Wall clock time and date at job start Mon Mar 30 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47429 * 2 1 4 4 C 1.50694 * 109.47176 * 239.99829 * 2 1 3 5 5 N 1.31405 * 125.15716 * 299.69692 * 4 2 1 6 6 N 1.40462 * 107.17870 * 179.91269 * 5 4 2 7 7 H 0.96994 * 127.01485 * 180.11391 * 6 5 4 8 8 C 1.37028 * 105.96631 * 0.34032 * 6 5 4 9 9 C 1.40371 * 126.31477 * 179.76586 * 8 6 5 10 10 H 1.07994 * 120.00222 * 180.02562 * 9 8 6 11 11 C 1.40269 * 120.00016 * 0.03485 * 9 8 6 12 12 N 1.30652 * 119.99819 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00323 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46860 * 60.00032 * 13 11 9 15 15 H 1.48501 * 109.47384 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47147 * 300.00249 * 13 11 9 17 17 N 1.32236 * 125.15949 * 120.00278 * 4 2 1 18 18 C 1.53001 * 109.47126 * 120.00068 * 2 1 3 19 19 H 1.09000 * 110.27870 * 59.36094 * 18 2 1 20 20 C 1.54951 * 110.30685 * 297.16628 * 18 2 1 21 21 C 1.55312 * 100.94225 * 204.63870 * 20 18 2 22 22 C 1.54380 * 102.25056 * 34.13333 * 21 20 18 23 23 O 1.43245 * 107.59000 * 338.64209 * 22 21 20 24 24 H 1.08998 * 109.47429 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47104 * 299.99969 * 1 2 3 26 26 H 1.08996 * 109.47108 * 59.99882 * 1 2 3 27 27 H 0.97000 * 119.99852 * 180.02562 * 12 11 9 28 28 H 1.09000 * 111.12523 * 322.55899 * 20 18 2 29 29 H 1.09000 * 111.12500 * 86.68017 * 20 18 2 30 30 H 1.08999 * 110.84840 * 275.94257 * 21 20 18 31 31 H 1.08999 * 110.84966 * 152.32055 * 21 20 18 32 32 H 1.08996 * 109.83192 * 219.13077 * 22 21 20 33 33 H 1.09002 * 109.83458 * 98.15431 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7827 -1.9640 -1.5352 6 7 2.4289 -2.2313 -2.7534 7 1 2.4322 -3.0698 -3.2409 8 6 3.0580 -1.0673 -3.1097 9 6 3.8360 -0.8613 -4.2598 10 1 4.2875 0.1029 -4.4407 11 6 4.0270 -1.9077 -5.1741 12 7 3.4810 -3.0743 -4.9551 13 14 5.0618 -1.6334 -6.7049 14 1 6.4399 -1.2477 -6.3081 15 1 5.1088 -2.8857 -7.5016 16 1 4.4599 -0.5488 -7.5214 17 7 2.7958 -0.1685 -2.1642 18 6 2.0400 -0.7213 1.2492 19 1 1.6746 -1.7480 1.2683 20 6 1.5937 0.0343 2.5263 21 6 2.6824 -0.4231 3.5351 22 6 3.9299 -0.5515 2.6349 23 8 3.4758 -0.7023 1.2847 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 3.6134 -3.7981 -5.5872 28 1 1.6260 1.1134 2.3758 29 1 0.6019 -0.2858 2.8457 30 1 2.4222 -1.3849 3.9770 31 1 2.8371 0.3306 4.3072 32 1 4.5102 -1.4258 2.9296 33 1 4.5421 0.3463 2.7210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720258938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:28 Heat of formation + Delta-G solvation = 5.195384 kcal Electronic energy + Delta-G solvation = -16864.078325 eV Core-core repulsion = 14118.279401 eV Total energy + Delta-G solvation = -2745.798923 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85849 -38.97342 -34.46531 -33.43213 -31.77630 -30.02710 -29.17219 -27.65416 -25.86315 -23.80611 -21.74182 -21.14893 -20.04842 -18.31322 -17.57198 -16.38938 -15.67064 -15.31510 -14.99619 -14.55222 -13.81169 -13.32529 -13.23229 -12.99674 -12.68762 -11.98474 -11.91653 -11.50682 -11.48132 -11.34972 -11.26310 -11.06761 -10.80239 -10.61326 -10.49602 -10.22641 -9.74377 -9.55550 -9.07888 -8.08283 -8.05819 -7.83292 -7.06425 -4.78560 2.91343 3.01315 3.05998 3.57739 3.82142 4.11772 4.29471 4.65528 4.80370 4.93377 5.04626 5.32421 5.39311 5.46921 5.57559 5.70864 5.79548 5.87233 5.88979 5.94720 6.02778 6.14357 6.25524 6.32646 6.50358 6.66242 7.03236 7.09855 7.48134 7.71524 8.16391 8.33171 8.58721 8.65617 9.50714 10.00231 10.26917 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043099 B = 0.005909 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.511109 B = 4737.508674 C = 4995.312088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.012 3.988 3 H 0.087 0.913 4 C 0.227 3.773 5 N -0.407 5.407 6 N -0.507 5.507 7 H 0.438 0.562 8 C 0.411 3.589 9 C -0.428 4.428 10 H 0.101 0.899 11 C 0.072 3.928 12 N -0.838 5.838 13 Si 0.944 3.056 14 H -0.262 1.262 15 H -0.278 1.278 16 H -0.262 1.262 17 N -0.626 5.626 18 C 0.096 3.904 19 H 0.073 0.927 20 C -0.151 4.151 21 C -0.155 4.155 22 C 0.049 3.951 23 O -0.364 6.364 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.292 0.708 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 2.803 9.611 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.009 4.009 3 H 0.106 0.894 4 C -0.057 4.057 5 N -0.243 5.243 6 N -0.233 5.233 7 H 0.292 0.708 8 C 0.156 3.844 9 C -0.469 4.469 10 H 0.119 0.881 11 C -0.144 4.144 12 N -0.471 5.471 13 Si 0.768 3.232 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.186 1.186 17 N -0.364 5.364 18 C 0.037 3.963 19 H 0.091 0.909 20 C -0.188 4.188 21 C -0.193 4.193 22 C -0.028 4.028 23 O -0.283 6.283 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.423 2.434 9.812 10.396 hybrid contribution 0.506 -0.625 -0.963 1.254 sum -1.917 1.810 8.850 9.234 Atomic orbital electron populations 1.21714 0.93755 1.02473 1.01384 1.19370 0.94777 0.98438 0.88327 0.89439 1.22991 0.96597 0.90196 0.95872 1.77499 1.27162 1.17042 1.02564 1.48639 1.42621 1.14464 1.17562 0.70815 1.20763 0.89768 0.81268 0.92583 1.18619 1.27448 0.99516 1.01324 0.88100 1.26035 0.94595 0.93622 1.00165 1.68758 1.38315 1.03101 1.36952 0.85762 0.80078 0.78523 0.78844 1.18634 1.20278 1.18640 1.70683 1.26586 1.32883 1.06218 1.22995 0.81028 0.98745 0.93515 0.90875 1.23349 0.99156 1.01390 0.94946 1.23110 0.95622 1.02019 0.98555 1.23071 0.96183 1.00760 0.82836 1.88619 1.20436 1.94565 1.24730 0.91991 0.92599 0.92204 0.89669 0.90197 0.89990 0.90830 0.90400 0.92098 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.98 37.16 0.33 -1.87 16 2 C 0.01 0.24 2.63 -91.78 -0.24 0.00 16 3 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 4 C 0.23 5.90 6.31 -157.15 -0.99 4.91 16 5 N -0.41 -11.07 12.80 32.36 0.41 -10.66 16 6 N -0.51 -14.44 7.16 31.11 0.22 -14.22 16 7 H 0.44 12.11 6.38 -182.33 -1.16 10.95 16 8 C 0.41 12.07 7.67 -155.87 -1.20 10.88 16 9 C -0.43 -11.78 9.47 -38.02 -0.36 -12.14 16 10 H 0.10 2.67 7.85 -52.49 -0.41 2.26 16 11 C 0.07 1.80 5.50 -17.29 -0.10 1.70 16 12 N -0.84 -21.02 10.72 55.56 0.60 -20.42 16 13 Si 0.94 18.55 29.56 -169.99 -5.03 13.52 16 14 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 15 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 17 N -0.63 -18.10 11.24 -10.11 -0.11 -18.21 16 18 C 0.10 1.70 2.95 -25.70 -0.08 1.62 16 19 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 20 C -0.15 -1.90 5.55 -24.48 -0.14 -2.03 16 21 C -0.16 -1.76 7.02 -24.78 -0.17 -1.94 16 22 C 0.05 0.71 7.79 37.88 0.30 1.00 16 23 O -0.36 -7.36 10.73 -35.23 -0.38 -7.74 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.70 7.28 -51.93 -0.38 0.32 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.29 6.59 8.29 -40.82 -0.34 6.25 16 28 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 29 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -31.90 278.46 -8.03 -39.94 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.31 Total: 11.46 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.64 Total: 2.13 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: 1.12 Total: -63.51 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.38 Total: -7.74 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.90 -8.03 -39.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720258938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.133 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds