324 * 3 2 1 6 6 H 1.48507 * 109.47029 * 149.99824 * 3 2 1 7 7 C 1.37880 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47173 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99553 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00088 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99745 * 179.97438 * 12 11 10 15 15 C 1.53781 * 113.61417 * 179.97438 * 14 12 11 16 16 C 1.53786 * 87.17350 * 139.93966 * 15 14 12 17 17 C 1.52999 * 113.61361 * 220.06273 * 16 15 14 18 18 C 1.52996 * 117.49842 * 248.61923 * 17 16 15 19 19 C 1.52995 * 60.00145 * 252.50664 * 18 17 16 20 20 C 1.53782 * 113.61283 * 277.49692 * 14 12 11 21 21 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47332 * 59.99383 * 9 7 2 23 23 H 1.08999 * 109.46703 * 299.99800 * 9 7 2 24 24 H 1.08994 * 109.47005 * 59.99969 * 10 9 7 25 25 H 1.09004 * 109.46932 * 299.99834 * 10 9 7 26 26 H 0.96993 * 120.00243 * 359.97438 * 11 10 9 27 27 H 1.08997 * 112.91128 * 48.74724 * 14 12 11 28 28 H 1.09002 * 113.61445 * 254.52965 * 15 14 12 29 29 H 1.09002 * 113.61408 * 25.34696 * 15 14 12 30 30 H 1.08993 * 113.61491 * 89.15923 * 16 15 14 31 31 H 1.09007 * 115.54830 * 34.32566 * 17 16 15 32 32 H 1.09004 * 117.50061 * 0.02562 * 18 17 16 33 33 H 1.09005 * 117.49776 * 145.01703 * 18 17 16 34 34 H 1.08995 * 117.50259 * 252.50485 * 19 18 17 35 35 H 1.09000 * 117.49749 * 107.48401 * 19 18 17 36 36 H 1.08997 * 113.61668 * 334.56418 * 20 14 12 37 37 H 1.08998 * 113.61674 * 105.38927 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1866 -6.0980 0.0003 13 8 3.3994 -6.0980 0.0007 14 6 1.4330 -7.4031 0.0003 15 6 2.3453 -8.6412 0.0002 16 6 1.3539 -9.2775 0.9887 17 6 2.0295 -10.0734 2.1072 18 6 1.8539 -11.5933 2.0981 19 6 1.1247 -10.7452 3.1421 20 6 0.9654 -7.8445 1.3972 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.5427 -4.9308 0.0000 27 1 0.6478 -7.4397 -0.7548 28 1 2.3898 -9.1506 -0.9624 29 1 3.3310 -8.4573 0.4277 30 1 0.5468 -9.8273 0.5046 31 1 2.9846 -9.6789 2.4542 32 1 1.2574 -12.0262 1.2950 33 1 2.6936 -12.1990 2.4391 34 1 1.4845 -10.7930 4.1698 35 1 0.0482 -10.6201 3.0261 36 1 1.5731 -7.4431 2.2082 37 1 -0.1035 -7.7097 1.5626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714423718.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:38 Heat of formation + Delta-G solvation = -35.882932 kcal Electronic energy + Delta-G solvation = -16150.611979 eV Core-core repulsion = 13506.572110 eV Total energy + Delta-G solvation = -2644.039869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.35606 -39.33287 -36.84683 -36.40752 -34.81040 -31.67712 -28.25050 -26.61772 -26.34482 -23.43742 -23.07917 -22.51708 -20.95669 -20.34753 -18.61425 -18.03160 -16.84932 -16.62401 -16.51440 -16.27218 -15.80622 -15.20791 -14.74218 -14.47077 -14.31409 -13.41285 -13.35024 -13.23500 -12.95181 -12.86569 -12.54651 -12.32497 -12.27564 -12.19518 -11.71724 -11.61854 -11.53069 -11.45104 -11.01815 -10.62436 -10.61727 -10.51173 -10.00887 -8.25499 -6.36210 1.40810 1.41333 1.52903 1.66268 2.29273 2.47178 2.89209 3.09020 3.55462 3.66918 3.71400 3.90754 4.07429 4.16751 4.23982 4.38069 4.46583 4.50512 4.56986 4.80789 4.83512 4.84243 4.85444 4.91820 5.06985 5.10304 5.18764 5.29357 5.32778 5.35324 5.48942 5.56430 5.61759 5.77658 6.15044 6.66838 6.76895 7.31871 7.33174 8.86338 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.058944 B = 0.003632 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.914330 B = 7708.423669 C = 7849.638060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.139 3.861 11 N -0.717 5.717 12 C 0.511 3.489 13 O -0.595 6.595 14 C -0.136 4.136 15 C -0.112 4.112 16 C -0.063 4.063 17 C -0.157 4.157 18 C -0.174 4.174 19 C -0.177 4.177 20 C -0.111 4.111 21 H 0.266 0.734 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.411 0.589 27 H 0.140 0.860 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 -20.984 2.737 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.015 3.985 11 N -0.367 5.367 12 C 0.299 3.701 13 O -0.477 6.477 14 C -0.157 4.157 15 C -0.149 4.149 16 C -0.081 4.081 17 C -0.176 4.176 18 C -0.211 4.211 19 C -0.214 4.214 20 C -0.149 4.149 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.247 0.753 27 H 0.158 0.842 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.955 -20.850 2.740 21.051 hybrid contribution 0.115 1.308 0.003 1.313 sum -0.840 -19.542 2.743 19.751 Atomic orbital electron populations 1.70053 1.07513 1.28051 1.50907 1.25874 0.95823 1.03096 0.94346 0.85440 0.78607 0.78415 0.78565 1.19703 1.20366 1.19147 1.21477 0.93538 0.92048 1.51703 0.92478 1.19120 0.94166 0.91704 0.96349 1.21202 0.95102 0.82735 0.99469 1.46202 1.11092 1.05597 1.73817 1.21327 0.87821 0.86428 0.74499 1.90628 1.16284 1.88429 1.52311 1.22897 1.00560 0.90010 1.02197 1.22839 0.97709 0.93732 1.00665 1.22055 0.97787 0.93784 0.94506 1.22223 1.00395 0.94981 0.99969 1.23040 1.03331 0.92541 1.02191 1.22981 0.98972 1.04098 0.95334 1.22895 1.02476 0.95914 0.93641 0.92477 0.97272 0.97287 0.93969 0.93834 0.75339 0.84239 0.89892 0.91265 0.86787 0.89300 0.87759 0.88659 0.88805 0.87931 0.91463 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.23 5.09 29.85 0.15 1.38 16 10 C 0.14 6.17 5.61 86.38 0.48 6.65 16 11 N -0.72 -25.42 5.56 -463.06 -2.57 -27.99 16 12 C 0.51 17.44 7.35 87.66 0.64 18.09 16 13 O -0.60 -25.55 15.90 -3.02 -0.05 -25.59 16 14 C -0.14 -3.09 4.15 -11.01 -0.05 -3.13 16 15 C -0.11 -2.41 6.96 31.12 0.22 -2.19 16 16 C -0.06 -1.05 3.82 -10.19 -0.04 -1.08 16 17 C -0.16 -2.66 5.42 -10.80 -0.06 -2.72 16 18 C -0.17 -2.35 10.24 30.59 0.31 -2.03 16 19 C -0.18 -2.48 10.25 30.59 0.31 -2.17 16 20 C -0.11 -2.16 7.20 31.20 0.22 -1.94 16 21 H 0.27 14.70 8.31 -92.71 -0.77 13.92 16 22 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 25 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.41 12.33 8.47 -92.71 -0.79 11.54 16 27 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.89 7.38 -2.39 -0.02 1.87 16 30 H 0.11 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.59 8.05 -2.39 -0.02 1.57 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -67.55 312.06 2.85 -64.71 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.25 Total: 16.34 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 2.90 Total: -19.19 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.29 Total: -82.21 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.55 2.85 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714423718.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.824 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds