Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00513 * 2 1 4 4 H 1.48503 * 109.46988 * 240.00072 * 3 2 1 5 5 H 1.48492 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47083 * 119.99781 * 3 2 1 7 7 C 1.37884 * 119.99380 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99301 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00179 * 359.72111 * 7 2 1 10 10 N 1.46498 * 109.47061 * 180.27570 * 9 7 2 11 11 C 1.34777 * 120.00338 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99433 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00544 * 180.02562 * 11 10 9 14 14 H 1.09000 * 115.55123 * 14.84727 * 13 11 10 15 15 C 1.52994 * 117.49995 * 160.51996 * 13 11 10 16 16 C 1.52998 * 60.00313 * 107.48911 * 15 13 11 17 17 H 1.09003 * 117.49856 * 107.48851 * 16 15 13 18 18 C 1.52993 * 117.49988 * 252.51087 * 16 15 13 19 19 C 1.54265 * 110.03539 * 251.64751 * 18 16 15 20 20 C 1.54882 * 104.19968 * 217.10564 * 19 18 16 21 21 C 1.54889 * 102.74899 * 37.93869 * 20 19 18 22 22 C 1.53870 * 110.03464 * 134.47846 * 18 16 15 23 23 H 0.97006 * 119.99059 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47283 * 300.27696 * 9 7 2 25 25 H 1.08999 * 109.46550 * 60.28098 * 9 7 2 26 26 H 0.97007 * 120.00128 * 0.02562 * 10 9 7 27 27 H 1.09005 * 117.49954 * 214.97745 * 15 13 11 28 28 H 1.08995 * 117.50160 * 359.97345 * 15 13 11 29 29 H 1.09005 * 110.01844 * 13.08965 * 18 16 15 30 30 H 1.08999 * 110.48515 * 335.78772 * 19 18 16 31 31 H 1.09003 * 110.48688 * 98.42397 * 19 18 16 32 32 H 1.09002 * 110.75431 * 279.62888 * 20 19 18 33 33 H 1.09001 * 110.91688 * 156.33277 * 20 19 18 34 34 H 1.09006 * 110.48959 * 203.38168 * 21 20 19 35 35 H 1.08998 * 110.48548 * 80.73777 * 21 20 19 36 36 H 1.09001 * 110.03580 * 238.56638 * 22 18 16 37 37 H 1.08999 * 110.03175 * 0.02562 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 0.0052 10 7 2.2028 -3.6127 0.0101 11 6 1.7535 -4.8834 0.0152 12 8 0.5611 -5.1049 0.0153 13 6 2.7327 -6.0289 0.0207 14 1 3.7605 -5.7675 0.2723 15 6 2.2189 -7.3952 0.4787 16 6 2.5176 -7.1471 -1.0012 17 1 3.4040 -7.6216 -1.4221 18 6 1.3248 -7.0168 -1.9504 19 6 1.2267 -8.2659 -2.8504 20 6 0.7689 -7.7109 -4.2220 21 6 1.5442 -6.3740 -4.3258 22 6 1.5266 -5.8139 -2.8885 23 1 -0.4849 0.8402 0.0004 24 1 0.6242 -2.5530 0.8955 25 1 0.6243 -2.5607 -0.8845 26 1 3.1565 -3.4355 0.0096 27 1 2.9088 -8.0330 1.0314 28 1 1.1727 -7.4656 0.7765 29 1 0.4047 -6.8943 -1.3789 30 1 2.1997 -8.7490 -2.9398 31 1 0.4882 -8.9636 -2.4554 32 1 -0.3068 -7.5349 -4.2279 33 1 1.0529 -8.3859 -5.0293 34 1 1.0374 -5.6910 -5.0076 35 1 2.5685 -6.5515 -4.6535 36 1 0.7041 -5.1081 -2.7729 37 1 2.4746 -5.3232 -2.6677 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846035196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = -62.091615 kcal Electronic energy + Delta-G solvation = -17005.479677 eV Core-core repulsion = 14360.303314 eV Total energy + Delta-G solvation = -2645.176363 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19954 -39.02800 -36.73395 -35.95760 -34.33192 -29.93734 -29.51431 -29.30027 -25.86270 -23.60550 -22.90480 -21.48305 -21.23886 -20.47351 -18.67153 -17.62701 -17.11914 -16.78807 -16.25121 -15.97843 -15.68322 -15.24050 -14.67038 -14.24362 -14.07902 -13.94713 -13.61500 -12.97710 -12.91967 -12.72934 -12.63882 -12.26072 -12.02354 -11.94096 -11.90538 -11.54484 -11.50107 -11.43698 -11.06911 -10.85119 -10.80662 -10.58485 -9.79484 -8.31124 -6.48248 1.40928 1.45465 1.53750 1.64428 2.31125 2.59496 2.96998 3.04131 3.59443 3.73573 3.79505 4.01469 4.04036 4.09667 4.31429 4.54170 4.58302 4.65656 4.72041 4.82767 4.88298 4.90113 4.96547 5.07241 5.09079 5.15908 5.21559 5.23241 5.34108 5.41956 5.47562 5.48866 5.61095 5.71315 5.83791 6.62923 6.95132 7.21602 7.53812 8.81081 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031259 B = 0.005622 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.528475 B = 4979.065403 C = 5429.501221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.271 3.729 10 N -0.708 5.708 11 C 0.525 3.475 12 O -0.599 6.599 13 C -0.203 4.203 14 H 0.147 0.853 15 C -0.137 4.137 16 C -0.097 4.097 17 H 0.148 0.852 18 C -0.071 4.071 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.117 4.117 23 H 0.269 0.731 24 H -0.017 1.017 25 H -0.017 1.017 26 H 0.406 0.594 27 H 0.137 0.863 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.016 0.984 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 -15.886 -5.394 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.148 3.852 10 N -0.357 5.357 11 C 0.313 3.687 12 O -0.481 6.481 13 C -0.224 4.224 14 H 0.165 0.835 15 C -0.174 4.174 16 C -0.115 4.115 17 H 0.165 0.835 18 C -0.090 4.090 19 C -0.144 4.144 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.154 4.154 23 H 0.078 0.922 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.241 0.759 27 H 0.155 0.845 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.035 0.965 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.550 -15.889 -5.385 18.830 hybrid contribution -0.110 1.577 0.307 1.610 sum 8.441 -14.312 -5.078 17.375 Atomic orbital electron populations 1.70145 1.08352 1.28641 1.49915 1.26095 0.95776 1.03979 0.93742 0.85192 0.77921 0.76473 0.79547 1.18621 1.20968 1.18561 1.21592 0.94252 0.90629 1.53056 0.89914 1.18456 0.88623 0.84447 0.93631 1.46145 1.10951 1.05566 1.73028 1.20419 0.88944 0.84270 0.75035 1.90600 1.19194 1.85413 1.52907 1.22405 1.00121 0.88967 1.10939 0.83502 1.23152 1.02407 0.94533 0.97328 1.22614 1.00558 0.97922 0.90428 0.83474 1.21412 0.96676 0.95407 0.95491 1.22374 1.02541 0.95541 0.93898 1.22507 0.99261 0.96370 0.97922 1.22360 1.01401 0.97115 0.94856 1.22092 0.99817 0.97203 0.96330 0.92234 0.99912 0.99902 0.75890 0.84466 0.90339 0.93278 0.89058 0.91433 0.92922 0.89237 0.92642 0.89783 0.96466 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.99 43.04 29.54 68.60 2.03 45.06 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.56 -31.23 9.28 25.60 0.24 -30.99 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 15.50 5.43 85.63 0.46 15.97 16 10 N -0.71 -31.57 5.55 -466.80 -2.59 -34.16 16 11 C 0.52 21.99 6.02 87.66 0.53 22.51 16 12 O -0.60 -30.50 14.38 -3.05 -0.04 -30.54 16 13 C -0.20 -5.74 5.99 -11.54 -0.07 -5.81 16 14 H 0.15 3.17 8.14 -2.39 -0.02 3.15 16 15 C -0.14 -3.27 9.70 30.59 0.30 -2.97 16 16 C -0.10 -2.27 4.84 -10.80 -0.05 -2.32 16 17 H 0.15 2.36 7.90 -2.39 -0.02 2.34 16 18 C -0.07 -2.03 2.27 -10.07 -0.02 -2.05 16 19 C -0.11 -2.18 6.36 31.67 0.20 -1.97 16 20 C -0.12 -2.55 6.91 31.88 0.22 -2.33 16 21 C -0.12 -2.90 6.83 31.67 0.22 -2.68 16 22 C -0.12 -3.73 5.21 31.32 0.16 -3.57 16 23 H 0.27 15.49 8.31 -92.70 -0.77 14.71 16 24 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 25 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 26 H 0.41 15.14 8.32 -92.70 -0.77 14.37 16 27 H 0.14 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.08 2.33 7.76 -2.39 -0.02 2.31 16 29 H 0.05 1.81 6.57 -2.38 -0.02 1.79 16 30 H 0.09 1.41 7.70 -2.39 -0.02 1.39 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 1.82 7.39 -2.39 -0.02 1.81 16 Total: -1.00 -73.21 301.32 2.60 -70.61 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.27 Total: 21.82 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 2.65 Total: -15.55 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -2.30 Total: -91.40 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.04 Total: -30.54 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.21 2.60 -70.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846035196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.520 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds